CmaCh20G003440 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh20G003440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	30S ribosomal protein S18
Location	Cma_Chr20: 1685581 .. 1688415 (+)
RNA-Seq Expression	CmaCh20G003440
Synteny	CmaCh20G003440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGCCTTGTTTGGCCTTTCACTAACCGGCGGCAGCTGAAACAGCAACCCTACGGGATTCAATTCGAACTTCGGTTTCATTTCAAGCTTTCGCATCCAGTGGTCTTCCCCTTCTTAGGCTCTGCTAATTTTTGTTCTGTGCGAAATGAGTACCGTTCAGGTTGCTTTGCGAACCCTTGGTGGAGGCTTATCGCGGAGATTTAAGCAACCTTCGGTGCTCAGAAACCTCTCCACAAACGCCGCTCGTGGTAATTTCTACTTGTTTTGGTTTTGAATCCATGAATTTATTATTTTTACTGTGATTTCTGAAGTTCGTTTTGGCTTGGGCGGAAATTTGTCAGGTTTATTCTAAGTAAATGTTTCTCAAATGTGTCTCTGTTTAGACATCGGTTTTACGAGGTTTTTCTTGTAAAATCTCAAGTTTGGTTGTGTAATTGGTAATGTGATTCAAGGCATGGTTTTACAATTTTCATGTTTAAAACTTTTATGCAGACAGTGGCTTTGATGATAAGGGAAAACCTGATTCGTTTGAGTCTGCTGATGACTTTGAACGTCGGATATTCGGGGGTGTTTCTGCGGGCGATTCCGGAAATGATGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGTTCGCGACTGAGTGGAGGAAACAATTTTCAGGCGCTGTATGGGCTTGATGATAATCTTAACACGCTATCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATACCGAGGAAATTGCAAAAGATGATTATACATTCAGAGCAGATATGTCTTTTAAGCCTGGATCAACATACGAAATCAAGGCATGTAGCTGAGCAACTAATTGTTTTTTATACTTGTTATGAACAAATCCTTGTCATTTTTCGTGTCAACTTCTAACTATGATTACATTATGCCTAATCCGAGCATAGTTAGACACTTATTGCCATATATGTATATATATAATTACACCATATCTAAATTTTACTTTTCTAGAACCAATCCATGTCTCCTTCAAGAAGCATATTAGGTGAGTATTATGCCCAACTATGTTCGGACGGTTAGTATTCGGATTAGATGATCCGTGATGGAAATGAACTTAACTATATTATCATGACCTCCCTGCACCTTCTGTAGATAATGTTGTAAGCTTACTGTTACCATTATTCTGAGTACTTTCGAATTTATACAGGATCTGGATCTAACAAAGCCAGGCGTACGCAAACCTCCAAAAAGGGTTGAGTTTCAGGTGACAACTGAGGAGGTCTTAAGAAAAGCTGATTTCAGGGTGAGCTTTCCTGAATTTCATTGACCTTGCCATTTTACTGATCCGCTTCTCATTTCATTATGGATAGCTAGGACTAGGAATAAAACGTGGTTGGAATTGGTGGTATGGTAACAGACCTTTTGATTCGTTGCAATCATCTCTCACTTAATCGAACATGGAATATCTTATGGTATGAATTGCTCATCTTTTAAGGATCATAGCTTATGAACTGACAAAAAATGGGTCATAGTCTTAAAAGAAATCCTTGAATTTGAATCTAGTCAATGTGAGTAGTTTAGAAATTTCGAAGTACAAGAAACAATAAGTTGGAACAGGGTTATTTACCGCTGATTTTCTGTACAGTTCTATTTAAGAAATCTGGCATGGATTATTTGTAACACCCCTAGCCTACCCCAACTCCAGGTAGATATTGTCTTTTTTGGGCTTTCCCTTCCGAGTTTCCCCTCAAAGTTTTAAAACGTGCCCATTAAGGAGAGGTTTCCACGCTCTTATGAAGAATACTTTGTTACCCTCTCCAACCAATGTGGGATATCACGATCCATCTCCTTGAGGCCCAGCGTCTTCGCTGGCACATCGCCCTGTATCTGGCTCTGATACCATTTGTAAGCCCAAGCCCACTGCTAGCATATATTGTCCACTTTGGCCCGTTACATATCGCTGTCAGCCTCACGGTTTTAAAACATGTCTGTTAGGGAGAGGTTTTTACACCCTTCTAAGGAATGCTTCGTTCTCTTCTCTAACCAAGGTGGGATCATCTTTATTTTATCAAAACTCTCCCATCCCAGAACAAGAGGAGCCCTTCCCATTAGAAATTTGGTCTGTCATCATTGACATGGTGTGGTCATCAGTAGCATGGACTATCAATTTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTTACATAAATTGCAGTTATACACGAGCTCCTGATATGGGCAGTGCGTATAAACGGTTGTATTTTCATTGTCAATCAAGGAAGAAAGATCATGCAATGACCTCTAAGTTTCTAACAGTTGCTCGTTTGCAACATTAAAGAGGTCATGAAACCATCACTATCAATTTCATTGCTACCAAAAAATATTCTTGTGGCCACTGAAATTTAGTCTTTTGCCCACGTCTCTCTTAAGGAAGTTTATTTATGTCACTTACCCCTGCTGTATGCATATCTAACAATGAGCCAATAGTTGTTTGCAGAATGTTAGGTTTCTGGCAAACTTTATTACGGACGCTGGGATCATTATCAAGAGGAGCAAGGTAAACTTTTTGAACAATAATCATATTTTGCACAAGTTGAGTCGTCATCCTTAATCTTATTTTATCACTTCAACAATTTGCAGACCCGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAAACTGCACGGGCATTTGGCTTAATGCCCTTCACGACAATGGGAACCAAATCATTTGTTTTTGGAAAAACCATGGAGGATCTTGATAAGGACTATGAGTATGAAGTTTTCGACAACAATGATGGAGGACACCCGCTCGGATCCTAG

mRNA sequence

GCCGCCTTGTTTGGCCTTTCACTAACCGGCGGCAGCTGAAACAGCAACCCTACGGGATTCAATTCGAACTTCGGTTTCATTTCAAGCTTTCGCATCCAGTGGTCTTCCCCTTCTTAGGCTCTGCTAATTTTTGTTCTGTGCGAAATGAGTACCGTTCAGGTTGCTTTGCGAACCCTTGGTGGAGGCTTATCGCGGAGATTTAAGCAACCTTCGGTGCTCAGAAACCTCTCCACAAACGCCGCTCGTGACAGTGGCTTTGATGATAAGGGAAAACCTGATTCGTTTGAGTCTGCTGATGACTTTGAACGTCGGATATTCGGGGGTGTTTCTGCGGGCGATTCCGGAAATGATGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGTTCGCGACTGAGTGGAGGAAACAATTTTCAGGCGCTGTATGGGCTTGATGATAATCTTAACACGCTATCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATACCGAGGAAATTGCAAAAGATGATTATACATTCAGAGCAGATATGTCTTTTAAGCCTGGATCAACATACGAAATCAAGGATCTGGATCTAACAAAGCCAGGCGTACGCAAACCTCCAAAAAGGGTTGAGTTTCAGGTGACAACTGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCAAACTTTATTACGGACGCTGGGATCATTATCAAGAGGAGCAAGACCCGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAAACTGCACGGGCATTTGGCTTAATGCCCTTCACGACAATGGGAACCAAATCATTTGTTTTTGGAAAAACCATGGAGGATCTTGATAAGGACTATGAGTATGAAGTTTTCGACAACAATGATGGAGGACACCCGCTCGGATCCTAG

Coding sequence (CDS)

ATGAGTACCGTTCAGGTTGCTTTGCGAACCCTTGGTGGAGGCTTATCGCGGAGATTTAAGCAACCTTCGGTGCTCAGAAACCTCTCCACAAACGCCGCTCGTGACAGTGGCTTTGATGATAAGGGAAAACCTGATTCGTTTGAGTCTGCTGATGACTTTGAACGTCGGATATTCGGGGGTGTTTCTGCGGGCGATTCCGGAAATGATGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGTTCGCGACTGAGTGGAGGAAACAATTTTCAGGCGCTGTATGGGCTTGATGATAATCTTAACACGCTATCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATACCGAGGAAATTGCAAAAGATGATTATACATTCAGAGCAGATATGTCTTTTAAGCCTGGATCAACATACGAAATCAAGGATCTGGATCTAACAAAGCCAGGCGTACGCAAACCTCCAAAAAGGGTTGAGTTTCAGGTGACAACTGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCAAACTTTATTACGGACGCTGGGATCATTATCAAGAGGAGCAAGACCCGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAAACTGCACGGGCATTTGGCTTAATGCCCTTCACGACAATGGGAACCAAATCATTTGTTTTTGGAAAAACCATGGAGGATCTTGATAAGGACTATGAGTATGAAGTTTTCGACAACAATGATGGAGGACACCCGCTCGGATCCTAG

Protein sequence

MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGGVSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKASTYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNNDGGHPLGS

Homology

[Close]

BLAST of CmaCh20G003440 vs. ExPASy Swiss-Prot
Match: P62659 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=rpsR PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-06
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 158 KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAR 217
           K   R+P ++ + + T  E     D+RNV  L  F+++ G I+ R +T +SAK QR +A+
Sbjct: 10  KEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAK 69

Query: 218 EIKTARAFGLMPFT 232
            IK AR  GL+PFT
Sbjct: 70  TIKRARILGLLPFT 82

[Close]

BLAST of CmaCh20G003440 vs. ExPASy Swiss-Prot
Match: Q5SLQ0 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=rpsR PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-06
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 158 KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAR 217
           K   R+P ++ + + T  E     D+RNV  L  F+++ G I+ R +T +SAK QR +A+
Sbjct: 10  KEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAK 69

Query: 218 EIKTARAFGLMPFT 232
            IK AR  GL+PFT
Sbjct: 70  TIKRARILGLLPFT 82

[Close]

BLAST of CmaCh20G003440 vs. ExPASy Swiss-Prot
Match: P80382 (30S ribosomal protein S18 OS=Thermus thermophilus OX=274 GN=rpsR PE=1 SV=3)

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-06
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 158 KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAR 217
           K   R+P ++ + + T  E     D+RNV  L  F+++ G I+ R +T +S K QR +A+
Sbjct: 10  KEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAK 69

Query: 218 EIKTARAFGLMPFT 232
            IK AR  GL+PFT
Sbjct: 70  TIKRARILGLLPFT 82

[Close]

BLAST of CmaCh20G003440 vs. ExPASy Swiss-Prot
Match: C1CXK0 (30S ribosomal protein S18 OS=Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115) OX=546414 GN=rpsR PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 28/74 (37.84%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 160 GVRKP--PKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAR 219
           G ++P  PK   F +   E+    D+++V+ L  F++D G I+ R +T +SAK QR++A+
Sbjct: 16  GPKRPRKPKVDPFSIGELEI---TDYKDVKMLRRFVSDTGKILPRRRTGLSAKHQRRIAQ 75

Query: 220 EIKTARAFGLMPFT 232
            IK AR   L+P+T
Sbjct: 76  TIKVARQLALLPYT 86

[Close]

BLAST of CmaCh20G003440 vs. ExPASy Swiss-Prot
Match: Q9RY50 (30S ribosomal protein S18 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=rpsR PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 28/74 (37.84%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 160 GVRKP--PKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAR 219
           G ++P  PK   F +   E+    D+++V+ L  F++D G I+ R +T +SAK QR++A+
Sbjct: 16  GPKRPRKPKVDPFSIGELEI---TDYKDVKMLRRFVSDTGKILPRRRTGLSAKHQRRIAQ 75

Query: 220 EIKTARAFGLMPFT 232
            IK AR   L+P+T
Sbjct: 76  TIKVARQLALLPYT 86

[Close]

BLAST of CmaCh20G003440 vs. ExPASy TrEMBL
Match: A0A6J1JHF0 (uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 8.1e-146
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60
           MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG
Sbjct: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60

Query: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120
           VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS
Sbjct: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120

Query: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180
           TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK
Sbjct: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180

Query: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240
           ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF
Sbjct: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240

Query: 241 GKTMEDLDKDYEYEVFDNNDGGHPLGS 268
           GKTMEDLDKDYEYEVFDNNDGGHPLGS
Sbjct: 241 GKTMEDLDKDYEYEVFDNNDGGHPLGS 267

[Close]

BLAST of CmaCh20G003440 vs. ExPASy TrEMBL
Match: A0A6J1FYC1 (uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC111448465 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 3.8e-143
Identity = 261/267 (97.75%), Postives = 264/267 (98.88%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60
           M TVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60

Query: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120
           VS GDSGNDAFFEKLDR+GKPRERIGSRLSGGNNFQ+LYGLDDNLNTLSDGMDGKLKKAS
Sbjct: 61  VSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKAS 120

Query: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180
           TYFEFDTEEIAKDDYTFRADMSFKPGSTYE+KDLDLTKPGVRKPPKRVEFQVTTEEVLRK
Sbjct: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180

Query: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240
           ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF
Sbjct: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240

Query: 241 GKTMEDLDKDYEYEVFDNNDGGHPLGS 268
           GKTMEDLDKDYEYEVFDNNDG HPLGS
Sbjct: 241 GKTMEDLDKDYEYEVFDNNDGEHPLGS 267

[Close]

BLAST of CmaCh20G003440 vs. ExPASy TrEMBL
Match: A0A6J1G586 (uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451027 PE=3 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 6.3e-130
Identity = 243/270 (90.00%), Postives = 252/270 (93.33%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60
           M  VQVA RT+GGG++R+FKQPS LRNLSTNAARD  FDD+GK +SFESADDFERRIFGG
Sbjct: 1   MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGG 60

Query: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120
           VS GDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYG++DNLNTLSDGMDGKLKKAS
Sbjct: 61  VSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSDGMDGKLKKAS 120

Query: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180
           TYFEFD EEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK
Sbjct: 121 TYFEFDPEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180

Query: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240
           ADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF
Sbjct: 181 ADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240

Query: 241 GKTMEDLDKDYEYEVFDNN---DGGHPLGS 268
           GKTME LDKDYEYEVF+NN   D G P GS
Sbjct: 241 GKTMEYLDKDYEYEVFENNTDADRGRPHGS 270

[Close]

BLAST of CmaCh20G003440 vs. ExPASy TrEMBL
Match: A0A6J1D4R9 (uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017003 PE=3 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.6e-128
Identity = 242/271 (89.30%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDD-KGKPDSFESADDFERRIFG 60
           M TVQ ALR+LGGGLS+RFKQ S+LR+LSTNAAR++GFDD K KPDSFESADDFERRIFG
Sbjct: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60

Query: 61  GVSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKA 120
           GVS  DSGN+AFFEKLDRLGKPRER+GSRLSGGNNFQALYGLDD LNTLSDGMDGKLKKA
Sbjct: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180
           +TYFEFD EEI+KDDYTFRADMSFKPGSTYEIKDLDL KPGVRKPPKRVEFQVTTEEVL+
Sbjct: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240
           KADFRNVRFLANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTK+FV
Sbjct: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240

Query: 241 FGKTMEDLDKDYEYEVFDNN---DGGHPLGS 268
           FGKTMEDLDKDYEYEVFDN    D GHPLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 271

[Close]

BLAST of CmaCh20G003440 vs. ExPASy TrEMBL
Match: A0A6J1KYL3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX=3661 GN=LOC111499912 PE=3 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.5e-123
Identity = 233/262 (88.93%), Postives = 242/262 (92.37%), Query Frame = 0


Query: 9   RTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGGVSAGDSGN 68
           RT+GGG++R+FKQPS LRNLSTNAARD  FDD+GK +SFESADDFERRIFGGVS GDSGN
Sbjct: 6   RTIGGGITRKFKQPSALRNLSTNAARDCSFDDEGKSNSFESADDFERRIFGGVSLGDSGN 65

Query: 69  DAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKASTYFEFDTE 128
           DAFFEKLDRLGKPRERIGSRLSGGNNFQALYG++DNLNTLSDGMDGKLKKASTYFEFD E
Sbjct: 66  DAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSDGMDGKLKKASTYFEFDPE 125

Query: 129 EIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRF 188
           EIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRK PKRVEF V TEEVLR ADFRNVRF
Sbjct: 126 EIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKLPKRVEFXVMTEEVLRXADFRNVRF 185

Query: 189 LANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEDLD 248
           LANFITDAGII KRSKT ISAKAQRKVAREIKTARAFGLMP TTMGTKSFVFGKTME LD
Sbjct: 186 LANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPLTTMGTKSFVFGKTMEYLD 245

Query: 249 KDYEYEVFDNN---DGGHPLGS 268
           KDYEYEVF+NN   D G P GS
Sbjct: 246 KDYEYEVFENNTDADRGRPHGS 267

[Close]

BLAST of CmaCh20G003440 vs. NCBI nr
Match: XP_022986919.1 (uncharacterized protein LOC111484513 [Cucurbita maxima])

HSP 1 Score: 526.2 bits (1354), Expect = 1.7e-145
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60
           MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG
Sbjct: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60

