CmaCh20G005910 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAACAAAAAAAAGTTAGCTATCCGACGCCGTTTCTCAGCTCTCTCTTTCCCTCGATATTTTAGTCTCGTCTCTCAGACTCAAGCTTGAGGCTCAACATCGGCAGCTATCAGTCGCTTCCCTTGATTCCTCTCCTTTCTTCTCCTTGAACTGGTAATATTGGATTCTCCACTTTCTTGATTTATGCTTTCTTCCCGCCTTATCTTCTGTTCTTGTTTTTTCTGCTTTCTACTTTACTTGGGGCGGTTAATTTTCATTCTGTATTAGGAAAAATTGATTGTCTTTGTACTAGTTGGTTTATTGGAGTATTATTTAGTTTGAGCTCATTAAGATTGATGGGTTTCCATATCATTCTCAGGATATATCTTTAATTCCCCCCCTCCCCCCTCACTTTTCGTCTGTTTTTCAGACTTTCAGTGACGGACCTTTCATGATGTGGAGATTCCAGTTTCGTGATAATCATGTGTATTACTGTTCTTTAGAATGTGAAAATATTTAGTAAATCAAAATTTGTTATCTTTTAATGGGTAGCTGCAAACCTCATGCTTCGAATGTCCTGTCTGTTTTTTTTGGTTTATGAATGTTTTCGTTTGAATATTACGTTATTCCTGAACTAGGATTTAATTCAATGTTGGGAATGAGATATAATGAAAGTGATATGAAAATCGTAATGAATTGGAATTAGAAACCTGTTGGGTATGTGTTCACCTGGTTCACAAACATCAAAACCTCGGAATCGACTCCGAAACAGATTGCCTTACGATCAAAACTCTTGAGATAAAGAGCAAGTTCCTTGGCCGAAGAATTGAACACTCCACTAGATAGGATGATGAATCCTACTTGAATGTTCTTGTCGTGCAACTCGACGCATGAATTGCAAATTCATGAAGTTCTCTTGTTGGCTAAACTTGAAAGAAGCACAAAGGTTAAAACTGAATTCATCATTATCTGTTTTGTACAACCTAATCGTCAGGATTTAGATTGCCTCCCAAAACCCTGAATACATGCTATGTTATAGAACATAAAAAGTGACTAAAAATAACCCTACTTAATATGTCATAAAAGGATAAAATTACATCAAAGTTATTGGATGAAGTATGAATAATAATTTGATGTCCTTGGTGATTCATATCAGAAAGTTCTTAATCGAACCAAATTGAATTTGTAAAACTGGTTTTAAACTGTCAAAGAGTTTGGTTCAGTTAGCACATTTGGCAAGCTGATCATCATGGTTTTCAGTTTGTGGCTTTGTTGAACCATCCACGTCCCTGCATTAGTTCTATCACAATGCTATCAAGGTTACAGATCTCCTCCTTATCCATTCTGCATTGGAAGTTTTTTGCTTCTTAACATGCGCTTTCACCTTTTTTTAATGTTCCTTATAAGACTGAATGCTGTGTCTATGAAATATCTTATGTAAATTTCAAGCTCTAGATTGATGAAGATGATGTAGTTGAATGCTATATTGAAATGGTTTTGCTTCCAAGCATGCAGTTCTACCGTTTTAATTTTTTTAAACATTGTAGAAGACTTTATTGAAAGCTTCCGGTGGATATAAAGATGAATATATCTATTTGAGATGATGAATCATGGCGTGGATGTGGTTTCTACTTTAAGTTATCATCTATTTCTTTTCATGTTATTTTGTGCAAATAGAGCATTGGTAGAGCTTTCAATCTATTGAAGCTGATCTTTTGTTTAATTGAAAGTTTGTGAACTGCAGAAGTTTTCCCGCCCAACAAATTAGAAGATTTTGTTGAGGTGCTTAGATGAGATTGTTGATATGCTCGCAGAGAAATCTGTTTCTTGATCATTATTTTGTTTTGTAGATTTTTGGAGATCTTTGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATTCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGTGTCTCCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTTGCTTTTTATACTCATTCTCTACTGCGCACATGCACACACTACAGAACAACCTCATGGTGACTGAATGCCATGATCCCTTTTTCGTTGTTTTGCTTAATTTTATTATAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCAACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCCTCTTGA AAAAAAAACAAAAAAAAGTTAGCTATCCGACGCCGTTTCTCAGCTCTCTCTTTCCCTCGATATTTTAGTCTCGTCTCTCAGACTCAAGCTTGAGGCTCAACATCGGCAGCTATCAGTCGCTTCCCTTGATTCCTCTCCTTTCTTCTCCTTGAACTGATTTTTGGAGATCTTTGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATTCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGTGTCTCCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCAACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCCTCTTGA ATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATTCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGTGTCTCCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCAACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCCTCTTGA MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS Homology
BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 9.3e-05 Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0
BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 9.3e-05 Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0
BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04 Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04 Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0
BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: A1KB09 (50S ribosomal protein L30 OS=Azoarcus sp. (strain BH72) OX=418699 GN=rpmD PE=3 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A6J1JDZ2 (uncharacterized protein LOC111484152 OS=Cucurbita maxima OX=3661 GN=LOC111484152 PE=3 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 2.8e-52 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 8.3e-49 Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0
BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47 Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0
BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47 Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0
BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A6J1G641 (uncharacterized protein LOC111451121 OS=Cucurbita moschata OX=3662 GN=LOC111451121 PE=3 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47 Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 0
BLAST of CmaCh20G005910 vs. NCBI nr
Match: XP_022986405.1 (uncharacterized protein LOC111484152 [Cucurbita maxima]) HSP 1 Score: 214.2 bits (544), Expect = 5.7e-52 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
BLAST of CmaCh20G005910 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 206.8 bits (525), Expect = 9.1e-50 Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0
BLAST of CmaCh20G005910 vs. NCBI nr
Match: KAG7010749.1 (rpmD [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 204.1 bits (518), Expect = 5.9e-49 Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 0
BLAST of CmaCh20G005910 vs. NCBI nr
Match: XP_022944386.1 (uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothetical protein SDJN03_29819, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48 Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0
BLAST of CmaCh20G005910 vs. NCBI nr
Match: XP_008455933.1 (PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >KAA0062861.1 50S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09532.1 50S ribosomal protein L30 [Cucumis melo var. makuwa]) HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47 Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0
BLAST of CmaCh20G005910 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein ) HSP 1 Score: 137.5 bits (345), Expect = 6.3e-33 Identity = 70/109 (64.22%), Postives = 88/109 (80.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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