Cmc01g0007511 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0007511
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Geranylgeranyl transferase type-2 subunit beta-like
Location	CMiso1.1chr01: 2830782 .. 2832940 (-)
RNA-Seq Expression	Cmc01g0007511
Synteny	Cmc01g0007511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTGAGTGATGAGATTTCTCTTGTACTTCAAAACAATTTGTGTTGCTTACTTCTCTTACGATGTTTGGTACTATCCTGCTTGGACATTGAAATTGCATTTGTATTAGTGCATATTTATGCTCTTTGATTGCTCAAGTCTTATGAATCAAAATTTACTTATCAATTGTTTTAGGTTTCGTGTCTTAATGTCAGGTTCTGCTGTGATGTCAGTTTTCTGTTGTGTTGGCTCGCTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGGCTTGTGGTTATGTGAGCGGCAAATCAAATCTGGAGGTCCTCGTGGTCGACCCGAGAAACTTCCTGAATGTGGTTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGCTACTCACGGTGGGTTCTTTCGAACTTGATCATGATTGACAGAGTTTACTGGATTAATAAGGAAAAACTGAATAACTGAAGGAAGATCCTAAACCTAAAAGGAAGATGAAAATTAAGTTCATCTTAGACTGTCAGTTTGTTAAGCCAAATCTTCTTTGTCTAGATTGGATTTATGTATAAGGGGTAATTATATTGCTTTTAACGAAGGTAACTTCCATAACATAACATAACTATTGAAAGTTTCAGGACACAGAAAATGGTGGTATTTCAGACAGATCGGATGGTGCTGTTGATGTCTACCACACATACCACACATGCTTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCCTCCAATGCTATTGATTGAATTAAATTATTATTCTTTCAGAGATTAGACAATGCATGCATGTATGTAATTGTTTCACCTTGTTTTTCTATGTAGATGTCTGTTTCCTTTTAAATTTAGTGAATGACAATACTTTTATTAAGCCTGACAATATCACAGGGATACTTGCTGTAGCTTACTATAGAATGAGTCATTTTATATGTAGCAGTTGAACATAAAGTTCCTTTACAATAAGAAATGAAAACGGGAAGACTTGTGTGGTCTATGAAATCTTCCTTTAGGTGTTAATCGGGATTTTGCCACCTGCTCCTTACAAAAAGAAGTATCATGTCCAAAAATAGACTAAAGTTCCTAGTGTTAGTTGCAAAAAAGTTCTGAAACTAGGAAATCCCAGATGAATTGAAATCAGGAACTTTCGGGTACACGAACAACTGATTTTTAAGCGTTTAGAGTACGTTTAGAGAAATAAATTGGTTATCGTAGTCTTGGGTATATTATGGTTGAACTATAATAGTTTGTACAATTATTTTAGCCTGGTTTTAAAGAACTTAATTGATGTGTAAACTATTTTAATTTTAGAATAAAAAAATCTATTACATATTAATATTAATCTCACTTAGTCAAAAAGTTAAATCATAAAATATTTTAATTACATCTCCAAATCTTCAGTGAGAAAGGAAAGTCTTTTGATGTGGAGCCTTGAACATCCAATTTCCAAAACCACAGTAGAGCTCTAGCAGCTAATTGATGTTAGATCTTTATTATATATCCAATGACACAATCAAAACTTTTGAAATTTAAAGCATAAAGAAAAGGATTTAGATACTGTGGTGCTGTGTATGTACAGATTCTTTCTTCCTAAGCTGCAGTTGGTTGATAAATATAAGACAATATTTCACGTGAAAAAACTTTGGAATTGTTTTTTGATGCAGTGCAGAGAAATCCAGAAGAGTGTGTATGGGAAGGGAACAGAACATCCATTAATGGGCGTTAATTTGGTGTGAAGTCAGGGCAATAAACAATAAATAGGCAGAGCTGATCCGAGCGGATAAGCTCCTGAAAGAGGTGTGTCCACTGATTTTGAGAGTGCCATCATCATTAACCATTGTAAGTCATCATCCCTTCTCCATGCCCATGCCTGTACTTACTCTCTCCTGCTTTACGCCACCATCCCCTCCCCCTCCCCCTCCCCATTCTGTCTTCTTTAACCTGACACTACTCTCTCTTTCACTTTCATTTCTATCACTCCTCACCCTCTTCTTTTTCTGCCAATGTTCATCGCTACTCCATTTACTATTCACTCACTCCTCTCAAAAGATTATTATATGTTTTAATTATGTTACGAGGAAAATCATCTTGTGGAT

mRNA sequence

GTCTGAGTGATGAGATTTCTCTTGTACTTCAAAACAATTTGTGTTGCTTACTTCTCTTACGATGTTTGGTACTATCCTGCTTGGACATTGAAATTGCATTTGTATTAGTGCATATTTATGCTCTTTGATTGCTCAAGTCTTATGAATCAAAATTTACTTATCAATTGTTTTAGGTTTCGTGTCTTAATGTCAGGTTCTGCTGTGATGTCAGTTTTCTGTTGTGTTGGCTCGCTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGGCTTGTGGTTATGTGAGCGGCAAATCAAATCTGGAGGTCCTCGTGGTCGACCCGAGAAACTTCCTGAATGTGGTTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGCTACTCACGGACACAGAAAATGGTGGTATTTCAGACAGATCGGATGGTGCTGTTGATGTCTACCACACATACCACACATGCTTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCCTCCAATGCTATTGATTGAATTAAATTATTATTCTTTCAGAGATTAGACAATGCATGCATGTATGTAATTGTTTCACCTTGTTTTTCTATGTAGATGTCTGTTTCCTTTTAAATTTAGTGAATGACAATACTTTTATTAAGCCTGACAATATCACAGGGATACTTGCTGTAGCTTACTATAGAATGAGTCATTTTATATGTAGCAGTTGAACATAAAGTTCCTTTACAATAAGAAATGAAAACGGGAAGACTTGTGTGGTCTATGAAATCTTCCTTTAGGTGTTAATCGGGATTTTGCCACCTGCTCCTTACAAAAAGAAGTATCATGTCCAAAAATAGACTAAAGTTCCTAGTGTTAGTTGCAAAAAAGTTCTGAAACTAGGAAATCCCAGATGAATTGAAATCAGGAACTTTCGGGTACACGAACAACTGATTTTTAAGCGTTTAGAGTACGTTTAGAGAAATAAATTGGTTATCGTAGTCTTGGGTATATTATGGTTGAACTATAATAGTTTGTACAATTATTTTAGCCTGGTTTTAAAGAACTTAATTGATGTGTAAACTATTTTAATTTTAGAATAAAAAAATCTATTACATATTAATATTAATCTCACTTAGTCAAAAAGTTAAATCATAAAATATTTTAATTACATCTCCAAATCTTCAGTGAGAAAGGAAAGTCTTTTGATGTGGAGCCTTGAACATCCAATTTCCAAAACCACAGTAGAGCTCTAGCAGCTAATTGATGTTAGATCTTTATTATATATCCAATGACACAATCAAAACTTTTGAAATTTAAAGCATAAAGAAAAGGATTTAGATACTGTGGTGCTGTGTATGTACAGATTCTTTCTTCCTAAGCTGCAGTTGGTTGATAAATATAAGACAATATTTCACGTGAAAAAACTTTGGAATTGTTTTTTGATGCAGTGCAGAGAAATCCAGAAGAGTGTGTATGGGAAGGGAACAGAACATCCATTAATGGGCGTTAATTTGGTGTGAAGTCAGGGCAATAAACAATAAATAGGCAGAGCTGATCCGAGCGGATAAGCTCCTGAAAGAGGTGTGTCCACTGATTTTGAGAGTGCCATCATCATTAACCATTGTAAGTCATCATCCCTTCTCCATGCCCATGCCTGTACTTACTCTCTCCTGCTTTACGCCACCATCCCCTCCCCCTCCCCCTCCCCATTCTGTCTTCTTTAACCTGACACTACTCTCTCTTTCACTTTCATTTCTATCACTCCTCACCCTCTTCTTTTTCTGCCAATGTTCATCGCTACTCCATTTACTATTCACTCACTCCTCTCAAAAGATTATTATATGTTTTAATTATGTTACGAGGAAAATCATCTTGTGGAT

Coding sequence (CDS)

ATGCTCTTTGATTGCTCAAGTCTTATGAATCAAAATTTACTTATCAATTGTTTTAGGTTTCGTGTCTTAATGTCAGGTTCTGCTGTGATGTCAGTTTTCTGTTGTGTTGGCTCGCTTGCTATAATGGGTTCTCTACAACATATTGACAAGGATCTCCTTGGCTTGTGGTTATGTGAGCGGCAAATCAAATCTGGAGGTCCTCGTGGTCGACCCGAGAAACTTCCTGAATGTGGTTTCGAACTCCTATTACATACTCTAACCAATTCTTGGCTTGGAAGTTATTCATACTCTCCCACTCACCAACTTCATTGTGTTGCTTCAGTTTTGCTACTCACGGACACAGAAAATGGTGGTATTTCAGACAGATCGGATGGTGCTGTTGATGTCTACCACACATACCACACATGCTTGAACAGAATTTTCTTGAGCAAAAAAATAGTATCCTCCAATGCTATTGATTGA

Protein sequence

MLFDCSSLMNQNLLINCFRFRVLMSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLTDTENGGISDRSDGAVDVYHTYHTCLNRIFLSKKIVSSNAID

Homology

[Close]

BLAST of Cmc01g0007511 vs. NCBI nr
Match: KAA0031621.1 (geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa] >TYK07073.1 geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 6.0e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 20  FRVLMSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGF 79
           FRVLMSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGF
Sbjct: 21  FRVLMSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGF 80

Query: 80  ELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLT 113
           ELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLT
Sbjct: 81  ELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLT 113

[Close]

BLAST of Cmc01g0007511 vs. NCBI nr
Match: KAB1210110.1 (Geranylgeranyl transferase type-2 subunit beta [Morella rubra])

HSP 1 Score: 120.9 bits (302), Expect = 9.3e-24
Identity = 64/123 (52.03%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWL 91
           +FCCVG+LAIMGSL HIDKDLLG WLCERQ++SGG  GRPEKLP+  +         SW 
Sbjct: 154 IFCCVGALAIMGSLHHIDKDLLGWWLCERQVQSGGLNGRPEKLPDVCY---------SWW 213

Query: 92  GSYSYSPTHQLHCVAS------VLLLTDTENGGISDRSDGAVDVYHTYHTCLNRIFLSKK 149
              S     ++H ++       +L   DTENGGISDR D AVDVYHTY       FL K 
Sbjct: 214 VLSSLIMIDRVHWISKEKLIKYILDCQDTENGGISDRPDDAVDVYHTYFGVAEFAFLPKA 267

[Close]

BLAST of Cmc01g0007511 vs. NCBI nr
Match: XP_038887312.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-23
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE-CGFELLLHTLTNSW 91
           +FCCVG+LAIMGSL HIDKDLLG WLCERQ+KSGG  GRPEKLP+ C    +L +L    
Sbjct: 141 IFCCVGALAIMGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI--M 200

Query: 92  LGSYSYSPTHQLHCVASVLLLTDTENGGISDRSDGAVDVYHTY 134
           +G   +    +L  +  +L   DTENGGISDR D AVDVYHTY
Sbjct: 201 IGRVHWINKEKL--IKFILDCQDTENGGISDRPDDAVDVYHTY 239

[Close]

BLAST of Cmc01g0007511 vs. NCBI nr
Match: XP_038887307.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887308.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887309.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-23
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE-CGFELLLHTLTNSW 91
           +FCCVG+LAIMGSL HIDKDLLG WLCERQ+KSGG  GRPEKLP+ C    +L +L    
Sbjct: 180 IFCCVGALAIMGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI--M 239

Query: 92  LGSYSYSPTHQLHCVASVLLLTDTENGGISDRSDGAVDVYHTY 134
           +G   +    +L  +  +L   DTENGGISDR D AVDVYHTY
Sbjct: 240 IGRVHWINKEKL--IKFILDCQDTENGGISDRPDDAVDVYHTY 278

[Close]

BLAST of Cmc01g0007511 vs. NCBI nr
Match: XP_038887310.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida] >XP_038887311.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-23
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPE-CGFELLLHTLTNSW 91
           +FCCVG+LAIMGSL HIDKDLLG WLCERQ+KSGG  GRPEKLP+ C    +L +L    
Sbjct: 154 IFCCVGALAIMGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI--M 213

Query: 92  LGSYSYSPTHQLHCVASVLLLTDTENGGISDRSDGAVDVYHTY 134
           +G   +    +L  +  +L   DTENGGISDR D AVDVYHTY
Sbjct: 214 IGRVHWINKEKL--IKFILDCQDTENGGISDRPDDAVDVYHTY 252

[Close]

BLAST of Cmc01g0007511 vs. ExPASy Swiss-Prot
Match: Q84J75 (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702 GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.5e-21
Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWL 91
           +FCCVG+LAI GSL H+DKD LG WLCERQ+K+GG  GRPEKL +  +         SW 
Sbjct: 188 IFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCY---------SWW 247

Query: 92  GSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVDVYHTY 134
              S     ++H       V  +L   D +NGGISDR + AVD++HTY
Sbjct: 248 VLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTY 286

[Close]

BLAST of Cmc01g0007511 vs. ExPASy Swiss-Prot
Match: Q9LHL5 (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702 GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.4e-19
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEKLPECGFELLLHTLTNSW 91
           +FCCVG+LAI G+L  +DKDLLG WLCERQ  +SGG  GRPEKLP+  +         SW
Sbjct: 183 IFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDVCY---------SW 242

Query: 92  LGSYSYSPTHQLHCVASVLLL------TDTENGGISDRSDGAVDVYHTY 134
               S     ++H +    L+       D +NGGISDR    VD++HTY
Sbjct: 243 WVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTY 282

[Close]

BLAST of Cmc01g0007511 vs. ExPASy Swiss-Prot
Match: Q5E9B3 (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-15
Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 25  SGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLH 84
           S S    ++CC G LAI   L  ++ DLLG WLCERQ+ SGG  GRPEKLP+  +     
Sbjct: 187 SESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCY----- 246

Query: 85  TLTNSWLGSYSYSPTHQLHCV------ASVLLLTDTENGGISDRSDGAVDVYHT 133
               SW    S     +LH +      + +L   D E GG +DR    VD +HT
Sbjct: 247 ----SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHT 291

[Close]

BLAST of Cmc01g0007511 vs. ExPASy Swiss-Prot
Match: P53612 (Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabggtb PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-15
Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 25  SGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLH 84
           S S    ++CC G LAI   L  ++ DLLG WLCERQ+ SGG  GRPEKLP+  +     
Sbjct: 195 SESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCY----- 254

Query: 85  TLTNSWLGSYSYSPTHQLHCV------ASVLLLTDTENGGISDRSDGAVDVYHT 133
               SW    S     +LH +      + +L   D E GG +DR    VD +HT
Sbjct: 255 ----SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHT 299

[Close]

BLAST of Cmc01g0007511 vs. ExPASy Swiss-Prot
Match: Q08603 (Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus OX=10116 GN=Rabggtb PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-15
Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 25  SGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLH 84
           S S    ++CC G LAI   L  ++ DLLG WLCERQ+ SGG  GRPEKLP+  +     
Sbjct: 187 SESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCY----- 246

Query: 85  TLTNSWLGSYSYSPTHQLHCV------ASVLLLTDTENGGISDRSDGAVDVYHT 133
               SW    S     +LH +      + +L   D E GG +DR    VD +HT
Sbjct: 247 ----SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHT 291

[Close]

BLAST of Cmc01g0007511 vs. ExPASy TrEMBL
Match: A0A5A7SQ05 (Geranylgeranyl transferase type-2 subunit beta-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003910 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.9e-47
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 20  FRVLMSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGF 79
           FRVLMSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGF
Sbjct: 21  FRVLMSGSAVMSVFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGF 80

Query: 80  ELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLT 113
           ELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLT
Sbjct: 81  ELLLHTLTNSWLGSYSYSPTHQLHCVASVLLLT 113

[Close]

BLAST of Cmc01g0007511 vs. ExPASy TrEMBL
Match: A0A6A1VGA1 (Geranylgeranyl transferase type-2 subunit beta OS=Morella rubra OX=262757 GN=CJ030_MR6G003924 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.5e-24
Identity = 64/123 (52.03%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWL 91
           +FCCVG+LAIMGSL HIDKDLLG WLCERQ++SGG  GRPEKLP+  +         SW 
Sbjct: 154 IFCCVGALAIMGSLHHIDKDLLGWWLCERQVQSGGLNGRPEKLPDVCY---------SWW 213

Query: 92  GSYSYSPTHQLHCVAS------VLLLTDTENGGISDRSDGAVDVYHTYHTCLNRIFLSKK 149
              S     ++H ++       +L   DTENGGISDR D AVDVYHTY       FL K 
Sbjct: 214 VLSSLIMIDRVHWISKEKLIKYILDCQDTENGGISDRPDDAVDVYHTYFGVAEFAFLPKA 267

[Close]

BLAST of Cmc01g0007511 vs. ExPASy TrEMBL
Match: A0A7J7G0Z0 (Geranylgeranyl transferase type-2 subunit beta OS=Camellia sinensis OX=4442 GN=HYC85_030534 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.0e-23
Identity = 62/125 (49.60%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWL 91
           +FCCVG+LAI GSL HIDK+LLG WLCERQ+KSGG  GRPEKLP+ G+      +  SW 
Sbjct: 223 IFCCVGALAITGSLHHIDKNLLGWWLCERQVKSGGLNGRPEKLPDVGYSFEKCYVCYSWW 282

Query: 92  GSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVDVYHTYHTCLNRIFLSKK 151
              S     ++H       V  +L   D E GGISDR D AVDV+HTY     RI  +  
Sbjct: 283 VLSSLIIIDRVHWIDKEKLVKYILDCQDKEKGGISDRPDDAVDVFHTYFGVAVRIIWALH 342

[Close]

BLAST of Cmc01g0007511 vs. ExPASy TrEMBL
Match: A0A6J1C294 (Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN=LOC111007801 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 8.5e-23
Identity = 61/108 (56.48%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWL 91
           +FCCVG+LAI GSL HIDKDLLG WLCERQ+KSGG  GRPEKLP+  +         SW 
Sbjct: 180 IFCCVGALAITGSLHHIDKDLLGWWLCERQVKSGGLNGRPEKLPDVCY---------SWW 239

Query: 92  GSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVDVYHTY 134
              S     ++H       V  +L   DTENGGISDR D AVDVYHTY
Sbjct: 240 VLSSLIMIDRVHWIDKEKLVKFILDCQDTENGGISDRPDDAVDVYHTY 278

[Close]

BLAST of Cmc01g0007511 vs. ExPASy TrEMBL
Match: A0A2K1XZ98 (Geranylgeranyl transferase type-2 subunit beta OS=Populus trichocarpa OX=3694 GN=POPTR_013G012500 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 8.5e-23
Identity = 60/108 (55.56%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWL 91
           +FCCVG+LAI GSL H+DKDLLG WLCERQ+KSGG  GRPEKLP+  +         SW 
Sbjct: 180 IFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCY---------SWW 239

Query: 92  GSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVDVYHTY 134
              S     ++H       V  +L   DTENGGISDR D AVDVYHTY
Sbjct: 240 VLSSLIMIDRVHWINKDKLVKFILNCQDTENGGISDRPDDAVDVYHTY 278

[Close]

BLAST of Cmc01g0007511 vs. TAIR 10
Match: AT5G12210.1 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-22
Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWL 91
           +FCCVG+LAI GSL H+DKD LG WLCERQ+K+GG  GRPEKL +  +         SW 
Sbjct: 188 IFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCY---------SWW 247

Query: 92  GSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVDVYHTY 134
              S     ++H       V  +L   D +NGGISDR + AVD++HTY
Sbjct: 248 VLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTY 286

[Close]

BLAST of Cmc01g0007511 vs. TAIR 10
Match: AT5G12210.2 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-22
Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQIKSGGPRGRPEKLPECGFELLLHTLTNSWL 91
           +FCCVG+LAI GSL H+DKD LG WLCERQ+K+GG  GRPEKL +  +         SW 
Sbjct: 187 IFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCY---------SWW 246

Query: 92  GSYSYSPTHQLH------CVASVLLLTDTENGGISDRSDGAVDVYHTY 134
              S     ++H       V  +L   D +NGGISDR + AVD++HTY
Sbjct: 247 VLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTY 285

[Close]

BLAST of Cmc01g0007511 vs. TAIR 10
Match: AT3G12070.1 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-20
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEKLPECGFELLLHTLTNSW 91
           +FCCVG+LAI G+L  +DKDLLG WLCERQ  +SGG  GRPEKLP+  +         SW
Sbjct: 183 IFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDVCY---------SW 242

Query: 92  LGSYSYSPTHQLHCVASVLLL------TDTENGGISDRSDGAVDVYHTY 134
               S     ++H +    L+       D +NGGISDR    VD++HTY
Sbjct: 243 WVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTY 282

[Close]

BLAST of Cmc01g0007511 vs. TAIR 10
Match: AT3G12070.2 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-20
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 32  VFCCVGSLAIMGSLQHIDKDLLGLWLCERQ-IKSGGPRGRPEKLPECGFELLLHTLTNSW 91
           +FCCVG+LAI G+L  +DKDLLG WLCERQ  +SGG  GRPEKLP+  +         SW
Sbjct: 183 IFCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDVCY---------SW 242

Query: 92  LGSYSYSPTHQLHCVASVLLL------TDTENGGISDRSDGAVDVYHTY 134
               S     ++H +    L+       D +NGGISDR    VD++HTY
Sbjct: 243 WVLSSLIMIDRVHWIEKAKLVKFILDSQDMDNGGISDRPSYTVDIFHTY 282

The following BLAST results are available for this feature:

BLAST of Cmc01g0007511 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031621.1	6.0e-47	100.00	geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa] >...	[more]
KAB1210110.1	9.3e-24	52.03	Geranylgeranyl transferase type-2 subunit beta [Morella rubra]	[more]
XP_038887312.1	2.7e-23	60.19	geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hisp...	[more]
XP_038887307.1	2.7e-23	60.19	geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hisp...	[more]
XP_038887310.1	2.7e-23	60.19	geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hisp...	[more]

BLAST of Cmc01g0007511 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J75	4.5e-21	48.15	Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LHL5	9.4e-19	45.87	Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q5E9B3	3.7e-15	39.47	Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB ...	[more]
P53612	3.7e-15	39.47	Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabgg...	[more]
Q08603	3.7e-15	39.47	Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus OX=10116 GN=...	[more]

BLAST of Cmc01g0007511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQ05	2.9e-47	100.00	Geranylgeranyl transferase type-2 subunit beta-like OS=Cucumis melo var. makuwa ...	[more]
A0A6A1VGA1	4.5e-24	52.03	Geranylgeranyl transferase type-2 subunit beta OS=Morella rubra OX=262757 GN=CJ0...	[more]
A0A7J7G0Z0	5.0e-23	49.60	Geranylgeranyl transferase type-2 subunit beta OS=Camellia sinensis OX=4442 GN=H...	[more]
A0A6J1C294	8.5e-23	56.48	Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN...	[more]
A0A2K1XZ98	8.5e-23	55.56	Geranylgeranyl transferase type-2 subunit beta OS=Populus trichocarpa OX=3694 GN...	[more]

BLAST of Cmc01g0007511 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12210.1	3.2e-22	48.15	RAB geranylgeranyl transferase beta subunit 1	[more]
AT5G12210.2	3.2e-22	48.15	RAB geranylgeranyl transferase beta subunit 1	[more]
AT3G12070.1	6.7e-20	45.87	RAB geranylgeranyl transferase beta subunit 2	[more]
AT3G12070.2	6.7e-20	45.87	RAB geranylgeranyl transferase beta subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.50.10.20		coord: 21..150 e-value: 2.8E-17 score: 64.6
None	No IPR available	PANTHER	PTHR11774:SF15	GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA	coord: 28..135
IPR045089	Prenyltransferase subunit beta	PANTHER	PTHR11774	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	coord: 28..135
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 24..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0007511.1	Cmc01g0007511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018342	protein prenylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0008318	protein prenyltransferase activity