Cmc01g0012441 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0012441
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr01: 8644568 .. 8644947 (-)
RNA-Seq ExpressionCmc01g0012441
SyntenyCmc01g0012441
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGATGATGTGATGTGATATGATGATAGGATGTGACATGATGACGTGATGATGCTATGTTACGTGTATGCTATGGTTAGGGTGCATGTTAGCTTATCCTATTAGAGTCGTACCTGCATGGGTTCCTTCGGGATCACCACCTATTTAGGACTGTGTAGTTCGACGGGACCGTCAGTTTGACATTGATATAGACACAATTCGAGTGATTCGATGGGATCCTCGCAGCCCGATTGTCTTAGTGTTTCCTCCGGGTACGCAACAAACCAGTTTGTCCTAGGTGTTCCATTGGGTCATCGAAGACCAGATTTTGTTCCTACAGGATCACATGTTGCACGTGTTCGGGAACATGCCAGTTCTTGGGTACCATTTTCAGGACTCTAA

mRNA sequence

GTGATGATGTGATGTGATATGATGATAGGATGTGACATGATGACGTGATGATGCTATGTTACGTGTATGCTATGGTTAGGGTGCATGTTAGCTTATCCTATTAGAGTCGTACCTGCATGGGTTCCTTCGGGATCACCACCTATTTAGGACTGTGTAGTTCGACGGGACCGTCAGTTTGACATTGATATAGACACAATTCGAGTGATTCGATGGGATCCTCGCAGCCCGATTGTCTTAGTGTTTCCTCCGGGTACGCAACAAACCAGTTTGTCCTAGGTGTTCCATTGGGTCATCGAAGACCAGATTTTGTTCCTACAGGATCACATGTTGCACGTGTTCGGGAACATGCCAGTTCTTGGGTACCATTTTCAGGACTCTAA

Coding sequence (CDS)

ATGGGATCCTCGCAGCCCGATTGTCTTAGTGTTTCCTCCGGGTACGCAACAAACCAGTTTGTCCTAGGTGTTCCATTGGGTCATCGAAGACCAGATTTTGTTCCTACAGGATCACATGTTGCACGTGTTCGGGAACATGCCAGTTCTTGGGTACCATTTTCAGGACTCTAA

Protein sequence

MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSWVPFSGL
Homology
[Close]
BLAST of Cmc01g0012441 vs. NCBI nr
Match: KAA0046173.1 (hypothetical protein E6C27_scaffold376G00280 [Cucumis melo var. makuwa] >TYK00202.1 hypothetical protein E5676_scaffold1333G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSW 51
          MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDF PTGSHVARVREHASSW
Sbjct: 1  MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFFPTGSHVARVREHASSW 50

[Close]
BLAST of Cmc01g0012441 vs. NCBI nr
Match: KAA0041337.1 (hypothetical protein E6C27_scaffold128G003460 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSW 51
          MGSSQPDCLSVSSGYAT+QFVLGVPLGH+RPDFVPTGSHVARVRE ASSW
Sbjct: 1  MGSSQPDCLSVSSGYATDQFVLGVPLGHQRPDFVPTGSHVARVRECASSW 50

[Close]
BLAST of Cmc01g0012441 vs. NCBI nr
Match: KAA0050017.1 (hypothetical protein E6C27_scaffold13G002040 [Cucumis melo var. makuwa] >TYK27248.1 hypothetical protein E5676_scaffold244G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 1  MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSW 51
          MGSSQPDCLSVSSGYAT+QFVLGVPLGHRRPDFVPTG+HVARVRE AS W
Sbjct: 1  MGSSQPDCLSVSSGYATDQFVLGVPLGHRRPDFVPTGAHVARVRERASYW 50

[Close]
BLAST of Cmc01g0012441 vs. NCBI nr
Match: KAA0066985.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ96794.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 2   GSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSW 51
           GSSQPDCLSVSSGYAT+QFVLGVPLGHRRPDFVPTGSHVARVRE  SSW
Sbjct: 163 GSSQPDCLSVSSGYATDQFVLGVPLGHRRPDFVPTGSHVARVRERVSSW 211

