CmaCh20G005910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G005910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L30
Location	Cma_Chr20: 2789991 .. 2792279 (-)
RNA-Seq Expression	CmaCh20G005910
Synteny	CmaCh20G005910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAACAAAAAAAAGTTAGCTATCCGACGCCGTTTCTCAGCTCTCTCTTTCCCTCGATATTTTAGTCTCGTCTCTCAGACTCAAGCTTGAGGCTCAACATCGGCAGCTATCAGTCGCTTCCCTTGATTCCTCTCCTTTCTTCTCCTTGAACTGGTAATATTGGATTCTCCACTTTCTTGATTTATGCTTTCTTCCCGCCTTATCTTCTGTTCTTGTTTTTTCTGCTTTCTACTTTACTTGGGGCGGTTAATTTTCATTCTGTATTAGGAAAAATTGATTGTCTTTGTACTAGTTGGTTTATTGGAGTATTATTTAGTTTGAGCTCATTAAGATTGATGGGTTTCCATATCATTCTCAGGATATATCTTTAATTCCCCCCCTCCCCCCTCACTTTTCGTCTGTTTTTCAGACTTTCAGTGACGGACCTTTCATGATGTGGAGATTCCAGTTTCGTGATAATCATGTGTATTACTGTTCTTTAGAATGTGAAAATATTTAGTAAATCAAAATTTGTTATCTTTTAATGGGTAGCTGCAAACCTCATGCTTCGAATGTCCTGTCTGTTTTTTTTGGTTTATGAATGTTTTCGTTTGAATATTACGTTATTCCTGAACTAGGATTTAATTCAATGTTGGGAATGAGATATAATGAAAGTGATATGAAAATCGTAATGAATTGGAATTAGAAACCTGTTGGGTATGTGTTCACCTGGTTCACAAACATCAAAACCTCGGAATCGACTCCGAAACAGATTGCCTTACGATCAAAACTCTTGAGATAAAGAGCAAGTTCCTTGGCCGAAGAATTGAACACTCCACTAGATAGGATGATGAATCCTACTTGAATGTTCTTGTCGTGCAACTCGACGCATGAATTGCAAATTCATGAAGTTCTCTTGTTGGCTAAACTTGAAAGAAGCACAAAGGTTAAAACTGAATTCATCATTATCTGTTTTGTACAACCTAATCGTCAGGATTTAGATTGCCTCCCAAAACCCTGAATACATGCTATGTTATAGAACATAAAAAGTGACTAAAAATAACCCTACTTAATATGTCATAAAAGGATAAAATTACATCAAAGTTATTGGATGAAGTATGAATAATAATTTGATGTCCTTGGTGATTCATATCAGAAAGTTCTTAATCGAACCAAATTGAATTTGTAAAACTGGTTTTAAACTGTCAAAGAGTTTGGTTCAGTTAGCACATTTGGCAAGCTGATCATCATGGTTTTCAGTTTGTGGCTTTGTTGAACCATCCACGTCCCTGCATTAGTTCTATCACAATGCTATCAAGGTTACAGATCTCCTCCTTATCCATTCTGCATTGGAAGTTTTTTGCTTCTTAACATGCGCTTTCACCTTTTTTTAATGTTCCTTATAAGACTGAATGCTGTGTCTATGAAATATCTTATGTAAATTTCAAGCTCTAGATTGATGAAGATGATGTAGTTGAATGCTATATTGAAATGGTTTTGCTTCCAAGCATGCAGTTCTACCGTTTTAATTTTTTTAAACATTGTAGAAGACTTTATTGAAAGCTTCCGGTGGATATAAAGATGAATATATCTATTTGAGATGATGAATCATGGCGTGGATGTGGTTTCTACTTTAAGTTATCATCTATTTCTTTTCATGTTATTTTGTGCAAATAGAGCATTGGTAGAGCTTTCAATCTATTGAAGCTGATCTTTTGTTTAATTGAAAGTTTGTGAACTGCAGAAGTTTTCCCGCCCAACAAATTAGAAGATTTTGTTGAGGTGCTTAGATGAGATTGTTGATATGCTCGCAGAGAAATCTGTTTCTTGATCATTATTTTGTTTTGTAGATTTTTGGAGATCTTTGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATTCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGTGTCTCCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTTGCTTTTTATACTCATTCTCTACTGCGCACATGCACACACTACAGAACAACCTCATGGTGACTGAATGCCATGATCCCTTTTTCGTTGTTTTGCTTAATTTTATTATAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCAACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCCTCTTGA

mRNA sequence

AAAAAAAACAAAAAAAAGTTAGCTATCCGACGCCGTTTCTCAGCTCTCTCTTTCCCTCGATATTTTAGTCTCGTCTCTCAGACTCAAGCTTGAGGCTCAACATCGGCAGCTATCAGTCGCTTCCCTTGATTCCTCTCCTTTCTTCTCCTTGAACTGATTTTTGGAGATCTTTGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATTCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGTGTCTCCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCAACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCCTCTTGA

Coding sequence (CDS)

ATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATTCCAGGAACAAGGAGGCTTCACCGACGTACATTAGAGGCATTGTGTCTCCGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCATGTGGCCCTCCAACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCTGCTTCTGCCTCTTGA

Protein sequence

MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS

Homology

[Close]

BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.3e-05
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 19 LYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Sbjct: 3  LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56

[Close]

BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.3e-05
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 19 LYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Sbjct: 3  LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56

[Close]

BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 19 LYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ L+VVE
Sbjct: 3  LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot
Match: A1KB09 (50S ribosomal protein L30 OS=Azoarcus sp. (strain BH72) OX=418699 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 21 ITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRGMLQQVKRLVVVE 73
          +TLV+ + GT++ HR T+  L LR+ N TV   +TP VRGM+ +V  LV VE
Sbjct: 8  VTLVKSVIGTKQSHRATVRGLGLRRLNHTVELVDTPAVRGMVTKVAYLVKVE 59

[Close]

BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A6J1JDZ2 (uncharacterized protein LOC111484152 OS=Cucurbita maxima OX=3661 GN=LOC111484152 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.8e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 108

[Close]

BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.3e-49
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQH AL+PPLVVNHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H AL+PPLV+NHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H AL+PPLV+NHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of CmaCh20G005910 vs. ExPASy TrEMBL
Match: A0A6J1G641 (uncharacterized protein LOC111451121 OS=Cucurbita moschata OX=3662 GN=LOC111451121 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 99/107 (92.52%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASA 108
           M+QQVKRLVVVETEEM+KARKQKVEQH +L+PPLVVNHLPAPSS S+
Sbjct: 61  MIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLPAPSSGSS 107

[Close]

BLAST of CmaCh20G005910 vs. NCBI nr
Match: XP_022986405.1 (uncharacterized protein LOC111484152 [Cucurbita maxima])

HSP 1 Score: 214.2 bits (544), Expect = 5.7e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 108

[Close]

BLAST of CmaCh20G005910 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 9.1e-50
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHVAL+PPLVVNHLPAPSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPAPSSASAS 108

[Close]

BLAST of CmaCh20G005910 vs. NCBI nr
Match: KAG7010749.1 (rpmD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 5.9e-49
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQHVAL+PPLVVNHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of CmaCh20G005910 vs. NCBI nr
Match: XP_022944386.1 (uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothetical protein SDJN03_29819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKANVPI WSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 109
           MLQQVKRLVVVETEEMYKARKQKVEQH AL+PPLVVNHLP+PSSASAS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of CmaCh20G005910 vs. NCBI nr
Match: XP_008455933.1 (PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >KAA0062861.1 50S ribosomal protein L30 [Cucumis melo var. makuwa] >TYK09532.1 50S ribosomal protein L30 [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRTLEAL LRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNHLPAPSSASAS 109
           M+QQVKRLVVVETEEMYKARKQK+E+H AL+PPLV+NHLPAPSSASAS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of CmaCh20G005910 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein )

HSP 1 Score: 137.5 bits (345), Expect = 6.3e-33
Identity = 70/109 (64.22%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALCLRKCNRTVMRWNTPTVRG 60
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALQPPLVVNH-LPAPSSASAS 109
           M+ QVKR+VVVETEEMY ARK+    H AL+PPLVV+H  PA  S++ S
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHSSPATDSSNMS 109

The following BLAST results are available for this feature:

BLAST of CmaCh20G005910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8FS51	9.3e-05	48.15	50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-31...	[more]
Q8NSX3	9.3e-05	46.30	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM...	[more]
C3PL27	1.2e-04	42.59	50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / D...	[more]
A4QBL5	1.6e-04	46.30	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=...	[more]
A1KB09	2.1e-04	48.08	50S ribosomal protein L30 OS=Azoarcus sp. (strain BH72) OX=418699 GN=rpmD PE=3 S...	[more]

BLAST of CmaCh20G005910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDZ2	2.8e-52	100.00	uncharacterized protein LOC111484152 OS=Cucurbita maxima OX=3661 GN=LOC111484152...	[more]
A0A6J1FUA4	8.3e-49	94.44	uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A1S3C214	1.2e-47	91.67	50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1	[more]
A0A5A7VAZ6	1.2e-47	91.67	50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1G641	2.1e-47	92.52	uncharacterized protein LOC111451121 OS=Cucurbita moschata OX=3662 GN=LOC1114511...	[more]

BLAST of CmaCh20G005910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986405.1	5.7e-52	100.00	uncharacterized protein LOC111484152 [Cucurbita maxima]	[more]
XP_023512952.1	9.1e-50	97.22	uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]	[more]
KAG7010749.1	5.9e-49	95.37	rpmD [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022944386.1	1.7e-48	94.44	uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothet...	[more]
XP_008455933.1	2.5e-47	91.67	PREDICTED: 50S ribosomal protein L30 [Cucumis melo] >XP_008455934.1 PREDICTED: 5...	[more]

BLAST of CmaCh20G005910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55140.1	6.3e-33	64.22	ribosomal protein L30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005996	Ribosomal protein L30, bacterial-type	TIGRFAM	TIGR01308	TIGR01308	coord: 19..72 e-value: 2.0E-19 score: 67.0
IPR005996	Ribosomal protein L30, bacterial-type	PANTHER	PTHR15892	MITOCHONDRIAL RIBOSOMAL PROTEIN L30	coord: 1..106
IPR005996	Ribosomal protein L30, bacterial-type	HAMAP	MF_01371_B	Ribosomal_L30_B	coord: 16..73 score: 14.880636
IPR005996	Ribosomal protein L30, bacterial-type	CDD	cd01658	Ribosomal_L30	coord: 19..72 e-value: 6.50266E-17 score: 66.6758
IPR016082	Ribosomal protein L30, ferredoxin-like fold domain	PFAM	PF00327	Ribosomal_L30	coord: 20..69 e-value: 1.2E-16 score: 60.3
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 17..78 e-value: 3.0E-18 score: 67.0
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 18..72
None	No IPR available	PANTHER	PTHR15892:SF4	RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G005910.1	CmaCh20G005910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome