Cmc00g0001401 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc00g0001401
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Location	CMiso1.1chr00: 1460005 .. 1460199 (-)
RNA-Seq Expression	Cmc00g0001401
Synteny	Cmc00g0001401

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGAGATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCTATACAGTAGGGTAGACTGA

mRNA sequence

ATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGAGATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCTATACAGTAGGGTAGACTGA

Coding sequence (CDS)

ATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGAGATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCTATACAGTAGGGTAGACTGA

Protein sequence

MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLYSRVD

Homology

[Close]

BLAST of Cmc00g0001401 vs. NCBI nr
Match: KAA0042455.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 9.6e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60
          MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 SRVD 65
          SRVD
Sbjct: 61 SRVD 64

[Close]

BLAST of Cmc00g0001401 vs. NCBI nr
Match: KAA0066844.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27992.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 6.9e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60
          MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Cmc00g0001401 vs. NCBI nr
Match: RWR83731.1 (putative mitochondrial protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28
Identity = 61/64 (95.31%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITD ISPWPFASESVLPSQCPGIHPMHSF Y
Sbjct: 45  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRY 104

Query: 61  SRVD 65
           S VD
Sbjct: 105 STVD 108

[Close]

BLAST of Cmc00g0001401 vs. NCBI nr
Match: DAD25653.1 (TPA_asm: hypothetical protein HUJ06_027117 [Nelumbo nucifera])

HSP 1 Score: 132.9 bits (333), Expect = 9.9e-28
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITD ISPWPFASESVLPSQCPGIHPMHSF Y
Sbjct: 45  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRY 104

Query: 61  SRV 64
           S V
Sbjct: 105 STV 107

[Close]

BLAST of Cmc00g0001401 vs. NCBI nr
Match: KAD4384359.1 (hypothetical protein E3N88_24527 [Mikania micrantha])

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSF 59
           MFQFAKFEKSKERRLATELGYGFPIGDPWITD ISPWPFASESVLPSQCPGIHPMHSF
Sbjct: 161 MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 218

[Close]

BLAST of Cmc00g0001401 vs. ExPASy Swiss-Prot
Match: P93276 (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-28
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSF 59
          MFQFAKF KSKERRLATELGYGFPIGDPWITD ISPWPFASESVLPSQCPGIHPMHSF
Sbjct: 1  MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 58

[Close]

BLAST of Cmc00g0001401 vs. ExPASy TrEMBL
Match: A0A5A7TLZ4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45606G00030 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.6e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60
          MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 SRVD 65
          SRVD
Sbjct: 61 SRVD 64

[Close]

BLAST of Cmc00g0001401 vs. ExPASy TrEMBL
Match: A0A5D3DWU4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002030 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.3e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60
          MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Cmc00g0001401 vs. ExPASy TrEMBL
Match: A0A443NZ14 (Putative mitochondrial protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01249300 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-29
Identity = 61/64 (95.31%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60
           MFQFAKFEKSKERRLATELGYGFPIGDPWITD ISPWPFASESVLPSQCPGIHPMHSF Y
Sbjct: 45  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRY 104

Query: 61  SRVD 65
           S VD
Sbjct: 105 STVD 108

[Close]

BLAST of Cmc00g0001401 vs. ExPASy TrEMBL
Match: Q5M9R1 (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSF 59
           MFQFAKFEKSKERRLATELGYGFPIGDPWITD ISPWPFASESVLPSQCPGIHPMHSF
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 104

[Close]

BLAST of Cmc00g0001401 vs. ExPASy TrEMBL
Match: A0A1J6INJ4 (Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSF 59
           MFQFAKFEKSKERRLATELGYGFPIGDPWITD ISPWPFASESVLPSQCPGIHPMHSF
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 104

[Close]

BLAST of Cmc00g0001401 vs. TAIR 10
Match: ATMG00030.1 (hypothetical protein )

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-29
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSF 59
          MFQFAKF KSKERRLATELGYGFPIGDPWITD ISPWPFASESVLPSQCPGIHPMHSF
Sbjct: 1  MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 58

The following BLAST results are available for this feature:

BLAST of Cmc00g0001401 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042455.1	9.6e-31	100.00	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0066844.1	6.9e-29	100.00	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27992.1 putative m...	[more]
RWR83731.1	1.5e-28	95.31	putative mitochondrial protein [Cinnamomum micranthum f. kanehirae]	[more]
DAD25653.1	9.9e-28	95.24	TPA_asm: hypothetical protein HUJ06_027117 [Nelumbo nucifera]	[more]
KAD4384359.1	3.2e-26	98.28	hypothetical protein E3N88_24527 [Mikania micrantha]	[more]

BLAST of Cmc00g0001401 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93276	1.6e-28	96.55	Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc00g0001401 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLZ4	4.6e-31	100.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DWU4	3.3e-29	100.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A443NZ14	7.4e-29	95.31	Putative mitochondrial protein OS=Cinnamomum micranthum f. kanehirae OX=337451 G...	[more]
Q5M9R1	1.5e-26	98.28	Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1	[more]
A0A1J6INJ4	1.5e-26	98.28	Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE...	[more]

BLAST of Cmc00g0001401 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00030.1	1.1e-29	96.55	hypothetical protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044987	Uncharacterized mitochondrial protein AtMg00030-like	PANTHER	PTHR37773	FAMILY NOT NAMED	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc00g0001401.1	Cmc00g0001401.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003676	nucleic acid binding