[Close]
BLAST of Cmc01g0012441 vs. NCBI nr
Match: KAA0042335.1 (hypothetical protein E6C27_scaffold795G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 4.8e-18
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 2   GSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSWV 52
           GS+QPDCLS SSGYAT+QFVLGVPLGHRRPDFVPTGSHVARVRE ASSWV
Sbjct: 160 GSTQPDCLSFSSGYATDQFVLGVPLGHRRPDFVPTGSHVARVRECASSWV 209

[Close]
BLAST of Cmc01g0012441 vs. ExPASy TrEMBL
Match: A0A5A7TRI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1333G00180 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSW 51
          MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDF PTGSHVARVREHASSW
Sbjct: 1  MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFFPTGSHVARVREHASSW 50

[Close]
BLAST of Cmc01g0012441 vs. ExPASy TrEMBL
Match: A0A5A7TI67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003460 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.1e-19
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSW 51
          MGSSQPDCLSVSSGYAT+QFVLGVPLGH+RPDFVPTGSHVARVRE ASSW
Sbjct: 1  MGSSQPDCLSVSSGYATDQFVLGVPLGHQRPDFVPTGSHVARVRECASSW 50

[Close]
BLAST of Cmc01g0012441 vs. ExPASy TrEMBL
Match: A0A5D3DUS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00110 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 1  MGSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSW 51
          MGSSQPDCLSVSSGYAT+QFVLGVPLGHRRPDFVPTG+HVARVRE AS W
Sbjct: 1  MGSSQPDCLSVSSGYATDQFVLGVPLGHRRPDFVPTGAHVARVRERASYW 50

[Close]
BLAST of Cmc01g0012441 vs. ExPASy TrEMBL
Match: A0A5A7VMH4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00090 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 2   GSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSW 51
           GSSQPDCLSVSSGYAT+QFVLGVPLGHRRPDFVPTGSHVARVRE  SSW
Sbjct: 163 GSSQPDCLSVSSGYATDQFVLGVPLGHRRPDFVPTGSHVARVRERVSSW 211

[Close]
BLAST of Cmc01g0012441 vs. ExPASy TrEMBL
Match: A0A5A7TLL5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold795G00320 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 2   GSSQPDCLSVSSGYATNQFVLGVPLGHRRPDFVPTGSHVARVREHASSWV 52
           GS+QPDCLS SSGYAT+QFVLGVPLGHRRPDFVPTGSHVARVRE ASSWV
Sbjct: 160 GSTQPDCLSFSSGYATDQFVLGVPLGHRRPDFVPTGSHVARVRECASSWV 209

The following BLAST results are available for this feature:
BLAST of Cmc01g0012441 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046173.12.3e-2098.00hypothetical protein E6C27_scaffold376G00280 [Cucumis melo var. makuwa] >TYK0020... [more]
KAA0041337.11.3e-1894.00hypothetical protein E6C27_scaffold128G003460 [Cucumis melo var. makuwa][more]
KAA0050017.12.1e-1892.00hypothetical protein E6C27_scaffold13G002040 [Cucumis melo var. makuwa] >TYK2724... [more]
KAA0066985.12.1e-1893.88gag/pol protein [Cucumis melo var. makuwa] >TYJ96794.1 gag/pol protein [Cucumis ... [more]
KAA0042335.14.8e-1892.00hypothetical protein E6C27_scaffold795G00320 [Cucumis melo var. makuwa][more]
BLAST of Cmc01g0012441 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc01g0012441 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TRI01.1e-2098.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TI676.1e-1994.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DUS51.0e-1892.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VMH41.0e-1893.88Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G0009... [more]
A0A5A7TLL52.3e-1892.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Cmc01g0012441 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0012441.1Cmc01g0012441.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding