Cmc01g0007631 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0007631
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCMiso1.1chr01: 2880461 .. 2881380 (+)
RNA-Seq ExpressionCmc01g0007631
SyntenyCmc01g0007631
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCAAAACAATACCTATCTCAGCTCCAAGCTTGCTGCATTTTATGGTGCTTGAGGTCGCATGACACAAGCCTAAGTGATATTCAATGGGGTTGCTTTGAAAAATTCTTTCCTGTGGAATTTTATGATTAGAGGTTATGCTTCTGATGGTACTAATGCTTATAAGGCCCTTGCTATGTATCGTAAAATTCTAGCATTTGGATTCAATGCTGACAATTATATATTCCCTTTTGTTTTAAAGGCGTGTGGTGATCTGGGTCTTTGTGAAATGGAAATGGAAATTCATTGTCAGGTGGAGGTTTGTGTGTGGGACTCAGATAATGTGAACAATTCTCTTGTAGCAAAAAAGATGTTTGATAAAATGCCTGTGAGCGATTTAACTTCTTGGAATACTATGATTTCAGGTTACGTGAGGAATAACAACGCCATGGAAGCTTTAACGATTATGTATCTAACGGGGAAGTCTGAGTTGAAAGCAGATGGGACTACTTTGCTTGCCCTCCTCACTAGCTTGGCTGCAATTAAGCAGGGGAAGGAAATCCATTGTTATGCTGTACGCAATAATTATTGTACTTTGAATGACTTCTTGATGAACTCGCTGATTGATATGTACTCAAATTGCAGTTCTGTTGCTGCCGCTAGGCAATTATTCGAGGAGTTGAAAACTAAAGATACTGTATCGTGGAATTCTATAATTTCCTGCTATCAACATAGTGGAGATGCTTTTGAAAGTTTAAGACTTTTCTATCAAACGCTAATTGAAGACACAGCAGCTTCAGATGAGATAACTATCGTTTCCGTCCTTGGTGCTTGTGAAAAGATTACAGCCTTGCAATTTGGGAAGTCAGTCCATTCATATTTAACTAAAATAGGGCTTTTCTTAAATTCCTTTTTAGGGACTGCCTTTATAGACATGTAGG

mRNA sequence

TCTTCAAAACAATACCTATCTCAGCTCCAAGCTTGCTGCATTTTATGGTGCTTGAGGTCGCATGACACAAGCCTAAGTGATATTCAATGGGGTTGCTTTGAAAAATTCTTTCCTGTGGAATTTTATGATTAGAGGTTATGCTTCTGATGGCGTGTGGTGATCTGGGTCTTTGTGAAATGGAAATGGAAATTCATTGTCAGGTGGAGGTTTGTGTGTGGGACTCAGATAATGTGAACAATTCTCTTGTAGCAAAAAAGATGTTTGATAAAATGCCTGTGAGCGATTTAACTTCTTGGAATACTATGATTTCAGGTTACGTGAGGAATAACAACGCCATGGAAGCTTTAACGATTATGTATCTAACGGGGAAGTCTGAGTTGAAAGCAGATGGGACTACTTTGCTTGCCCTCCTCACTAGCTTGGCTGCAATTAAGCAGGGGAAGGAAATCCATTGTTATGCTGTACGCAATAATTATTGTACTTTGAATGACTTCTTGATGAACTCGCTGATTGATATGTACTCAAATTGCAGTTCTGTTGCTGCCGCTAGGCAATTATTCGAGGAGTTGAAAACTAAAGATACTGTATCGTGGAATTCTATAATTTCCTGCTATCAACATAGTGGAGATGCTTTTGAAAGTTTAAGACTTTTCTATCAAACGCTAATTGAAGACACAGCAGCTTCAGATGAGATAACTATCGTTTCCGTCCTTGGTGCTTGTGAAAAGATTACAGCCTTGCAATTTGGGAAGTCAGTCCATTCATATTTAACTAAAATAGGGCTTTTCTTAAATTCCTTTTTAGGGACTGCCTTTATAGACATGTAGG

Coding sequence (CDS)

ATGCTTCTGATGGCGTGTGGTGATCTGGGTCTTTGTGAAATGGAAATGGAAATTCATTGTCAGGTGGAGGTTTGTGTGTGGGACTCAGATAATGTGAACAATTCTCTTGTAGCAAAAAAGATGTTTGATAAAATGCCTGTGAGCGATTTAACTTCTTGGAATACTATGATTTCAGGTTACGTGAGGAATAACAACGCCATGGAAGCTTTAACGATTATGTATCTAACGGGGAAGTCTGAGTTGAAAGCAGATGGGACTACTTTGCTTGCCCTCCTCACTAGCTTGGCTGCAATTAAGCAGGGGAAGGAAATCCATTGTTATGCTGTACGCAATAATTATTGTACTTTGAATGACTTCTTGATGAACTCGCTGATTGATATGTACTCAAATTGCAGTTCTGTTGCTGCCGCTAGGCAATTATTCGAGGAGTTGAAAACTAAAGATACTGTATCGTGGAATTCTATAATTTCCTGCTATCAACATAGTGGAGATGCTTTTGAAAGTTTAAGACTTTTCTATCAAACGCTAATTGAAGACACAGCAGCTTCAGATGAGATAACTATCGTTTCCGTCCTTGGTGCTTGTGAAAAGATTACAGCCTTGCAATTTGGGAAGTCAGTCCATTCATATTTAACTAAAATAGGGCTTTTCTTAAATTCCTTTTTAGGGACTGCCTTTATAGACATGTAG

Protein sequence

MLLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM
Homology
BLAST of Cmc01g0007631 vs. NCBI nr
Match: XP_016901670.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g63370, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 456.4 bits (1173), Expect = 1.4e-124
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0

Query: 1   MLLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGY 60
           MLLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGY
Sbjct: 1   MLLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGY 60

Query: 61  VRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFL 120
           VRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFL
Sbjct: 61  VRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFL 120

Query: 121 MNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDT 180
           MNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDT
Sbjct: 121 MNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDT 180

Query: 181 AASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 230
           AASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM
Sbjct: 181 AASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 229

BLAST of Cmc01g0007631 vs. NCBI nr
Match: XP_016901669.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 451.1 bits (1159), Expect = 5.9e-123
Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 0

Query: 2   LLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYV 61
           +L ACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYV
Sbjct: 37  VLKACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYV 96

Query: 62  RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLM 121
           RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLM
Sbjct: 97  RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLM 156

Query: 122 NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA 181
           NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA
Sbjct: 157 NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA 216

Query: 182 ASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 230
           ASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM
Sbjct: 217 ASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 264

BLAST of Cmc01g0007631 vs. NCBI nr
Match: XP_016901671.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g63370, chloroplastic-like isoform X3 [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0

Query: 14  MEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIM 73
           MEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIM
Sbjct: 1   MEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIM 60

Query: 74  YLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSS 133
           YLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSS
Sbjct: 61  YLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSS 120

Query: 134 VAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLG 193
           VAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLG
Sbjct: 121 VAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLG 180

Query: 194 ACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 230
           ACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM
Sbjct: 181 ACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 216

BLAST of Cmc01g0007631 vs. NCBI nr
Match: KAA0040268.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK07080.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 392.9 bits (1008), Expect = 1.9e-105
Identity = 198/205 (96.59%), Postives = 200/205 (97.56%), Query Frame = 0

Query: 2   LLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYV 61
           +L ACGDLGLCEMEMEIH QVEVCVWDSDNVNNSLVAK MFDKMPV DLTSWNTMISGYV
Sbjct: 37  VLKACGDLGLCEMEMEIHRQVEVCVWDSDNVNNSLVAKTMFDKMPVRDLTSWNTMISGYV 96

Query: 62  RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLM 121
           RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNY TLNDFLM
Sbjct: 97  RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYFTLNDFLM 156

Query: 122 NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA 181
           NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA
Sbjct: 157 NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA 216

Query: 182 ASDEITIVSVLGACEKITALQFGKS 207
           ASDEITIVSVLGACEKITALQFGK+
Sbjct: 217 ASDEITIVSVLGACEKITALQFGKA 241

BLAST of Cmc01g0007631 vs. NCBI nr
Match: XP_038887372.1 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 360.5 bits (924), Expect = 1.0e-95
Identity = 193/243 (79.42%), Postives = 205/243 (84.36%), Query Frame = 0

Query: 2   LLMACGDLGLCEMEMEIHCQVEVCVWDSD-NVNNSL-----------VAKKMFDKMPVSD 61
           +L ACGDLGL E+ MEIH QVE+C W+SD  VNNSL           VA+K+FDKMP  D
Sbjct: 151 VLKACGDLGLREIGMEIHSQVEICGWESDIYVNNSLLAMYLKFGNVDVARKVFDKMPERD 210

Query: 62  LTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTS---LAAIKQGKEIHC 121
           LTSWNTMISGYVRNNN+MEALTI YL  K  LKADGTTLLALLT+   LAAIKQGKEIHC
Sbjct: 211 LTSWNTMISGYVRNNNSMEALTIFYLMEKGGLKADGTTLLALLTACADLAAIKQGKEIHC 270

Query: 122 YAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAF 181
           YAVRNNY TLN+FLMNSLIDMYSNCS VAAARQLFEELK KDTVSWNSIISC+Q SGDAF
Sbjct: 271 YAVRNNYFTLNEFLMNSLIDMYSNCSCVAAARQLFEELKIKDTVSWNSIISCHQRSGDAF 330

Query: 182 ESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAF 230
           ESLRLF Q L EDTAA DEITIV+VLGACEKI ALQFGKSVHSYLTKIG+FLNSFLGTA 
Sbjct: 331 ESLRLFCQMLTEDTAAPDEITIVAVLGACEKIAALQFGKSVHSYLTKIGIFLNSFLGTAL 390

BLAST of Cmc01g0007631 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.2e-27
Identity = 69/197 (35.03%), Postives = 118/197 (59.90%), Query Frame = 0

Query: 38  AKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLA- 97
           A+K+FD++PV D+ SWN MISGY    N  EAL +     K+ ++ D +T++ ++++ A 
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278

Query: 98  --AIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNS 157
             +I+ G+++H +   + + + N  ++N+LID+YS C  +  A  LFE L  KD +SWN+
Sbjct: 279 SGSIELGRQVHLWIDDHGFGS-NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNT 338

Query: 158 IISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTK- 217
           +I  Y H     E+L LF Q ++      +++T++S+L AC  + A+  G+ +H Y+ K 
Sbjct: 339 LIGGYTHMNLYKEALLLF-QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR 398

Query: 218 -IGLFLNSFLGTAFIDM 230
             G+   S L T+ IDM
Sbjct: 399 LKGVTNASSLRTSLIDM 413

BLAST of Cmc01g0007631 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-26
Identity = 65/195 (33.33%), Postives = 119/195 (61.03%), Query Frame = 0

Query: 38  AKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAA 97
           A+K+FD+MP  DL SWNT+++GY +N  A  AL ++    +  LK    T++++L +++A
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248

Query: 98  ---IKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNS 157
              I  GKEIH YA+R+ + +L + +  +L+DMY+ C S+  ARQLF+ +  ++ VSWNS
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVN-ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNS 308

Query: 158 IISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTKI 217
           +I  Y  + +  E++ L +Q ++++     +++++  L AC  +  L+ G+ +H    ++
Sbjct: 309 MIDAYVQNENPKEAM-LIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVEL 368

Query: 218 GLFLNSFLGTAFIDM 230
           GL  N  +  + I M
Sbjct: 369 GLDRNVSVVNSLISM 381

BLAST of Cmc01g0007631 vs. ExPASy Swiss-Prot
Match: Q9M1V3 (Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-26
Identity = 75/243 (30.86%), Postives = 128/243 (52.67%), Query Frame = 0

Query: 2   LLMACGDLGLCEMEMEIHCQVEVCVWDSD-NVNNSLV-----------AKKMFDKMPVSD 61
           ++ A G L      ME+H  V    WDS+  V N+L+             + F +M   D
Sbjct: 392 IIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKD 451

Query: 62  LTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQ---GKEIHC 121
           L SW T+I+GY +N+  +EAL +     K  ++ D   L ++L + + +K     KEIHC
Sbjct: 452 LISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHC 511

Query: 122 YAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAF 181
           + +R     L+  + N L+D+Y  C ++  A ++FE +K KD VSW S+IS    +G+  
Sbjct: 512 HILRKG--LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNES 571

Query: 182 ESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAF 230
           E++ LF + ++E   ++D + ++ +L A   ++AL  G+ +H YL + G  L   +  A 
Sbjct: 572 EAVELF-RRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAV 631

BLAST of Cmc01g0007631 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-25
Identity = 61/196 (31.12%), Postives = 117/196 (59.69%), Query Frame = 0

Query: 38  AKKMFDKMPVSDLTSWNTMISGYVRNNNAMEAL---TIMYLTGKSELKADGTTLLALLTS 97
           A  +F  MP  D  +WN+M+SG+ +++   EAL    +M+  G    +    ++L+  + 
Sbjct: 105 ADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSG 164

Query: 98  LAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNS 157
           L  + +G ++H    ++ + + + ++ ++L+DMYS C +V  A+++F+E+  ++ VSWNS
Sbjct: 165 LNDMNKGVQVHSLIAKSPFLS-DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNS 224

Query: 158 IISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTKI 217
           +I+C++ +G A E+L +F Q ++E     DE+T+ SV+ AC  ++A++ G+ VH  + K 
Sbjct: 225 LITCFEQNGPAVEALDVF-QMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKN 284

Query: 218 GLFLNS-FLGTAFIDM 230
               N   L  AF+DM
Sbjct: 285 DKLRNDIILSNAFVDM 298

BLAST of Cmc01g0007631 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-25
Identity = 72/225 (32.00%), Postives = 114/225 (50.67%), Query Frame = 0

Query: 38  AKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTS--- 97
           A+K+FD+ PV DL SWN +I+GY +   A +A+ +  L     +K D  T++ L++S   
Sbjct: 210 ARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSM 269

Query: 98  LAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNS 157
           L  + +GKE + Y V+ N   +   L+N+L+DM+S C  +  AR++F+ L+ +  VSW +
Sbjct: 270 LGDLNRGKEFYEY-VKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTT 329

Query: 158 IISCYQHSGDAFESLRLF------------------------------YQTLIEDTAASD 217
           +IS Y   G    S +LF                              +Q +       D
Sbjct: 330 MISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPD 389

Query: 218 EITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 230
           EIT++  L AC ++ AL  G  +H Y+ K  L LN  LGT+ +DM
Sbjct: 390 EITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDM 433

BLAST of Cmc01g0007631 vs. ExPASy TrEMBL
Match: A0A1S4E107 (pentatricopeptide repeat-containing protein At3g63370, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495572 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 6.8e-125
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0

Query: 1   MLLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGY 60
           MLLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGY
Sbjct: 1   MLLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGY 60

Query: 61  VRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFL 120
           VRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFL
Sbjct: 61  VRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFL 120

Query: 121 MNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDT 180
           MNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDT
Sbjct: 121 MNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDT 180

Query: 181 AASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 230
           AASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM
Sbjct: 181 AASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 229

BLAST of Cmc01g0007631 vs. ExPASy TrEMBL
Match: A0A1S4E0C9 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495572 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.9e-123
Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 0

Query: 2   LLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYV 61
           +L ACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYV
Sbjct: 37  VLKACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYV 96

Query: 62  RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLM 121
           RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLM
Sbjct: 97  RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLM 156

Query: 122 NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA 181
           NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA
Sbjct: 157 NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA 216

Query: 182 ASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 230
           ASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM
Sbjct: 217 ASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 264

BLAST of Cmc01g0007631 vs. ExPASy TrEMBL
Match: A0A1S4E0B7 (pentatricopeptide repeat-containing protein At3g63370, chloroplastic-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103495572 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.2e-117
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0

Query: 14  MEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIM 73
           MEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIM
Sbjct: 1   MEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIM 60

Query: 74  YLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSS 133
           YLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSS
Sbjct: 61  YLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSS 120

Query: 134 VAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLG 193
           VAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLG
Sbjct: 121 VAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLG 180

Query: 194 ACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 230
           ACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM
Sbjct: 181 ACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 216

BLAST of Cmc01g0007631 vs. ExPASy TrEMBL
Match: A0A5A7TBH8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003980 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.2e-106
Identity = 198/205 (96.59%), Postives = 200/205 (97.56%), Query Frame = 0

Query: 2   LLMACGDLGLCEMEMEIHCQVEVCVWDSDNVNNSLVAKKMFDKMPVSDLTSWNTMISGYV 61
           +L ACGDLGLCEMEMEIH QVEVCVWDSDNVNNSLVAK MFDKMPV DLTSWNTMISGYV
Sbjct: 37  VLKACGDLGLCEMEMEIHRQVEVCVWDSDNVNNSLVAKTMFDKMPVRDLTSWNTMISGYV 96

Query: 62  RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYCTLNDFLM 121
           RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNY TLNDFLM
Sbjct: 97  RNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQGKEIHCYAVRNNYFTLNDFLM 156

Query: 122 NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA 181
           NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA
Sbjct: 157 NSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAFESLRLFYQTLIEDTA 216

Query: 182 ASDEITIVSVLGACEKITALQFGKS 207
           ASDEITIVSVLGACEKITALQFGK+
Sbjct: 217 ASDEITIVSVLGACEKITALQFGKA 241

BLAST of Cmc01g0007631 vs. ExPASy TrEMBL
Match: A0A6J1GMH0 (putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455614 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 7.3e-95
Identity = 189/243 (77.78%), Postives = 204/243 (83.95%), Query Frame = 0

Query: 2   LLMACGDLGLCEMEMEIHCQVEVCVWDSD-NVNNSL-----------VAKKMFDKMPVSD 61
           +L ACGDLGL EM  EIH QVEVC WDSD  VNNSL           VA+K+FDKMP  D
Sbjct: 150 VLKACGDLGLSEMGREIHTQVEVCGWDSDVYVNNSLLAMYLKFGNLDVARKVFDKMPDRD 209

Query: 62  LTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTS---LAAIKQGKEIHC 121
            TSWNT+ISGYVRNNNAMEAL I YL GK+ LKADGTTLLALL++   LAAIKQGKEIHC
Sbjct: 210 TTSWNTLISGYVRNNNAMEALMIFYLMGKAGLKADGTTLLALLSACVDLAAIKQGKEIHC 269

Query: 122 YAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAF 181
           YA+RNNY + N+FLMNSLIDMYSNC+SVA ARQLFEELK KDTVSWNSIISCYQ SGDAF
Sbjct: 270 YAIRNNYVSSNEFLMNSLIDMYSNCNSVAVARQLFEELKIKDTVSWNSIISCYQRSGDAF 329

Query: 182 ESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAF 230
           ESLRLF Q LIE+TAA DEIT+V+VLGACEKITALQFGKSVHSYLTK G+FLNSFLGTA 
Sbjct: 330 ESLRLFCQMLIEETAAPDEITLVAVLGACEKITALQFGKSVHSYLTKTGIFLNSFLGTAL 389

BLAST of Cmc01g0007631 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 5.8e-28
Identity = 69/197 (35.03%), Postives = 118/197 (59.90%), Query Frame = 0

Query: 38  AKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLA- 97
           A+K+FD++PV D+ SWN MISGY    N  EAL +     K+ ++ D +T++ ++++ A 
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278

Query: 98  --AIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNS 157
             +I+ G+++H +   + + + N  ++N+LID+YS C  +  A  LFE L  KD +SWN+
Sbjct: 279 SGSIELGRQVHLWIDDHGFGS-NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNT 338

Query: 158 IISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTK- 217
           +I  Y H     E+L LF Q ++      +++T++S+L AC  + A+  G+ +H Y+ K 
Sbjct: 339 LIGGYTHMNLYKEALLLF-QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR 398

Query: 218 -IGLFLNSFLGTAFIDM 230
             G+   S L T+ IDM
Sbjct: 399 LKGVTNASSLRTSLIDM 413

BLAST of Cmc01g0007631 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-27
Identity = 65/195 (33.33%), Postives = 119/195 (61.03%), Query Frame = 0

Query: 38  AKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAA 97
           A+K+FD+MP  DL SWNT+++GY +N  A  AL ++    +  LK    T++++L +++A
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248

Query: 98  ---IKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNS 157
              I  GKEIH YA+R+ + +L + +  +L+DMY+ C S+  ARQLF+ +  ++ VSWNS
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVN-ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNS 308

Query: 158 IISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTKI 217
           +I  Y  + +  E++ L +Q ++++     +++++  L AC  +  L+ G+ +H    ++
Sbjct: 309 MIDAYVQNENPKEAM-LIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVEL 368

Query: 218 GLFLNSFLGTAFIDM 230
           GL  N  +  + I M
Sbjct: 369 GLDRNVSVVNSLISM 381

BLAST of Cmc01g0007631 vs. TAIR 10
Match: AT3G63370.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-27
Identity = 75/243 (30.86%), Postives = 128/243 (52.67%), Query Frame = 0

Query: 2   LLMACGDLGLCEMEMEIHCQVEVCVWDSD-NVNNSLV-----------AKKMFDKMPVSD 61
           ++ A G L      ME+H  V    WDS+  V N+L+             + F +M   D
Sbjct: 392 IIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKD 451

Query: 62  LTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTSLAAIKQ---GKEIHC 121
           L SW T+I+GY +N+  +EAL +     K  ++ D   L ++L + + +K     KEIHC
Sbjct: 452 LISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHC 511

Query: 122 YAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNSIISCYQHSGDAF 181
           + +R     L+  + N L+D+Y  C ++  A ++FE +K KD VSW S+IS    +G+  
Sbjct: 512 HILRKG--LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNES 571

Query: 182 ESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAF 230
           E++ LF + ++E   ++D + ++ +L A   ++AL  G+ +H YL + G  L   +  A 
Sbjct: 572 EAVELF-RRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAV 631

BLAST of Cmc01g0007631 vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 116.3 bits (290), Expect = 3.2e-26
Identity = 72/225 (32.00%), Postives = 114/225 (50.67%), Query Frame = 0

Query: 38  AKKMFDKMPVSDLTSWNTMISGYVRNNNAMEALTIMYLTGKSELKADGTTLLALLTS--- 97
           A+K+FD+ PV DL SWN +I+GY +   A +A+ +  L     +K D  T++ L++S   
Sbjct: 210 ARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSM 269

Query: 98  LAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNS 157
           L  + +GKE + Y V+ N   +   L+N+L+DM+S C  +  AR++F+ L+ +  VSW +
Sbjct: 270 LGDLNRGKEFYEY-VKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTT 329

Query: 158 IISCYQHSGDAFESLRLF------------------------------YQTLIEDTAASD 217
           +IS Y   G    S +LF                              +Q +       D
Sbjct: 330 MISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPD 389

Query: 218 EITIVSVLGACEKITALQFGKSVHSYLTKIGLFLNSFLGTAFIDM 230
           EIT++  L AC ++ AL  G  +H Y+ K  L LN  LGT+ +DM
Sbjct: 390 EITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDM 433

BLAST of Cmc01g0007631 vs. TAIR 10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.2e-26
Identity = 61/196 (31.12%), Postives = 117/196 (59.69%), Query Frame = 0

Query: 38  AKKMFDKMPVSDLTSWNTMISGYVRNNNAMEAL---TIMYLTGKSELKADGTTLLALLTS 97
           A  +F  MP  D  +WN+M+SG+ +++   EAL    +M+  G    +    ++L+  + 
Sbjct: 105 ADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSG 164

Query: 98  LAAIKQGKEIHCYAVRNNYCTLNDFLMNSLIDMYSNCSSVAAARQLFEELKTKDTVSWNS 157
           L  + +G ++H    ++ + + + ++ ++L+DMYS C +V  A+++F+E+  ++ VSWNS
Sbjct: 165 LNDMNKGVQVHSLIAKSPFLS-DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNS 224

Query: 158 IISCYQHSGDAFESLRLFYQTLIEDTAASDEITIVSVLGACEKITALQFGKSVHSYLTKI 217
           +I+C++ +G A E+L +F Q ++E     DE+T+ SV+ AC  ++A++ G+ VH  + K 
Sbjct: 225 LITCFEQNGPAVEALDVF-QMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKN 284

Query: 218 GLFLNS-FLGTAFIDM 230
               N   L  AF+DM
Sbjct: 285 DKLRNDIILSNAFVDM 298

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016901670.11.4e-124100.00PREDICTED: pentatricopeptide repeat-containing protein At3g63370, chloroplastic-... [more]
XP_016901669.15.9e-12399.12PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic-... [more]
XP_016901671.11.1e-116100.00PREDICTED: pentatricopeptide repeat-containing protein At3g63370, chloroplastic-... [more]
KAA0040268.11.9e-10596.59pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK07080... [more]
XP_038887372.11.0e-9579.42pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benin... [more]
Match NameE-valueIdentityDescription
Q9LN018.2e-2735.03Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q3E6Q11.4e-2633.33Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
Q9M1V32.4e-2630.86Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidop... [more]
Q9SIT74.5e-2531.12Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX... [more]
Q9SJZ34.5e-2532.00Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A1S4E1076.8e-125100.00pentatricopeptide repeat-containing protein At3g63370, chloroplastic-like isofor... [more]
A0A1S4E0C92.9e-12399.12pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like isofor... [more]
A0A1S4E0B75.2e-117100.00pentatricopeptide repeat-containing protein At3g63370, chloroplastic-like isofor... [more]
A0A5A7TBH89.2e-10696.59Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1GMH07.3e-9577.78putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS... [more]
Match NameE-valueIdentityDescription
AT1G08070.15.8e-2835.03Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G11290.11.0e-2733.33Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G63370.11.7e-2730.86Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G22410.13.2e-2632.00SLOW GROWTH 1 [more]
AT2G13600.13.2e-2631.12Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 102..210
e-value: 6.0E-15
score: 57.0
coord: 1..101
e-value: 3.2E-8
score: 35.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 52..72
e-value: 1.8E-4
score: 21.5
coord: 121..147
e-value: 0.066
score: 13.5
coord: 150..173
e-value: 0.005
score: 17.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 52..73
e-value: 8.2E-4
score: 17.4
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 2..229
NoneNo IPR availablePANTHERPTHR47928:SF41SUBFAMILY NOT NAMEDcoord: 2..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0007631.1Cmc01g0007631.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding