CmaCh20G005750 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh20G005750
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr20: 2753808 .. 2754435 (+)
RNA-Seq ExpressionCmaCh20G005750
SyntenyCmaCh20G005750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGTGGCGACCCCATATCGGACTTTGCCACGTTTGTCCCTGAAACTGTCGGTGAAGATGAGGAAAAAACAGGACAAGGCGCAGAGCAAGACGAGGGCGAGGGTGGCGGTTTGGCTGACACTGGTGAGGCAGTGGCCTTGGTGCGTGAAAATTGGGGACAAAATTTGGAAGCCGAGGACGGTGCCTGTGGGGAGGAGGTTGGCTAAGTGGGCTGTGCCTTTGAAGGTCTTTCTAATGGCTTTTTGGGTTGGTGTTTTTGTTGGCTTTGAAGCCATTGTTGGGGAGTTTTCCATTAATGGCTGCTGGATCTCTCGCAGCAGCTCCTCCGCGGCCAGTACCTGCTGAATTCGGCTGCCCATTTCCCCTTCCATTTTCACGATTACTCTATTTTTTTGTGCTTGTTCTTCTTCTTCTTGTTCTTGTTCTTGGCCTTGTTGGTAAGATATTTATGAACAATTTGATTGTGGAAAATATGAACCGAAAAGCTGTAAGGATTTCAAATTAAGATGAATTTTGTTGTTTTTGTTTAATGGGAAGGAATTACAGAAACAGTTCAGAACAACCAAAGTTGAATTAATAGCTCTAATCACCGTTGTTTTGATCACTAATCCATCCAATGGTTAG

mRNA sequence

ATGAAATGTGGCGACCCCATATCGGACTTTGCCACGTTTGTCCCTGAAACTGTCGGTGAAGATGAGGAAAAAACAGGACAAGGCGCAGAGCAAGACGAGGGCGAGGGTGGCGGTTTGGCTGACACTGGTGAGGCAGTGGCCTTGGTGCGTGAAAATTGGGGACAAAATTTGGAAGCCGAGGACGGTGCCTGTGGGGAGGAGCCATTGTTGGGGAGTTTTCCATTAATGGCTGCTGGATCTCTCGCAGCAGCTCCTCCGCGGCCAGAATTACAGAAACAGTTCAGAACAACCAAAGTTGAATTAATAGCTCTAATCACCGTTGTTTTGATCACTAATCCATCCAATGGTTAG

Coding sequence (CDS)

ATGAAATGTGGCGACCCCATATCGGACTTTGCCACGTTTGTCCCTGAAACTGTCGGTGAAGATGAGGAAAAAACAGGACAAGGCGCAGAGCAAGACGAGGGCGAGGGTGGCGGTTTGGCTGACACTGGTGAGGCAGTGGCCTTGGTGCGTGAAAATTGGGGACAAAATTTGGAAGCCGAGGACGGTGCCTGTGGGGAGGAGCCATTGTTGGGGAGTTTTCCATTAATGGCTGCTGGATCTCTCGCAGCAGCTCCTCCGCGGCCAGAATTACAGAAACAGTTCAGAACAACCAAAGTTGAATTAATAGCTCTAATCACCGTTGTTTTGATCACTAATCCATCCAATGGTTAG

Protein sequence

MKCGDPISDFATFVPETVGEDEEKTGQGAEQDEGEGGGLADTGEAVALVRENWGQNLEAEDGACGEEPLLGSFPLMAAGSLAAAPPRPELQKQFRTTKVELIALITVVLITNPSNG
Homology
[Close]
BLAST of CmaCh20G005750 vs. ExPASy TrEMBL
Match: A0A2P5B6P1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-08
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 4   GDPISDFATFVPETVGEDEEKTGQGAEQDEGEGGGLADTGEAVALVRENWGQNLEAEDGA 63
           GDPI+D AT VP  VGE EE+ G GA  +E + GG A  G A+ALV E+ GQNLE+E+G 
Sbjct: 92  GDPIADLATVVPTAVGEAEEEAGGGATGEEAKSGGPAHGGAALALVSESRGQNLESENGT 151

Query: 64  CGEE 68
            GEE
Sbjct: 152 GGEE 155

[Close]
BLAST of CmaCh20G005750 vs. ExPASy TrEMBL
Match: A0A2P5FJ60 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_064250 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-08
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 4   GDPISDFATFVPETVGEDEEKTGQGAEQDEGEGGGLADTGEAVALVRENWGQNLEAEDGA 63
           GDPI+D A  VP  VGE EE+ G GA  +E + GG A  G A+ALV E+ GQNLE+EDG 
Sbjct: 92  GDPIADLAAVVPTAVGEAEEEAGGGATGEEAKSGGPAHGGAALALVSESRGQNLESEDGT 151

Query: 64  CGEE 68
            GEE
Sbjct: 152 GGEE 155

[Close]
BLAST of CmaCh20G005750 vs. NCBI nr
Match: PON44448.1 (hypothetical protein PanWU01x14_266830 [Parasponia andersonii])

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-08
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 4   GDPISDFATFVPETVGEDEEKTGQGAEQDEGEGGGLADTGEAVALVRENWGQNLEAEDGA 63
           GDPI+D AT VP  VGE EE+ G GA  +E + GG A  G A+ALV E+ GQNLE+E+G 
Sbjct: 92  GDPIADLATVVPTAVGEAEEEAGGGATGEEAKSGGPAHGGAALALVSESRGQNLESENGT 151

Query: 64  CGEE 68
            GEE
Sbjct: 152 GGEE 155

[Close]
BLAST of CmaCh20G005750 vs. NCBI nr
Match: PON97835.1 (hypothetical protein TorRG33x02_064250 [Trema orientale])

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-08
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 4   GDPISDFATFVPETVGEDEEKTGQGAEQDEGEGGGLADTGEAVALVRENWGQNLEAEDGA 63
           GDPI+D A  VP  VGE EE+ G GA  +E + GG A  G A+ALV E+ GQNLE+EDG 
Sbjct: 92  GDPIADLAAVVPTAVGEAEEEAGGGATGEEAKSGGPAHGGAALALVSESRGQNLESEDGT 151

Query: 64  CGEE 68
            GEE
Sbjct: 152 GGEE 155

The following BLAST results are available for this feature:
BLAST of CmaCh20G005750 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh20G005750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5B6P13.4e-0857.81Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE... [more]
A0A2P5FJ603.4e-0857.81Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_064250 PE=4 SV... [more]
BLAST of CmaCh20G005750 vs. NCBI nr
Match NameE-valueIdentityDescription
PON44448.17.1e-0857.81hypothetical protein PanWU01x14_266830 [Parasponia andersonii][more]
PON97835.17.1e-0857.81hypothetical protein TorRG33x02_064250 [Trema orientale][more]
BLAST of CmaCh20G005750 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G005750.1CmaCh20G005750.1mRNA