CmaCh20G002070 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTTGTTGTCTGAGTTAATCGCGATCAAGCCGTCGAGGTCGCCGCGCCGTCTGAGTTCTGTCGTCGTCGAGCTGGCTGCGTGAGGTTGAAGCGCTACCCAATTCTTGAGGTTTAAGGGGTGAATTTATAAATTAATGCGGATTAGGGCTGTGTTTAAAAGTGGTTTTTGATCTCTTTTGCCCTTTAAAATTTGTATTCAGTTTGACAATTGCCCTGACTCGAATCACCGAGCGGGATGATCATGGAAGGAGGAGGAGGAGCAAAGGGAACGGTGGCGTCGCTGTCCTCTTTATTTCCGGCTCAGGATGCTCACAAAGCAGCGATGCGCGTCCAAGATGCGATTTCTGAGAAGCAGAGGGAGCTTGAGCATCTCCGAGGTTTCATCTCTGATAATGCTAACCTGATCAACCTTGTCCAGAAATTACCTGAAGAGCTGCACCATGAAGTCATGGTACTTTTGCTTCTTCCTTTGAGTTGGGTGTTGAGTGTTTTCAGCGTTGTTTTTTGATAGCAAAAGAAAATTTATTCGTGGGTTCGCTGTGATTGTTGTTTCGAAGGTTCCATTTGGGAAGGCGGCTTTCTTCCCGGGGCGTTTGGTTCATACTAACGAGTTTCTGGTAATGTATTGTACTCTCTTATAACTTCTGGGAAACTTATTCTCTGTATGATTGATAAAGAAGGGACAAGGGTATTATATTGTTAGGACTCCACCCAATGATACTCCCCTCAAACAAAGTACACTATTAGCTTCTCCTGAGGCCTATGAAGCTCTCGAACAACCTCCCCTTAATCGACTCAACTCCTTCTCTGGAGTCTTCGAACAAAGTACACCATTTATTCGACACTTGAGTCACTTTTGACTACACCTTCGAAGGTCCCAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATTGATAAGTTAAGGGCATGACTCTGATATCATGTTAGGAATAACGACGGTTTACACTAGTATAATATTGTCCACTTTGAGCATAAGCTCTCATGTTTTTGTTTTGGGCTTCTCCAAAATGCCTCATACCAATGGAGATGATCGTTCCCTAAATTAGTCAAATTAGTCAAACGTGGGACTCCCTCCCAACAATACTCTAATATTATACGCCCATGGATTTATTAATAGATGTTCATATTGGTTTTCAAGGAGTAAAGGGTTATTTTAGTGGAGCACATGAGACTAGTTCCTATTGTTCTTCTTTTGTTCTATTCAGTATCCTAATGACGCTCACTACTCTTAACTACTCTCAAAGTTCATTGTTGAATCCCCTTGTACTGCTTTTAACTCTGGTGCAAAATTAAGGGAAAAAGAGACATTAATGGGTTTAACTAGATCATTGTTTATGCTTTTGATCAAATGTTTGTGGCCGAGTTCTGGAAAGAATATGCGGTGAGGTTTACTTTTCAGGACGTCGAGTTGAGAACCAGACTTGAATTCAAGTGCAGGTTCTTCTGGGAGAAGGTTATTATGCTGAGAGAACATCGAAACAAACGGTCGAGATCTTGAAAAGGAGAGGTAAAGCTTTGGATTCTCAAGTTGATTCTCTGAAGGCAATGATGGATGATCTTAAGGCTGAGGCCTCATTTTTTGATGCTACGGCATCCGAAGCTGCGGTAAGCTTAGCAATTTATCGGTGAACTATATACCATAACGTGAAGTTGATAAAAATTTGAGGTTTACCTAGAAGCTAGTACATGTATTTTTTATATATTTACCGGATTATCCTACAACGTCGATGTTGATGTTCTTTATATTGCTACCAGGAGGGTCTTGTCGAGATAACTGAGGAGTATGTGGAGGAAAACAATAGTGAGCAGGAATCTGGATCAGGTCGGTTCTTATCCTCATCTCCATCCTATTGTTATGAAACATGTTAGGATTGACAATTTGGCATTGTAAGACATGTGAGGCCTTGTCTATCGTATTACATATATGAATAAATGTAACAGCTCAAGCTTACCGCTAGCAAATATTGTCTGCTTTAGCCCGTTACGTATCGCCGTCAGCGTCACGATTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACTCCCTTATAAGGAATGTTTCGTTTCTCTCTCCAACCGATGTGGGATCTCACAATCCACCCTCCTTAGGGGCTAGCATCCTCGCTGGCACACCGTTCGGTGTGTGGCTTTAATACCATTTGTAACCGCCCAAGCCCATCACTAGCTAATATTGTCCATTTTAACCCGTTTCGTTTTGTCGTTAGCCTCACGGGTTTAAAACGCGTCTATTAGGGAGAGGTTTCCACCCCCTTATAAGGAATGTTTCGTTCCTCTCTCCAACCGATGTGAGATCTCACAATCCACCCTCCTTGAGGGCACACCGTTCGGTGTCTGGCTTTAATACCATTTGTAACCATCCAAGCCCATCACTAGCAAATATTGTCCACTTTAGCCTGTTACGTTTCGTCGTCAGCCTCACGATTTTAAAACGCGTCTGCTAGAGAGAGGTTTCCACACTCTTATAAAGAATGTTTCGTTCCCCTCTCCAACCGATGTGTGATCTCACAATCCATCCTCCTTGGGGGCCAGTGTCCTCGTCGGCACACCGCTCGGTGTCTGGCTCTGATACCATTTGTAACCGTCCAAGCCCATCGCTAGCAAATATTGTCCACTTTAGCCCGTTACGTTTTGTTGTCAACCTCAAGGTTTTAAAACGCGTTTGCTAGGGAGAGGTTTCCACACTCTTACAAGGAATGTTTCGTTCCCCTCTCAAACCAATGTGGGATCTCACAATAAATGTACTTGGTTTCTGGAGTTGCCAAGCATGCATCATAATCACAGTCTGATGTTTATACGAACTACTTGTGAACACAGGTAAAACGGATGAATTACGATGATGTTATGTTTCTTTTCAGGAGTAAACAAGCAAGATGCTCCCAGTGTTTCTGGAGTTGATGAGGCAAGGATTACAGAAGAAGATGAAGAATATGCCCGTATAATGTCCAGATTGGATGAACTCGAGGAGGAGGAAGAACTTGCTGCCGCAAACGACAACCAAAACGATGAAGAAGGTGAGGAAGAGAAAGAAACTTCAAATCAATCTTTGGAGAAGCTTCATGATGCTAAGCACAGCTATTCAAAGGTAGTGTCAGAATCAAATACCTTAGAGATTTAAAGCTCGCAGAAATGCGTGGTTATCGACAAACTTACTCGATGAATTGGTGATGTATCGTTAACCATTTCTGATGATTGATCGCTTCGAAACATTCTCAGGCAAGTACATTTCCGTGTCAGAGGGATGAAGATATAGGTAGTAAAGAGCTACTGGATAAGTATCAGCAGCAACAACAAGAGGCTTCTACCAATCCATCAAATGTGACCAACCTCTTATTTGCTTTACTGTTTATTACTGTCTGTGTTCTTTGTTAAATAAAACAGCATTCATTATTAATTCATGTATATTTGTTATGCAGTGTTCAAATTTTTCAGAACAGTCTTCATCCAAAGGTTCGTTACATGGCAACAATTCTTCGACTCAGACTCGGGGAATGAGAAACACTAATTCTGCTGCAAAGTCTGTTACATTTGCTGAAGTAAAAGAAAAGAATCAAACATTGCCTGCATCTACCAGTGAGGTACTTTCAAGCTTGTTTATTGTATAGTTTCTTTAGGTGCCCTGTTGGTCTAAAGCAATGGATCTGTCCATAATTTTGAGGTTAGTTATAAGATTCGACCTCGTTAATCCGTGTCGTGTCAACTCTGTCGGGTGTAGGCTTTCACGGGATCCATTGTGGAGCGCCCTCCTATTATGCCGAAAATTTCTAAACAAGAAACAGAAACTCCATTGCAGGTGGGTTTGCTTTAGTTTAGACCATTCTTATTGCCATCATTGTACTAGTGTTCATTCATTGATGCTAAAGCAAACTGTTGATTTGGGCAGCCTTCTGGTTCTCAACCTTCAAAACCAGTATCCAGGTTCAAGATGCAAAGAAGATAGCGAGCTGCACGCTGCAATGTCGTACTTAAAAAAGTTGAAAATTTTGGTAGCAATTGATTTTGTATGGTAGTTTGTGGATGAAATTTTGTTCGAGTTCTGTATGGACTTGGTGTCTGATTCTCCAACGATATTAACTGAAGGAATTAGTATTGCCTTAAATTGCAACAGGAAGAAAGAACACTATGATTAACATACTAAATTCATGGTTTGGAAACGTTTGGAGGGTAACTCGGTCG TTCTTGTTGTCTGAGTTAATCGCGATCAAGCCGTCGAGGTCGCCGCGCCGTCTGAGTTCTGTCGTCGTCGAGCTGGCTGCCGGGATGATCATGGAAGGAGGAGGAGGAGCAAAGGGAACGGTGGCGTCGCTGTCCTCTTTATTTCCGGCTCAGGATGCTCACAAAGCAGCGATGCGCGTCCAAGATGCGATTTCTGAGAAGCAGAGGGAGCTTGAGCATCTCCGAGGTTTCATCTCTGATAATGCTAACCTGATCAACCTTGTCCAGAAATTACCTGAAGAGCTGCACCATGAAGTCATGGTTCCATTTGGGAAGGCGGCTTTCTTCCCGGGGCGTTTGGTTCATACTAACGAGTTTCTGGTTCTTCTGGGAGAAGGTTATTATGCTGAGAGAACATCGAAACAAACGGTCGAGATCTTGAAAAGGAGAGGTAAAGCTTTGGATTCTCAAGTTGATTCTCTGAAGGCAATGATGGATGATCTTAAGGCTGAGGCCTCATTTTTTGATGCTACGGCATCCGAAGCTGCGGAGGGTCTTGTCGAGATAACTGAGGAGTATGTGGAGGAAAACAATAGTGAGCAGGAATCTGGATCAGGAGTAAACAAGCAAGATGCTCCCAGTGTTTCTGGAGTTGATGAGGCAAGGATTACAGAAGAAGATGAAGAATATGCCCGTATAATGTCCAGATTGGATGAACTCGAGGAGGAGGAAGAACTTGCTGCCGCAAACGACAACCAAAACGATGAAGAAGGTGAGGAAGAGAAAGAAACTTCAAATCAATCTTTGGAGAAGCTTCATGATGCTAAGCACAGCTATTCAAAGGCAAGTACATTTCCGTGTCAGAGGGATGAAGATATAGGTAGTAAAGAGCTACTGGATAAGTATCAGCAGCAACAACAAGAGGCTTCTACCAATCCATCAAATTGTTCAAATTTTTCAGAACAGTCTTCATCCAAAGGTTCGTTACATGGCAACAATTCTTCGACTCAGACTCGGGGAATGAGAAACACTAATTCTGCTGCAAAGTCTGTTACATTTGCTGAAGTAAAAGAAAAGAATCAAACATTGCCTGCATCTACCAGTGAGGCTTTCACGGGATCCATTGTGGAGCGCCCTCCTATTATGCCGAAAATTTCTAAACAAGAAACAGAAACTCCATTGCAGCCTTCTGGTTCTCAACCTTCAAAACCAGTATCCAGGTTCAAGATGCAAAGAAGATAGCGAGCTGCACGCTGCAATGTCGTACTTAAAAAAGTTGAAAATTTTGGTAGCAATTGATTTTGTATGGTAGTTTGTGGATGAAATTTTGTTCGAGTTCTGTATGGACTTGGTGTCTGATTCTCCAACGATATTAACTGAAGGAATTAGTATTGCCTTAAATTGCAACAGGAAGAAAGAACACTATGATTAACATACTAAATTCATGGTTTGGAAACGTTTGGAGGGTAACTCGGTCG TTCTTGTTGTCTGAGTTAATCGCGATCAAGCCGTCGAGGTCGCCGCGCCGTCTGAGTTCTGTCGTCGTCGAGCTGGCTGCCGGGATGATCATGGAAGGAGGAGGAGGAGCAAAGGGAACGGTGGCGTCGCTGTCCTCTTTATTTCCGGCTCAGGATGCTCACAAAGCAGCGATGCGCGTCCAAGATGCGATTTCTGAGAAGCAGAGGGAGCTTGAGCATCTCCGAGGTTTCATCTCTGATAATGCTAACCTGATCAACCTTGTCCAGAAATTACCTGAAGAGCTGCACCATGAAGTCATGGTTCCATTTGGGAAGGCGGCTTTCTTCCCGGGGCGTTTGGTTCATACTAACGAGTTTCTGGTTCTTCTGGGAGAAGGTTATTATGCTGAGAGAACATCGAAACAAACGGTCGAGATCTTGAAAAGGAGAGGTAAAGCTTTGGATTCTCAAGTTGATTCTCTGAAGGCAATGATGGATGATCTTAAGGCTGAGGCCTCATTTTTTGATGCTACGGCATCCGAAGCTGCGGAGGGTCTTGTCGAGATAACTGAGGAGTATGTGGAGGAAAACAATAGTGAGCAGGAATCTGGATCAGGAGTAAACAAGCAAGATGCTCCCAGTGTTTCTGGAGTTGATGAGGCAAGGATTACAGAAGAAGATGAAGAATATGCCCGTATAATGTCCAGATTGGATGAACTCGAGGAGGAGGAAGAACTTGCTGCCGCAAACGACAACCAAAACGATGAAGAAGGTGAGGAAGAGAAAGAAACTTCAAATCAATCTTTGGAGAAGCTTCATGATGCTAAGCACAGCTATTCAAAGGCAAGTACATTTCCGTGTCAGAGGGATGAAGATATAGGTAGTAAAGAGCTACTGGATAAGTATCAGCAGCAACAACAAGAGGCTTCTACCAATCCATCAAATTGTTCAAATTTTTCAGAACAGTCTTCATCCAAAGGTTCGTTACATGGCAACAATTCTTCGACTCAGACTCGGGGAATGAGAAACACTAATTCTGCTGCAAAGTCTGTTACATTTGCTGAAGTAAAAGAAAAGAATCAAACATTGCCTGCATCTACCAGTGAGGCTTTCACGGGATCCATTGTGGAGCGCCCTCCTATTATGCCGAAAATTTCTAAACAAGAAACAGAAACTCCATTGCAGCCTTCTGGTTCTCAACCTTCAAAACCAGTATCCAGGTTCAAGATGCAAAGAAGATAG FLLSELIAIKPSRSPRRLSSVVVELAAGMIMEGGGGAKGTVASLSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSLKAMMDDLKAEASFFDATASEAAEGLVEITEEYVEENNSEQESGSGVNKQDAPSVSGVDEARITEEDEEYARIMSRLDELEEEEELAAANDNQNDEEGEEEKETSNQSLEKLHDAKHSYSKASTFPCQRDEDIGSKELLDKYQQQQQEASTNPSNCSNFSEQSSSKGSLHGNNSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIMPKISKQETETPLQPSGSQPSKPVSRFKMQRR Homology
BLAST of CmaCh20G002070 vs. ExPASy Swiss-Prot
Match: Q54HG4 (RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum OX=44689 GN=rmp PE=3 SV=2) HSP 1 Score: 91.7 bits (226), Expect = 2.1e-17 Identity = 81/272 (29.78%), Postives = 140/272 (51.47%), Query Frame = 0
BLAST of CmaCh20G002070 vs. ExPASy Swiss-Prot
Match: O94763 (Unconventional prefoldin RPB5 interactor 1 OS=Homo sapiens OX=9606 GN=URI1 PE=1 SV=3) HSP 1 Score: 85.1 bits (209), Expect = 2.0e-15 Identity = 77/275 (28.00%), Postives = 131/275 (47.64%), Query Frame = 0
BLAST of CmaCh20G002070 vs. ExPASy Swiss-Prot
Match: Q3B7M7 (Unconventional prefoldin RPB5 interactor OS=Bos taurus OX=9913 GN=URI1 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.6e-12 Identity = 79/307 (25.73%), Postives = 141/307 (45.93%), Query Frame = 0
BLAST of CmaCh20G002070 vs. ExPASy Swiss-Prot
Match: Q3TLD5 (Unconventional prefoldin RPB5 interactor OS=Mus musculus OX=10090 GN=Uri1 PE=1 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 7.8e-12 Identity = 69/260 (26.54%), Postives = 128/260 (49.23%), Query Frame = 0
BLAST of CmaCh20G002070 vs. ExPASy Swiss-Prot
Match: Q9W148 (Unconventional prefoldin RPB5 interactor-like protein OS=Drosophila melanogaster OX=7227 GN=uri PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 3.5e-04 Identity = 80/284 (28.17%), Postives = 127/284 (44.72%), Query Frame = 0
BLAST of CmaCh20G002070 vs. ExPASy TrEMBL
Match: A0A6J1J6D1 (RNA polymerase II subunit 5-mediating protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111483860 PE=4 SV=1) HSP 1 Score: 693.0 bits (1787), Expect = 7.6e-196 Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
BLAST of CmaCh20G002070 vs. ExPASy TrEMBL
Match: A0A6J1FUU9 (RNA polymerase II subunit 5-mediating protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111448325 PE=4 SV=1) HSP 1 Score: 669.5 bits (1726), Expect = 9.1e-189 Identity = 368/379 (97.10%), Postives = 375/379 (98.94%), Query Frame = 0
BLAST of CmaCh20G002070 vs. ExPASy TrEMBL
Match: A0A6J1D6F4 (RNA polymerase II subunit 5-mediating protein homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018055 PE=4 SV=1) HSP 1 Score: 528.9 bits (1361), Expect = 1.9e-146 Identity = 301/373 (80.70%), Postives = 331/373 (88.74%), Query Frame = 0
BLAST of CmaCh20G002070 vs. ExPASy TrEMBL
Match: A0A6J1D7S6 (RNA polymerase II subunit 5-mediating protein homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018055 PE=4 SV=1) HSP 1 Score: 524.2 bits (1349), Expect = 4.7e-145 Identity = 301/374 (80.48%), Postives = 331/374 (88.50%), Query Frame = 0
BLAST of CmaCh20G002070 vs. ExPASy TrEMBL
Match: A0A0A0KB27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127400 PE=4 SV=1) HSP 1 Score: 515.8 bits (1327), Expect = 1.7e-142 Identity = 297/381 (77.95%), Postives = 328/381 (86.09%), Query Frame = 0
BLAST of CmaCh20G002070 vs. NCBI nr
Match: XP_022985987.1 (RNA polymerase II subunit 5-mediating protein homolog [Cucurbita maxima] >XP_022985988.1 RNA polymerase II subunit 5-mediating protein homolog [Cucurbita maxima] >XP_022985989.1 RNA polymerase II subunit 5-mediating protein homolog [Cucurbita maxima]) HSP 1 Score: 693.0 bits (1787), Expect = 1.6e-195 Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
BLAST of CmaCh20G002070 vs. NCBI nr
Match: XP_023512548.1 (RNA polymerase II subunit 5-mediating protein homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 675.2 bits (1741), Expect = 3.4e-190 Identity = 370/379 (97.63%), Postives = 377/379 (99.47%), Query Frame = 0
BLAST of CmaCh20G002070 vs. NCBI nr
Match: XP_022943608.1 (RNA polymerase II subunit 5-mediating protein homolog [Cucurbita moschata] >XP_022943609.1 RNA polymerase II subunit 5-mediating protein homolog [Cucurbita moschata]) HSP 1 Score: 669.5 bits (1726), Expect = 1.9e-188 Identity = 368/379 (97.10%), Postives = 375/379 (98.94%), Query Frame = 0
BLAST of CmaCh20G002070 vs. NCBI nr
Match: KAG6570522.1 (RNA polymerase II subunit 5-mediating protein-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 667.2 bits (1720), Expect = 9.3e-188 Identity = 364/374 (97.33%), Postives = 371/374 (99.20%), Query Frame = 0
BLAST of CmaCh20G002070 vs. NCBI nr
Match: KAG7010380.1 (RNA polymerase II subunit 5-mediating protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 635.2 bits (1637), Expect = 3.9e-178 Identity = 359/395 (90.89%), Postives = 367/395 (92.91%), Query Frame = 0
BLAST of CmaCh20G002070 vs. TAIR 10
Match: AT1G03760.1 (Prefoldin chaperone subunit family protein ) HSP 1 Score: 204.9 bits (520), Expect = 1.2e-52 Identity = 160/402 (39.80%), Postives = 220/402 (54.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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