Query: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120
           VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS
Sbjct: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120

Query: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180
           TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK
Sbjct: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180

Query: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240
           ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF
Sbjct: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240

Query: 241 GKTMEDLDKDYEYEVFDNNDGGHPLGS 268
           GKTMEDLDKDYEYEVFDNNDGGHPLGS
Sbjct: 241 GKTMEDLDKDYEYEVFDNNDGGHPLGS 267

[Close]

BLAST of CmaCh20G003440 vs. NCBI nr
Match: XP_022943865.1 (uncharacterized protein LOC111448465 [Cucurbita moschata])

HSP 1 Score: 517.3 bits (1331), Expect = 7.8e-143
Identity = 261/267 (97.75%), Postives = 264/267 (98.88%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60
           M TVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60

Query: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120
           VS GDSGNDAFFEKLDR+GKPRERIGSRLSGGNNFQ+LYGLDDNLNTLSDGMDGKLKKAS
Sbjct: 61  VSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKAS 120

Query: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180
           TYFEFDTEEIAKDDYTFRADMSFKPGSTYE+KDLDLTKPGVRKPPKRVEFQVTTEEVLRK
Sbjct: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180

Query: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240
           ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF
Sbjct: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240

Query: 241 GKTMEDLDKDYEYEVFDNNDGGHPLGS 268
           GKTMEDLDKDYEYEVFDNNDG HPLGS
Sbjct: 241 GKTMEDLDKDYEYEVFDNNDGEHPLGS 267

[Close]

BLAST of CmaCh20G003440 vs. NCBI nr
Match: XP_023512473.1 (uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515.8 bits (1327), Expect = 2.3e-142
Identity = 261/267 (97.75%), Postives = 264/267 (98.88%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60
           M TVQVALRTLG GLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG
Sbjct: 1   MRTVQVALRTLGRGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60

Query: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120
           VS GDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQ+LYGLDDNLNTLSDGMDGKLKKAS
Sbjct: 61  VSTGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKAS 120

Query: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180
           TYFEFDTEEIAKDDYTFRADMSFKPGSTYE+KDLDLTKPGVRKPPKRVEFQVTTEEVLRK
Sbjct: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180

Query: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240
           ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF
Sbjct: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240

Query: 241 GKTMEDLDKDYEYEVFDNNDGGHPLGS 268
           GKTMEDLDKDYEYEVFDNNDGG+PLGS
Sbjct: 241 GKTMEDLDKDYEYEVFDNNDGGYPLGS 267

[Close]

BLAST of CmaCh20G003440 vs. NCBI nr
Match: KAG6570652.1 (hypothetical protein SDJN03_29567, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 511.9 bits (1317), Expect = 3.3e-141
Identity = 259/267 (97.00%), Postives = 262/267 (98.13%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60
           M TVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60

Query: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120
           VS GD GNDAFFEKLDR+GKPRERIGSRLSGGNNFQ+LYGLDDNLNTLSDGMDGKLKKAS
Sbjct: 61  VSTGDYGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKAS 120

Query: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180
           TYFEFDTEEIAKDDYTFRADMSFKPGSTYE+KDLDLTKPGVRKPPKRVEFQVTTEEVLRK
Sbjct: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180

Query: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240
           ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF
Sbjct: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240

Query: 241 GKTMEDLDKDYEYEVFDNNDGGHPLGS 268
           GKTMEDLDKDYEYEVFDNNDG  PLGS
Sbjct: 241 GKTMEDLDKDYEYEVFDNNDGERPLGS 267

[Close]

BLAST of CmaCh20G003440 vs. NCBI nr
Match: KAG7010502.1 (rpsR [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 505.8 bits (1301), Expect = 2.4e-139
Identity = 258/267 (96.63%), Postives = 261/267 (97.75%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60
           M TVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60

Query: 61  VSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKAS 120
           VS GDSGNDAFFEKLDR+GKPRERIGSRLSGGNNFQ+LYGLDDNLNTLSDGMDGKLKKAS
Sbjct: 61  VSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKAS 120

Query: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLRK 180
           TYFEFDTEEIAKDDYTFRADMSFKPGSTYE  DLDLTKPGVRKPPKRVEFQVTTEEVLRK
Sbjct: 121 TYFEFDTEEIAKDDYTFRADMSFKPGSTYE--DLDLTKPGVRKPPKRVEFQVTTEEVLRK 180

Query: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240
           ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF
Sbjct: 181 ADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 240

Query: 241 GKTMEDLDKDYEYEVFDNNDGGHPLGS 268
           GKTMEDLDKDYEYE+FDNNDG  PLGS
Sbjct: 241 GKTMEDLDKDYEYEIFDNNDGERPLGS 265

[Close]

BLAST of CmaCh20G003440 vs. TAIR 10
Match: AT1G07210.1 (Ribosomal protein S18 )

HSP 1 Score: 191.4 bits (485), Expect = 9.1e-49
Identity = 121/268 (45.15%), Postives = 168/268 (62.69%), Query Frame = 0


Query: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFDDKGKPDSFESADDFERRIFGG 60
           MS  + A R+L      R  +P V R+L+TNA      D      SF+S+D+ +  +FG 
Sbjct: 1   MSIARFATRSLNNVTFLRPFRPIVSRSLATNANE----DPNQNRSSFDSSDNLD-SLFGD 60

Query: 61  VSAGDSGNDAFFEKLDRLGKPRERI-------GSRLSGGNNFQALYGLDDNLNTLSDGMD 120
            +  D  ++ FF+ L +  K +          GSR SGG +       D+  +  SDG+D
Sbjct: 61  YTGNDEKSNDFFQHLSKAEKDKRDFNGYNRSGGSRYSGGGSMSK----DETFDPSSDGVD 120

Query: 121 GKLKKASTYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKP-PKRVEFQV 180
           GKLK+A+  +  D  +  K +Y+FR D +    +++ + +    +  ++ P     + +V
Sbjct: 121 GKLKEAALAYNMDEGDGFK-EYSFRPDFN----NSWGMNNFPRMQKQMQNPRQNNSKSEV 180

Query: 181 TTEEVLRKADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTT 240
           TTEEVL+ ADFRNVRFLANFIT+AGIIIKR +T ISAKAQRK+AREIKTARAFGLMPFTT
Sbjct: 181 TTEEVLKNADFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPFTT 240

Query: 241 MGTKSFVFGKTMEDLDKDYEYEVFDNND 261
           MGTK+F FGKTME+ D+D+EYEV D++D
Sbjct: 241 MGTKAFQFGKTMENRDQDFEYEVLDDDD 254

The following BLAST results are available for this feature:

BLAST of CmaCh20G003440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62659	1.9e-06	40.54	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 703...	[more]
Q5SLQ0	1.9e-06	40.54	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 /...	[more]
P80382	5.5e-06	39.19	30S ribosomal protein S18 OS=Thermus thermophilus OX=274 GN=rpsR PE=1 SV=3	[more]
C1CXK0	1.6e-05	37.84	30S ribosomal protein S18 OS=Deinococcus deserti (strain DSM 17065 / CIP 109153 ...	[more]
Q9RY50	1.6e-05	37.84	30S ribosomal protein S18 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20...	[more]

BLAST of CmaCh20G003440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JHF0	8.1e-146	100.00	uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513...	[more]
A0A6J1FYC1	3.8e-143	97.75	uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1G586	6.3e-130	90.00	uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1D4R9	2.6e-128	89.30	uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1KYL3	1.5e-123	88.93	LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX...	[more]

BLAST of CmaCh20G003440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986919.1	1.7e-145	100.00	uncharacterized protein LOC111484513 [Cucurbita maxima]	[more]
XP_022943865.1	7.8e-143	97.75	uncharacterized protein LOC111448465 [Cucurbita moschata]	[more]
XP_023512473.1	2.3e-142	97.75	uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo]	[more]
KAG6570652.1	3.3e-141	97.00	hypothetical protein SDJN03_29567, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7010502.1	2.4e-139	96.63	rpsR [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmaCh20G003440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07210.1	9.1e-49	45.15	Ribosomal protein S18	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 188..198 score: 33.33 coord: 206..220 score: 39.6 coord: 220..230 score: 52.07
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 181..228 e-value: 2.7E-15 score: 56.3
IPR001648	Ribosomal protein S18	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 27..261
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10	Ribosomal protein S18	coord: 168..233 e-value: 5.0E-19 score: 69.8
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 161..231
None	No IPR available	PANTHER	PTHR13479:SF40	28S RIBOSOMAL PROTEIN S18C, MITOCHONDRIAL	coord: 27..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G003440.1	CmaCh20G003440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome