CmaCh20G011380 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G011380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionB3 domain-containing transcription factor VRN1-like
LocationCma_Chr20: 9000435 .. 9001327 (+)
RNA-Seq ExpressionCmaCh20G011380
SyntenyCmaCh20G011380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCTTTCGAGTCCGCCACGCCCCATTTCTTCAAGGTCATTCTTCCACAGACCCTCATTCAATCAAAGCTCGTAAGTTCTTCATCTCTTCCACCATTGTTCCTTTTGATAATCCGTATTATCAAATGGGGTTTTAAAATTTTGTGTTTTTTTCAGGCTATTCCGCACAAATTCGTTAGAAAACATGGGGAGGCCTTGGAAACTGAAGAGGTGCGTCTTAAGGTAGCGAGTGGGGCAGAATGGAAAGTGGGTTTGACAAAAAACGATGAAAAAATATGGTTTGAAAAAGGATGGGAAGAGTTTGTGAAATTTTACAGCGTTGAAATTGGTCATTTTTTGACGTTTAGATATGAAGGAAACTCATGCTTCCATGTTGTTATATTCGATAAAACTGCTTCGGAGATTGAGTATCCATTAGGTTGTGGAGGGAAAGTTAAAAAAAGGGAGAGGTTTTCAATTACTGAAGAAGCCACAAAGTTCCAATCTTTAACGATGAATCCTTCATTTATGGTAACAATGGGAGCTTCGTATCTTCATACAGGCAAGAGCTATCTGGTAATGATCTTCTTATTTGTTGTTTGTTGTTATGAGATTGTTGGTTTGATTGAATTTGGGTGTTGTTGTAGAGTATTCCACTATGGTTTGCAAATGCCCACATGGAGAGTCCGAAGGAGATGAATGTTGAAGTTTCGGATGGAAGGGTTTGGAAGATCTTGTGCGGTGAAAGGTGGCCTCTTGGTGTGAAGAGGGTGGAAATGAGAGGGGGTTGGAGGGATTTTGCGAGAGATAATGGGTTGAAAAAGGGTGATATTTGTGTGTTTGAGTTGATGGAAACCAGTGAGCTATCGTTTAAAGCTACCATTTTTCGATCGGGGTGTCGAGGTTGA

mRNA sequence

ATGGCTTCCTCTTTCGAGTCCGCCACGCCCCATTTCTTCAAGGTCATTCTTCCACAGACCCTCATTCAATCAAAGCTCGCTATTCCGCACAAATTCGTTAGAAAACATGGGGAGGCCTTGGAAACTGAAGAGGTGCGTCTTAAGGTAGCGAGTGGGGCAGAATGGAAAGTGGGTTTGACAAAAAACGATGAAAAAATATGGTTTGAAAAAGGATGGGAAGAGTTTGTGAAATTTTACAGCGTTGAAATTGGTCATTTTTTGACGTTTAGATATGAAGGAAACTCATGCTTCCATGTTGTTATATTCGATAAAACTGCTTCGGAGATTGAGTATCCATTAGGTTGTGGAGGGAAAGTTAAAAAAAGGGAGAGGTTTTCAATTACTGAAGAAGCCACAAAGTTCCAATCTTTAACGATGAATCCTTCATTTATGGTAACAATGGGAGCTTCGTATCTTCATACAGGCAAGAGCTATCTGAGTATTCCACTATGGTTTGCAAATGCCCACATGGAGAGTCCGAAGGAGATGAATGTTGAAGTTTCGGATGGAAGGGTTTGGAAGATCTTGTGCGGTGAAAGGTGGCCTCTTGGTGTGAAGAGGGTGGAAATGAGAGGGGGTTGGAGGGATTTTGCGAGAGATAATGGGTTGAAAAAGGGTGATATTTGTGTGTTTGAGTTGATGGAAACCAGTGAGCTATCGTTTAAAGCTACCATTTTTCGATCGGGGTGTCGAGGTTGA

Coding sequence (CDS)

ATGGCTTCCTCTTTCGAGTCCGCCACGCCCCATTTCTTCAAGGTCATTCTTCCACAGACCCTCATTCAATCAAAGCTCGCTATTCCGCACAAATTCGTTAGAAAACATGGGGAGGCCTTGGAAACTGAAGAGGTGCGTCTTAAGGTAGCGAGTGGGGCAGAATGGAAAGTGGGTTTGACAAAAAACGATGAAAAAATATGGTTTGAAAAAGGATGGGAAGAGTTTGTGAAATTTTACAGCGTTGAAATTGGTCATTTTTTGACGTTTAGATATGAAGGAAACTCATGCTTCCATGTTGTTATATTCGATAAAACTGCTTCGGAGATTGAGTATCCATTAGGTTGTGGAGGGAAAGTTAAAAAAAGGGAGAGGTTTTCAATTACTGAAGAAGCCACAAAGTTCCAATCTTTAACGATGAATCCTTCATTTATGGTAACAATGGGAGCTTCGTATCTTCATACAGGCAAGAGCTATCTGAGTATTCCACTATGGTTTGCAAATGCCCACATGGAGAGTCCGAAGGAGATGAATGTTGAAGTTTCGGATGGAAGGGTTTGGAAGATCTTGTGCGGTGAAAGGTGGCCTCTTGGTGTGAAGAGGGTGGAAATGAGAGGGGGTTGGAGGGATTTTGCGAGAGATAATGGGTTGAAAAAGGGTGATATTTGTGTGTTTGAGTTGATGGAAACCAGTGAGCTATCGTTTAAAGCTACCATTTTTCGATCGGGGTGTCGAGGTTGA

Protein sequence

MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVKKRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEVSDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFRSGCRG
Homology
[Close]
BLAST of CmaCh20G011380 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.4e-21
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 10  PHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFE 69
           P F K+I   T+ + +L +P KFV K  + L    V L V  G  W+VGL K D KIWF+
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSV-AVALTVPDGHVWRVGLRKADNKIWFQ 63

Query: 70  KGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEY 112
            GW+EFV  YS+ IG+ L FRYEGNS F V IF+ + SEI Y
Sbjct: 64  DGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104


HSP 2 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 33/105 (31.43%), Postives = 50/105 (47.62%), Query Frame = 0 

Query: 140 NPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEVSDGRVWKILCGERWPL--- 199
           NP F V +  SYL+ G   + +P  FA  ++            G +   L  ++WP+   
Sbjct: 241 NPFFRVVLRPSYLYRG-CIMYLPSGFAEKYLSG--------ISGFIKVQLAEKQWPVRCL 300

Query: 200 -GVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 241
               R +   GW +F  +N L +GD+CVFEL+ T +   K T FR
Sbjct: 301 YKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFR 336

[Close]
BLAST of CmaCh20G011380 vs. ExPASy Swiss-Prot
Match: Q9XIB4 (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           E     F K+IL   +I+  + +P +FVR  G  L T+ V L+   G +  + + +  ++
Sbjct: 28  EPTVKKFIKIILLSRIIEKMMKVPARFVR-FGPKL-TDNVTLQTPVGFKRSIRIKRIGDE 87

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           +WFEKGW EF + +S+  GHFL F YEG+SCF VVIFD +ASEIEYPL
Sbjct: 88  VWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPL 133

[Close]
BLAST of CmaCh20G011380 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-18
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           ES    FFK++LP T+    + IP +FV+  G  L +E V L+  +G +  + L +  E+
Sbjct: 24  ESPVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKL-SEVVTLETPAGFKRSIKLKRIGEE 83

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           IWF +GW EF + +S+E GHFL F Y+ NS F V+IF+ +A E +YPL
Sbjct: 84  IWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPL 130

[Close]
BLAST of CmaCh20G011380 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-18
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           ES    FFK++LP T+    + IP +FV+  G  L +E V L   +G +  + L +  E+
Sbjct: 24  ESPVKKFFKLVLPSTMKDKMMRIPPRFVKLQGSKL-SEVVTLVTPAGYKRSIKLKRIGEE 83

