CmaCh19G008900 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCATTTTCTCGAGCAACGGAAGCAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGATTGCACATAATTTTTCGCCGCGCTCTCAGATTTAACGATGGCTTCCTTTGCCGCTAGGGCCATTTCCCGATCCTCCTTCGGCAGGGCTGCGACTCTTCTGAGCGTCGGATCCAGAGCAGCTCCGGCTCGTTCATCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTGCTGTAAGGTAAATTCCTCGCAAGCATTCGATTTCGACGAAACGTGCTCGATGTAAATTAATTATGAAAACTCTGTGAGTTGAGTTTATGATCCGTAGAAAAGTATGCTATGTTTTTCCATGTGATGTTTTTCTTTTTCTCTTTTTCTATGTAGGCTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCCATGCTTCCTTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCTGA TCATTTTCTCGAGCAACGGAAGCAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGATTGCACATAATTTTTCGCCGCGCTCTCAGATTTAACGATGGCTTCCTTTGCCGCTAGGGCCATTTCCCGATCCTCCTTCGGCAGGGCTGCGACTCTTCTGAGCGTCGGATCCAGAGCAGCTCCGGCTCGTTCATCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCCATGCTTCCTTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCTGA ATGGCTTCCTTTGCCGCTAGGGCCATTTCCCGATCCTCCTTCGGCAGGGCTGCGACTCTTCTGAGCGTCGGATCCAGAGCAGCTCCGGCTCGTTCATCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCCATGCTTCCTTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCTGA MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEGTF Homology
BLAST of CmaCh19G008900 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 2.5e-11 Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of CmaCh19G008900 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 6.2e-37 Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of CmaCh19G008900 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of CmaCh19G008900 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35 Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of CmaCh19G008900 vs. ExPASy TrEMBL
Match: A0A6J1GM60 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35 Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0
BLAST of CmaCh19G008900 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 3.3e-30 Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 0
BLAST of CmaCh19G008900 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36 Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0
BLAST of CmaCh19G008900 vs. NCBI nr
Match: XP_022969310.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 162.2 bits (409), Expect = 2.2e-36 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of CmaCh19G008900 vs. NCBI nr
Match: XP_022952574.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 157.5 bits (397), Expect = 5.4e-35 Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0
BLAST of CmaCh19G008900 vs. NCBI nr
Match: XP_022952575.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 156.8 bits (395), Expect = 9.1e-35 Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0
BLAST of CmaCh19G008900 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34 Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 0
BLAST of CmaCh19G008900 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 ) HSP 1 Score: 71.6 bits (174), Expect = 3.6e-13 Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 0
BLAST of CmaCh19G008900 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12 Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0
BLAST of CmaCh19G008900 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 ) HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12 Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of CmaCh19G008900 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 ) HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12 Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of CmaCh19G008900 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 8.9e-12 Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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