Cmc00g0001461 (gene) Melon (Charmono) v1.1

Overview
NameCmc00g0001461
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionATP synthase subunit c, chloroplastic
LocationCMiso1.1chr00: 1480991 .. 1481149 (-)
RNA-Seq ExpressionCmc00g0001461
SyntenyCmc00g0001461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTGA

mRNA sequence

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTGA

Coding sequence (CDS)

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTGA

Protein sequence

MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Homology
[Close]
BLAST of Cmc00g0001461 vs. NCBI nr
Match: ARV78259.1 (ATP synthase CF0 C subunit [Aneura pinguis] >ASN73860.1 ATP synthase CF0 C subunit [Aneura pinguis])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. NCBI nr
Match: YP_009682225.1 (ATP synthase CF0 subunit III [Fissidens nobilis] >YP_009867577.1 ATP synthase CF0 subunit III [Drepanocladus aduncus] >QDQ38697.1 ATP synthase CF0 subunit III [Fissidens nobilis] >QKG04822.1 ATP synthase CF0 subunit III [Drepanocladus aduncus])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. NCBI nr
Match: YP_009988672.1 (ATP synthase III subunit [Myuroclada maximowiczii] >QNM39984.1 ATP synthase III subunit [Myuroclada maximowiczii])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. NCBI nr
Match: YP_009867495.1 (ATP synthase CF0 subunit III [Cratoneuron filicinum] >QKG04740.1 ATP synthase CF0 subunit III [Cratoneuron filicinum])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. NCBI nr
Match: QTT78499.1 (ATP synthase CF0 C subunit [Andreaea rupestris var. fauriei])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy Swiss-Prot
Match: Q6WQW2 (ATP synthase subunit c, chloroplastic OS=Cucumis sativus OX=3659 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy Swiss-Prot
Match: P62481 (ATP synthase subunit c, chloroplastic OS=Marchantia polymorpha OX=3197 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy Swiss-Prot
Match: B0Z4N0 (ATP synthase subunit c, chloroplastic OS=Oenothera argillicola OX=3940 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy Swiss-Prot
Match: B0Z4W4 (ATP synthase subunit c, chloroplastic OS=Oenothera biennis OX=3942 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy Swiss-Prot
Match: P62480 (ATP synthase subunit c, chloroplastic OS=Oenothera elata subsp. hookeri OX=85636 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy TrEMBL
Match: A0A0U2UJ76 (ATP synthase subunit c, chloroplastic OS=Oenothera oakesiana OX=482602 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy TrEMBL
Match: U6A3L6 (ATP synthase F0 sector subunit C OS=Monocostus uniflorus OX=4634 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy TrEMBL
Match: A0A218KG23 (ATP synthase subunit c, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy TrEMBL
Match: A0A0U2SNX2 (ATP synthase subunit c, chloroplastic OS=Oenothera grandiflora OX=49455 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. ExPASy TrEMBL
Match: A0A482CGV6 (ATP synthase F0 sector subunit C OS=Solanum violaceimarmoratum OX=315348 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]
BLAST of Cmc00g0001461 vs. TAIR 10
Match: ATCG00140.1 (ATP synthase subunit C family protein )

HSP 1 Score: 93.2 bits (230), Expect = 6.6e-20
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPL+SAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGT 52

The following BLAST results are available for this feature:
BLAST of Cmc00g0001461 vs. NCBI nr
Match NameE-valueIdentityDescription
ARV78259.14.2e-16100.00ATP synthase CF0 C subunit [Aneura pinguis] >ASN73860.1 ATP synthase CF0 C subun... [more]
YP_009682225.14.2e-16100.00ATP synthase CF0 subunit III [Fissidens nobilis] >YP_009867577.1 ATP synthase CF... [more]
YP_009988672.14.2e-16100.00ATP synthase III subunit [Myuroclada maximowiczii] >QNM39984.1 ATP synthase III ... [more]
YP_009867495.14.2e-16100.00ATP synthase CF0 subunit III [Cratoneuron filicinum] >QKG04740.1 ATP synthase CF... [more]
QTT78499.14.2e-16100.00ATP synthase CF0 C subunit [Andreaea rupestris var. fauriei][more]
BLAST of Cmc00g0001461 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6WQW25.4e-19100.00ATP synthase subunit c, chloroplastic OS=Cucumis sativus OX=3659 GN=atpH PE=3 SV... [more]
P624815.4e-19100.00ATP synthase subunit c, chloroplastic OS=Marchantia polymorpha OX=3197 GN=atpH P... [more]
B0Z4N05.4e-19100.00ATP synthase subunit c, chloroplastic OS=Oenothera argillicola OX=3940 GN=atpH P... [more]
B0Z4W45.4e-19100.00ATP synthase subunit c, chloroplastic OS=Oenothera biennis OX=3942 GN=atpH PE=3 ... [more]
P624805.4e-19100.00ATP synthase subunit c, chloroplastic OS=Oenothera elata subsp. hookeri OX=85636... [more]
BLAST of Cmc00g0001461 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0U2UJ762.0e-16100.00ATP synthase subunit c, chloroplastic OS=Oenothera oakesiana OX=482602 GN=atpH P... [more]
U6A3L62.0e-16100.00ATP synthase F0 sector subunit C OS=Monocostus uniflorus OX=4634 GN=atpH PE=3 SV... [more]
A0A218KG232.0e-16100.00ATP synthase subunit c, chloroplastic OS=Cucumis sativus var. hardwickii OX=3192... [more]
A0A0U2SNX22.0e-16100.00ATP synthase subunit c, chloroplastic OS=Oenothera grandiflora OX=49455 GN=atpH ... [more]
A0A482CGV62.0e-16100.00ATP synthase F0 sector subunit C OS=Solanum violaceimarmoratum OX=315348 GN=atpH... [more]
BLAST of Cmc00g0001461 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00140.16.6e-2096.15ATP synthase subunit C family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000454ATP synthase, F0 complex, subunit CPRINTSPR00124ATPASECcoord: 33..48
score: 43.63
coord: 12..31
score: 42.45
IPR000454ATP synthase, F0 complex, subunit CPANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 1..49
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 11..45
e-value: 2.3E-10
score: 40.7
IPR038662F1F0 ATP synthase subunit C superfamilyGENE3D1.20.20.10F1F0 ATP synthase subunit Ccoord: 1..52
e-value: 5.6E-21
score: 76.3
NoneNo IPR availablePANTHERPTHR10031:SF41ATPASE, F0 COMPLEX, SUBUNIT C, V-ATPASE PROTEOLIPID SUBUNIT C-LIKE DOMAIN PROTEIN-RELATEDcoord: 1..49
IPR035921F/V-ATP synthase subunit C superfamilySUPERFAMILY81333F1F0 ATP synthase subunit Ccoord: 3..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc00g0001461.1Cmc00g0001461.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function GO:0008289 lipid binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0015078 proton transmembrane transporter activity