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           IWF +GW EF + +S+E GHFL F Y+ NS F V+IF+ +A E  YPL
Sbjct: 84  IWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPL 130

[Close]
BLAST of CmaCh20G011380 vs. ExPASy Swiss-Prot
Match: O81778 (B3 domain-containing protein REM9 OS=Arabidopsis thaliana OX=3702 GN=REM9 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.0e-14
Identity = 63/243 (25.93%), Postives = 110/243 (45.27%), Query Frame = 0 

Query: 2   ASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEAL-ETEEVRLKV-ASGAEWKVGL 61
           AS       HFF+ +LP    QS L IP  +  +H E   E + V L+  AS   W+V +
Sbjct: 4   ASPLSPTNQHFFQPLLPG--FQSNLKIPVNYFSEHIEGKHEGKTVTLRTDASERTWEVKM 63

Query: 62  TKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGC---- 121
               E     +GW+EFV+ + + IG F+ FR+EG+  FHV     +  EI+YP       
Sbjct: 64  ----EGHRLTEGWKEFVEAHDLRIGDFVVFRHEGDMVFHVTALGPSCCEIQYPQSSRHEE 123

Query: 122 -----GGKVKKRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFA--NA 181
                  ++ ++E     ++ +   S  +N     +   ++ +  +  +S+P  F   + 
Sbjct: 124 GEESGENEISEKEGEENVQKESDKSSSDLN---CFSQSVTHSNISRDAVSVPRDFVKRSG 183

Query: 182 HMESPKEMNVEVSDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELME 232
             +   E+ +   +G+ W+    E        V + GGW  F  +N L  GD C F+L++
Sbjct: 184 FSKGRHEIVLMNEEGKSWE---SEVKSYMSGAVYLVGGWTTFCTENKLDVGDSCTFKLLQ 234

[Close]
BLAST of CmaCh20G011380 vs. ExPASy TrEMBL
Match: A0A6J1I6H9 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita maxima OX=3661 GN=LOC111470377 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 1.9e-141
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180
           KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV
Sbjct: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180

Query: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmaCh20G011380 vs. ExPASy TrEMBL
Match: A0A6J1EJA7 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111434979 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.2e-137
Identity = 239/245 (97.55%), Postives = 241/245 (98.37%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTL QSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180
           KRERFSI+EEATKFQSLT NPSFMVTMGASYLHTGKSYLSIP WFANAHMESPKEM+VEV
Sbjct: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180

Query: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWP GVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmaCh20G011380 vs. ExPASy TrEMBL
Match: A0A6J1E0D8 (B3 domain-containing protein At4g01580-like OS=Momordica charantia OX=3673 GN=LOC111024773 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 3.2e-72
Identity = 150/301 (49.83%), Postives = 187/301 (62.13%), Query Frame = 0 

Query: 5   FESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDE 64
           F SATPHFFKVILP  L Q KL +P KFV +HGEAL+ EEV LKVA+GAEWKVG+ K++ 
Sbjct: 13  FTSATPHFFKVILPHILTQRKLNVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNG 72

Query: 65  KIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK---- 124
           K+WFEKGW++FV+FYS+ +G+FLTFRYE N+CFHV IFD +ASEIEYP+   G ++    
Sbjct: 73  KVWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESE 132

Query: 125 ---------KRER----------------------------------------------- 184
                    KR R                                               
Sbjct: 133 EFEDQILVYKRRREGKITQTNLYSVAHHKKMKISNDHDEVLRNEDFQSSKFKDRLKVIKC 192

Query: 185 ----FSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 241
                S+TE A+ FQS+T N SFM+TMG SY+HTGK   +IP  FA  H++  +E+++E 
Sbjct: 193 ENGLRSVTERASTFQSMTPNHSFMITMGPSYIHTGKGDPNIPKSFAKIHVKKSQEISLED 252

[Close]
BLAST of CmaCh20G011380 vs. ExPASy TrEMBL
Match: A0A1S4E1R2 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=LOC107991566 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-50
Identity = 120/280 (42.86%), Postives = 152/280 (54.29%), Query Frame = 0 

Query: 49  VASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASE 108
           + SGA+WKVGL K++EK+WFEKGWEEFVKF+S++ GHFLTFRYEGNSCF VVIFD+TA+E
Sbjct: 1   MVSGAKWKVGLKKSNEKVWFEKGWEEFVKFHSIDYGHFLTFRYEGNSCFQVVIFDQTATE 60

Query: 109 IEYPLG-----------------------------------C------------------ 168
           IEYP+                                    C                  
Sbjct: 61  IEYPISFKNQFDNKKMFEEKRKSVQETLPIKRARKEVHEDECVPQTLYKKMKTSDEVGAN 120

Query: 169 ---------------------------GGKVKKRERFSITEEATKFQSLTMNPSFMVTMG 228
                                       GK+  +   +I  +A+KF+ +T NPSFMVTMG
Sbjct: 121 KVIWRSHELQEVEMKKNTEDLKSSDLKKGKIWSKRSSTIFAKASKFKEITTNPSFMVTMG 180

Query: 229 ASYLHTGKSYLSIPLWFANAHMESPKEMNVEVS--DGRVWKILCGERW--PLGVKRVEMR 243
            SYLHT  S L+IP  FA+ +++  K++ + VS  D +VWKILC ERW      +R EM 
Sbjct: 181 RSYLHT--SNLNIPTGFASTYLKETKDLILYVSSDDQKVWKILCVERWLYARSCQRFEMA 240

[Close]
BLAST of CmaCh20G011380 vs. ExPASy TrEMBL
Match: A0A6J1I7N8 (B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470376 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 6.5e-49
Identity = 115/275 (41.82%), Postives = 159/275 (57.82%), Query Frame = 0 

Query: 10  PHFFKVILPQTLIQSKLAIPHKFVRKHG-EALETEEVRLKVASGAEWKVGLTKNDEKIWF 69
           PHFFK++L   L + KL IP KFV ++G +A E    RLKVA G EW+VG+TK+D ++WF
Sbjct: 25  PHFFKIVLAHALKEQKLEIPKKFVGEYGLKAFENNPTRLKVADGEEWEVGVTKSDGRVWF 84

Query: 70  EKGWEEFVKFYSVEIGHFLTFRYE-GNSCFHVVIFDKTASEIEYPLG------------- 129
           + GW++FV+FY+V + +FL F+YE  +SCFHVVIFD TA+EI+YPL              
Sbjct: 85  DYGWQKFVEFYNVGLEYFLVFKYELRSSCFHVVIFDPTATEIKYPLKKKLKMGTNFDDLH 144

Query: 130 -------------------CGGKVKKR------ERFSITEEATKFQSLTMNPSFMVTMGA 189
                                 K K R      ER     +AT FQS+T NPSFM  +  
Sbjct: 145 LISHPHPQVGKASFGAMELMNNKRKLRLMTRTSERAGAMAKATTFQSMTPNPSFMCKIYP 204

Query: 190 SYLHTGKSYLSIPLWFANAHMESPKEMNVEVSDGRVWKI-LCGERWPLGVKRVEMRGGWR 242
           S++ +G +YL++P  FA  H+E P EM ++  DGR W +       P   +RVE+R GWR
Sbjct: 205 SHIQSG-AYLNVPRRFAERHIEEPTEMTLQDLDGRTWGVTYYSYLTPKMKRRVELRSGWR 264

[Close]
BLAST of CmaCh20G011380 vs. NCBI nr
Match: XP_022971710.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita maxima])

HSP 1 Score: 511.5 bits (1316), Expect = 3.9e-141
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180
           KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV
Sbjct: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180

Query: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmaCh20G011380 vs. NCBI nr
Match: XP_023513190.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.1 bits (1289), Expect = 5.3e-138
Identity = 240/245 (97.96%), Postives = 242/245 (98.78%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTL QSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLTQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180
           KRERFSI+EEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIP WFANAHMESPKEM+VEV
Sbjct: 121 KRERFSISEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180

Query: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWP GVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmaCh20G011380 vs. NCBI nr
Match: XP_022928091.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita moschata])

HSP 1 Score: 498.0 bits (1281), Expect = 4.5e-137
Identity = 239/245 (97.55%), Postives = 241/245 (98.37%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTL QSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180
           KRERFSI+EEATKFQSLT NPSFMVTMGASYLHTGKSYLSIP WFANAHMESPKEM+VEV
Sbjct: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHMESPKEMSVEV 180

Query: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWP GVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SGCRG
Sbjct: 241 SGCRG 245

[Close]
BLAST of CmaCh20G011380 vs. NCBI nr
Match: KAG6571413.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 492.7 bits (1267), Expect = 1.9e-135
Identity = 237/245 (96.73%), Postives = 240/245 (97.96%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60
           MASSFESATPHFFKVILPQTL QSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT
Sbjct: 1   MASSFESATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLT 60

Query: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120
           KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK
Sbjct: 61  KNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGCGGKVK 120

Query: 121 KRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEV 180
           KRERFSI+EEATKFQSLT NPSFMVTMGASYLHTGKSYLSIP WFANAH+ESPKEM+VEV
Sbjct: 121 KRERFSISEEATKFQSLTTNPSFMVTMGASYLHTGKSYLSIPQWFANAHIESPKEMSVEV 180

Query: 181 SDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240
           SDGRVWKILCGERWP GVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR
Sbjct: 181 SDGRVWKILCGERWPHGVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 240

Query: 241 SGCRG 246
           SG RG
Sbjct: 241 SGSRG 245

[Close]
BLAST of CmaCh20G011380 vs. NCBI nr
Match: KAG7011178.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 477.6 bits (1228), Expect = 6.3e-131
Identity = 237/273 (86.81%), Postives = 240/273 (87.91%), Query Frame = 0 

Query: 1   MASSFESATPHFFKVILPQTLIQSKL----------------------------AIPHKF 60
           MASSFESATPHFFKVILPQTL QSKL                            AIPHKF
Sbjct: 1   MASSFESATPHFFKVILPQTLNQSKLVSSSSLPPLFLFIIRIIKWGFKNLCFFQAIPHKF 60

Query: 61  VRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYE 120
           VRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYE
Sbjct: 61  VRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYE 120

Query: 121 GNSCFHVVIFDKTASEIEYPLGCGGKVKKRERFSITEEATKFQSLTMNPSFMVTMGASYL 180
           GNSCFHVVIFDKTASEIEYPLGCGGKVKKRERFSI+EEATKFQSLT NPSFMVTMGASYL
Sbjct: 121 GNSCFHVVIFDKTASEIEYPLGCGGKVKKRERFSISEEATKFQSLTTNPSFMVTMGASYL 180

Query: 181 HTGKSYLSIPLWFANAHMESPKEMNVEVSDGRVWKILCGERWPLGVKRVEMRGGWRDFAR 240
           HTGKSYLSIP WFANAH+ESPKEM+VEVSDGRVWKILCGERWP GVKRVEMRGGWRDFAR
Sbjct: 181 HTGKSYLSIPQWFANAHIESPKEMSVEVSDGRVWKILCGERWPHGVKRVEMRGGWRDFAR 240

Query: 241 DNGLKKGDICVFELMETSELSFKATIFRSGCRG 246
           DNGLKKGDICVFELMETSELSFKATIFRSG RG
Sbjct: 241 DNGLKKGDICVFELMETSELSFKATIFRSGSRG 273

[Close]
BLAST of CmaCh20G011380 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 102.1 bits (253), Expect = 6.7e-22
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 10  PHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKIWFE 69
           P F K+I   T+ + +L +P KFV K  + L    V L V  G  W+VGL K D KIWF+
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSV-AVALTVPDGHVWRVGLRKADNKIWFQ 63

Query: 70  KGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEY 112
            GW+EFV  YS+ IG+ L FRYEGNS F V IF+ + SEI Y
Sbjct: 64  DGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104


HSP 2 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 33/105 (31.43%), Postives = 50/105 (47.62%), Query Frame = 0 

Query: 140 NPSFMVTMGASYLHTGKSYLSIPLWFANAHMESPKEMNVEVSDGRVWKILCGERWPL--- 199
           NP F V +  SYL+ G   + +P  FA  ++            G +   L  ++WP+   
Sbjct: 241 NPFFRVVLRPSYLYRG-CIMYLPSGFAEKYLSG--------ISGFIKVQLAEKQWPVRCL 300

Query: 200 -GVKRVEMRGGWRDFARDNGLKKGDICVFELMETSELSFKATIFR 241
               R +   GW +F  +N L +GD+CVFEL+ T +   K T FR
Sbjct: 301 YKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFR 336

[Close]
BLAST of CmaCh20G011380 vs. TAIR 10
Match: AT1G49475.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-20
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           E     F K+IL   +I+  + +P +FVR  G  L T+ V L+   G +  + + +  ++
Sbjct: 28  EPTVKKFIKIILLSRIIEKMMKVPARFVR-FGPKL-TDNVTLQTPVGFKRSIRIKRIGDE 87

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           +WFEKGW EF + +S+  GHFL F YEG+SCF VVIFD +ASEIEYPL
Sbjct: 88  VWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPL 133

[Close]
BLAST of CmaCh20G011380 vs. TAIR 10
Match: AT3G18960.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-19
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           ES    FFK++LP T+    + IP +FV+  G  L +E V L+  +G +  + L +  E+
Sbjct: 24  ESPVKKFFKLVLPSTMKDKMMKIPPRFVKLQGSKL-SEVVTLETPAGFKRSIKLKRIGEE 83

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           IWF +GW EF + +S+E GHFL F Y+ NS F V+IF+ +A E +YPL
Sbjct: 84  IWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPL 130

[Close]
BLAST of CmaCh20G011380 vs. TAIR 10
Match: AT4G01580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 6   ESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEK 65
           ES    FFK++LP T+    + IP +FV+  G  L +E V L   +G +  + L +  E+
Sbjct: 24  ESPVKKFFKLVLPSTMKDKMMRIPPRFVKLQGSKL-SEVVTLVTPAGYKRSIKLKRIGEE 83

Query: 66  IWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPL 114
           IWF +GW EF + +S+E GHFL F Y+ NS F V+IF+ +A E  YPL
Sbjct: 84  IWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPL 130

[Close]
BLAST of CmaCh20G011380 vs. TAIR 10
Match: AT4G31690.1 (Transcriptional factor B3 family protein )

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-15
Identity = 63/243 (25.93%), Postives = 110/243 (45.27%), Query Frame = 0 

Query: 2   ASSFESATPHFFKVILPQTLIQSKLAIPHKFVRKHGEAL-ETEEVRLKV-ASGAEWKVGL 61
           AS       HFF+ +LP    QS L IP  +  +H E   E + V L+  AS   W+V +
Sbjct: 4   ASPLSPTNQHFFQPLLPG--FQSNLKIPVNYFSEHIEGKHEGKTVTLRTDASERTWEVKM 63

Query: 62  TKNDEKIWFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYPLGC---- 121
               E     +GW+EFV+ + + IG F+ FR+EG+  FHV     +  EI+YP       
Sbjct: 64  ----EGHRLTEGWKEFVEAHDLRIGDFVVFRHEGDMVFHVTALGPSCCEIQYPQSSRHEE 123

Query: 122 -----GGKVKKRERFSITEEATKFQSLTMNPSFMVTMGASYLHTGKSYLSIPLWFA--NA 181
                  ++ ++E     ++ +   S  +N     +   ++ +  +  +S+P  F   + 
Sbjct: 124 GEESGENEISEKEGEENVQKESDKSSSDLN---CFSQSVTHSNISRDAVSVPRDFVKRSG 183

Query: 182 HMESPKEMNVEVSDGRVWKILCGERWPLGVKRVEMRGGWRDFARDNGLKKGDICVFELME 232
             +   E+ +   +G+ W+    E        V + GGW  F  +N L  GD C F+L++
Sbjct: 184 FSKGRHEIVLMNEEGKSWE---SEVKSYMSGAVYLVGGWTTFCTENKLDVGDSCTFKLLQ 234

The following BLAST results are available for this feature:
BLAST of CmaCh20G011380 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L3W19.4e-2150.00B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G... [more]
Q9XIB41.8e-1945.37B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49... [more]
Q84R271.5e-1842.59B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18... [more]
Q9ZSH73.4e-1842.59B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01... [more]
O817785.0e-1425.93B3 domain-containing protein REM9 OS=Arabidopsis thaliana OX=3702 GN=REM9 PE=2 S... [more]
BLAST of CmaCh20G011380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I6H91.9e-141100.00B3 domain-containing transcription factor VRN1-like OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1EJA72.2e-13797.55B3 domain-containing transcription factor VRN1-like OS=Cucurbita moschata OX=366... [more]
A0A6J1E0D83.2e-7249.83B3 domain-containing protein At4g01580-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A1S4E1R25.9e-5042.86B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=L... [more]
A0A6J1I7N86.5e-4941.82B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN... [more]
BLAST of CmaCh20G011380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022971710.13.9e-141100.00B3 domain-containing transcription factor VRN1-like [Cucurbita maxima][more]
XP_023513190.15.3e-13897.96B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo][more]
XP_022928091.14.5e-13797.55B3 domain-containing transcription factor VRN1-like [Cucurbita moschata][more]
KAG6571413.11.9e-13596.73B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma ... [more]
KAG7011178.16.3e-13186.81B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma ... [more]
BLAST of CmaCh20G011380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G18990.16.7e-2250.00AP2/B3-like transcriptional factor family protein [more]
AT1G49475.11.3e-2045.37AP2/B3-like transcriptional factor family protein [more]
AT3G18960.11.1e-1942.59AP2/B3-like transcriptional factor family protein [more]
AT4G01580.12.4e-1942.59AP2/B3-like transcriptional factor family protein [more]
AT4G31690.13.6e-1525.93Transcriptional factor B3 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 143..242
e-value: 3.8E-10
score: 49.7
coord: 12..105
e-value: 1.8E-21
score: 87.3
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 12..104
e-value: 1.0E-18
score: 67.0
coord: 156..241
e-value: 1.1E-15
score: 57.3
IPR003340B3 DNA binding domainPROSITEPS50863B3coord: 144..242
score: 12.928905
IPR003340B3 DNA binding domainPROSITEPS50863B3coord: 11..105
score: 13.774995
IPR003340B3 DNA binding domainCDDcd10017B3_DNAcoord: 10..103
e-value: 1.94775E-22
score: 86.2276
IPR003340B3 DNA binding domainCDDcd10017B3_DNAcoord: 141..240
e-value: 2.54578E-18
score: 75.4421
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3D2.40.330.10coord: 3..106
e-value: 7.2E-29
score: 101.7
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3D2.40.330.10coord: 119..242
e-value: 4.0E-26
score: 93.1
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILY101936DNA-binding pseudobarrel domaincoord: 5..105
IPR015300DNA-binding pseudobarrel domain superfamilySUPERFAMILY101936DNA-binding pseudobarrel domaincoord: 140..241
NoneNo IPR availablePANTHERPTHR31920B3 DOMAIN-CONTAININGcoord: 3..113
coord: 122..240
NoneNo IPR availablePANTHERPTHR31920:SF26TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATEDcoord: 3..113
NoneNo IPR availablePANTHERPTHR31920:SF26TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATEDcoord: 122..240

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G011380.1CmaCh20G011380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding