CmaCh19G006010 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCACCGAATCCCTCTCTATCTCTCTTCATATCTGCACGAGCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTTCGCCCACGATTTCCTTTTTTTTCTTTGATTTGATTTTCTATATTTGGCTGCTCCGAACGATTTCGCTTTGTCTTTGATCCTTCCGAAATGGTAGACGCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGCAGATCGAGAATCATCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTAAATTATGACTCTCTCTCTTTTGTTTTTGCTGTTTCTTGGAAGTATGATTTTGAGTTTTTCCTTGGTATCAACGAGTTTTTGCGGACTGTGCTTTGTTTTTCTGCTTTGAACGTAGCGCCAGGAGTTCGTGTGACCTAGTTTTTGTGCTCTCGAAACTAATATCCTTGATTATGAGTGATTCTTTTTCTCTTGGTGGTGCCTTGAGAAATTTTTAATGGTAGAGTGGTTTTGGGTACCTCCCATTTGAATGTTTAGTGTTAGGGCATATTCAAGTTAAATCGTGGATGAATTTCGAGTTAAGTCTTTTTGATTCAATTTTGTTTTTTTGTTTTTAAAAGAAAACATTTTACTCTTTGAATTCCCCTTGTTTTAGTTGTTATTTTCTCTTGTAGGACACTCATTTTATTTGTATCAAATGTTTTAGCTCTAAATTTTATTTCATATTAGGGAACAATTTGAAAATTTCACGTGAAATATGAGGAATGGTTTTACTCATTGTTTTACTAATTGGAAATTTCAGGTGCAAACACATTGGACAGATGAGAAACACAGATTATTTCTTGATGCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTTTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGGTGAGGCAATACATCCACAGCAAGAGTGGGAGTGAGTTCCCTATATCATTCCTCTACGTCCTTAATGATTTCCTCTTGTTTTATTTCTTTCTTAGTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACATTGGGAGAACTGATCCTTTATTGCATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGCGTACTCCGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCTGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTGCAGGTACCCGAACACATTGTTCATGTTTTCCAAACTCTTTTCCAGAGTCTCACTTTTCGTTGATACTACTGTCTAATATACTTAAAATTTGTAATCTATTCCCTTATTATGAATGTACACTATTGATGATGATCGGCCATATGCTTCATATTTTGTTGTTGTGATCTTCCAATCATTTTTCGTTATGTTGAAGGTGTTTGCAATAATTATACTAGTAGTAGTATTGACTTAAGCACCATTTAGATGCACTGTTTTTCTGATTTAAGTTTGTGTTGGTGTACCAATATGACCATTACTTTGTGATGTTACCATTAGTTGCCACATTGCCTGCACCACTTGAAGTCCTGCAAACGTTTTTGCTTAAATTTTGTGTTCATCAAATGTGTTTCCTATGAGAGGGTTTCTGAAATACGACTTAGTGCATCCGAGTTGTAAAATTTGTACATCAAGCTTAGGATATTGTGTTATCTTCCTAGCAATGGAAAATCTATATATTCTAATACATTAATCGGATAGTTTCAACTTGGTTTTCAGTGTTTTGGTAACTTTGTTCCCTTTGCTTGATTTATAGTGTTTACACCTGGGTCACAAGATTTAACGTCACAGTTCTTCATGCTATGTTACAATTAAGAACTCACGGGCTAACTGATTGCGTATCTTATCAATTTGAAGTTGATTGATGTATATTTATATTTGAAAAAGTAGAAGTCCTTTATGTAAAGTTGGATGAACATTGTTGTACGGAAAAAACGAATAAAACCAAGTAGAAATGACTAGGATGGACAGCATTTTGAATATTGATGAACCTCTAGATGAAGCCAGGCTAATGGTAGACTAATTCTAGGACAGTAGCCGTTTAAGGATGAATTAAAGCAGAAATTCTTGGGATCATAACACTTAGGTTAAATTAGAGCATCCATGTCAAGGAATTTGCCTTATTGTATGAATGTTCAATGCTTAATGTGATTTTTCTGTTTTCATACTAACTAAGTGTCTATTATCTCTTCATTGCAGAAGTTTCAGATCAAAACTTTGTGGATACGCATCCAGGAGAGTTGTCTGGTGGCACGCCTATTACAAAAAGATTGAAGAAAGCTTCCTCTGATTCTTTAGGCAACGATCGGGTAAAACTCGGGATTGCCTTTGATCTCTCTTTGGAGAACCAATAATTGCATTTTACAAATGATCCAGGACCGAATATGCTGCTATTTGATCTCTCAGGTTGCACCATATAAAAGATTATCATCAGAAAGATAAAAGCCAGATGCAAAAACTTTGTGCCTCCAAATTCAGATTTGTGTTACTGTGTAAGAGGGAGCTGACAACAACTCATTCCAACATGTTAAAACACCCGGCTGTTCAAGCTCGTTAACCGAACGCGACACGATTCTGTTTTTCCTTTTGAAAGAGCATCAAAAAGTAAATAAGGGAAGTGACAACAATAATTCTACCAGAAGATCTACGGCTGGAAGGAGAAAATACGTTTGTTTATGGTACAAACTAAACTTTTTCTTAGTTCATCAAATATAGAGTGAAATATATGTTAACCCTTTCATTTCTCCTGCTTTTTTTCTTCTTTGAGTTTGAAGAAATGGAAATTCCAATAGATTTAGGGTATGAATATACATGATATAGAGAAAGCTAGACACCGACCCTGATACTGAGATAGATATACACACCCTTTTTCATCTGTTTTGAAATACTCTCATTTTGAAGTTCAGGTAGAGACCTCAAATGTAAATTACTATTACATAAAACAATAGATTTGAACAGACTTATTGATTCTCTTTAGATGGAGCCTTTCTCTTGCTTATGGAGTATGTCGATGGCTAAGTGCTCGCTTGAGTAGTTGCTTTGTTCGAATGGTTATCATACGGGACTTAAGCTATTATATCTTTGCTTGCTTCGTTACGATCTTATATAAGCTATAATACGCAGATTCAATCATATTTCTTTAAAAAAACCATTGTTGGTTTTTTCTTAGAAAATTTGTGATGATTGTTACTATTTTGTCC TTCACCGAATCCCTCTCTATCTCTCTTCATATCTGCACGAGCCTGAATCCCGAGAGGGTTTCGGACCTAAATTTTCGCCCACGATTTCCTTTTTTTTCTTTGATTTGATTTTCTATATTTGGCTGCTCCGAACGATTTCGCTTTGTCTTTGATCCTTCCGAAATGGTAGACGCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGCAGATCGAGAATCATCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATTATTTCTTGATGCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTTTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACATTGGGAGAACTGATCCTTTATTGCATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGCGTACTCCGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCTGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTGCAGAAGTTTCAGATCAAAACTTTGTGGATACGCATCCAGGAGAGTTGTCTGGTGGCACGCCTATTACAAAAAGATTGAAGAAAGCTTCCTCTGATTCTTTAGGCAACGATCGGGTAAAACTCGGGATTGCCTTTGATCTCTCTTTGGAGAACCAATAATTGCATTTTACAAATGATCCAGGACCGAATATGCTGCTATTTGATCTCTCAGGTTGCACCATATAAAAGATTATCATCAGAAAGATAAAAGCCAGATGCAAAAACTTTGTGCCTCCAAATTCAGATTTGTGTTACTGTGTAAGAGGGAGCTGACAACAACTCATTCCAACATGTTAAAACACCCGGCTGTTCAAGCTCGTTAACCGAACGCGACACGATTCTGTTTTTCCTTTTGAAAGAGCATCAAAAAGTAAATAAGGGAAGTGACAACAATAATTCTACCAGAAGATCTACGGCTGGAAGGAGAAAATACGTTTGTTTATGGTACAAACTAAACTTTTTCTTAGTTCATCAAATATAGAGTGAAATATATGTTAACCCTTTCATTTCTCCTGCTTTTTTTCTTCTTTGAGTTTGAAGAAATGGAAATTCCAATAGATTTAGGGTATGAATATACATGATATAGAGAAAGCTAGACACCGACCCTGATACTGAGATAGATATACACACCCTTTTTCATCTGTTTTGAAATACTCTCATTTTGAAGTTCAGGTAGAGACCTCAAATGTAAATTACTATTACATAAAACAATAGATTTGAACAGACTTATTGATTCTCTTTAGATGGAGCCTTTCTCTTGCTTATGGAGTATGTCGATGGCTAAGTGCTCGCTTGAGTAGTTGCTTTGTTCGAATGGTTATCATACGGGACTTAAGCTATTATATCTTTGCTTGCTTCGTTACGATCTTATATAAGCTATAATACGCAGATTCAATCATATTTCTTTAAAAAAACCATTGTTGGTTTTTTCTTAGAAAATTTGTGATGATTGTTACTATTTTGTCC ATGGTAGACGCTCATACGCCGTCGTCCATGTCGCCGCCGGTTGCAGATCGAGAATCATCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATTATTTCTTGATGCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTTTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACATTGGGAGAACTGATCCTTTATTGCATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGCGTACTCCGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCTGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTGCAGAAGTTTCAGATCAAAACTTTGTGGATACGCATCCAGGAGAGTTGTCTGGTGGCACGCCTATTACAAAAAGATTGAAGAAAGCTTCCTCTGATTCTTTAGGCAACGATCGGGTAAAACTCGGGATTGCCTTTGATCTCTCTTTGGAGAACCAATAA MVDAHTPSSMSPPVADRESSMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTDEKHRLFLDALEASFVQDLHRYRHLRAFSSKQKMRRKPIMPNISSSESMVLQDASWQKANIGRTDPLLHKTADSPAILEDVWINHFPSAGNQRTPETTDVLEECGSCSDRSHIRNKTNSCQSARSSQQIPPCCRDSHTIVAEVSDQNFVDTHPGELSGGTPITKRLKKASSDSLGNDRVKLGIAFDLSLENQ Homology
BLAST of CmaCh19G006010 vs. ExPASy Swiss-Prot
Match: Q8L8T7 (Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 2.1e-10 Identity = 69/234 (29.49%), Postives = 105/234 (44.87%), Query Frame = 0
BLAST of CmaCh19G006010 vs. ExPASy Swiss-Prot
Match: Q8L983 (Cold-regulated protein 28 OS=Arabidopsis thaliana OX=3702 GN=COR28 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 2.2e-04 Identity = 39/128 (30.47%), Postives = 61/128 (47.66%), Query Frame = 0
BLAST of CmaCh19G006010 vs. ExPASy TrEMBL
Match: A0A6J1I4M4 (uncharacterized protein LOC111470946 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470946 PE=4 SV=1) HSP 1 Score: 519.6 bits (1337), Expect = 7.4e-144 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
BLAST of CmaCh19G006010 vs. ExPASy TrEMBL
Match: A0A6J1I9R8 (uncharacterized protein LOC111470946 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470946 PE=4 SV=1) HSP 1 Score: 495.0 bits (1273), Expect = 2.0e-136 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
BLAST of CmaCh19G006010 vs. ExPASy TrEMBL
Match: A0A6J1GKR5 (uncharacterized protein LOC111454842 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454842 PE=4 SV=1) HSP 1 Score: 485.0 bits (1247), Expect = 2.0e-133 Identity = 245/260 (94.23%), Postives = 249/260 (95.77%), Query Frame = 0
BLAST of CmaCh19G006010 vs. ExPASy TrEMBL
Match: A0A6J1GJA3 (uncharacterized protein LOC111454842 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454842 PE=4 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 3.7e-127 Identity = 234/247 (94.74%), Postives = 238/247 (96.36%), Query Frame = 0
BLAST of CmaCh19G006010 vs. ExPASy TrEMBL
Match: A0A6J1IBB9 (uncharacterized protein LOC111470946 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470946 PE=4 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 9.8e-112 Identity = 221/260 (85.00%), Postives = 221/260 (85.00%), Query Frame = 0
BLAST of CmaCh19G006010 vs. NCBI nr
Match: XP_022972372.1 (uncharacterized protein LOC111470946 isoform X1 [Cucurbita maxima]) HSP 1 Score: 519.6 bits (1337), Expect = 1.5e-143 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
BLAST of CmaCh19G006010 vs. NCBI nr
Match: XP_022972373.1 (uncharacterized protein LOC111470946 isoform X2 [Cucurbita maxima]) HSP 1 Score: 495.0 bits (1273), Expect = 4.0e-136 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
BLAST of CmaCh19G006010 vs. NCBI nr
Match: XP_023553838.1 (uncharacterized protein LOC111811294 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 485.0 bits (1247), Expect = 4.2e-133 Identity = 245/260 (94.23%), Postives = 248/260 (95.38%), Query Frame = 0
BLAST of CmaCh19G006010 vs. NCBI nr
Match: XP_022952080.1 (uncharacterized protein LOC111454842 isoform X1 [Cucurbita moschata]) HSP 1 Score: 485.0 bits (1247), Expect = 4.2e-133 Identity = 245/260 (94.23%), Postives = 249/260 (95.77%), Query Frame = 0
BLAST of CmaCh19G006010 vs. NCBI nr
Match: KAG7011651.1 (hypothetical protein SDJN02_26557 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 470.3 bits (1209), Expect = 1.1e-128 Identity = 244/279 (87.46%), Postives = 248/279 (88.89%), Query Frame = 0
BLAST of CmaCh19G006010 vs. TAIR 10
Match: AT5G42900.1 (cold regulated gene 27 ) HSP 1 Score: 67.8 bits (164), Expect = 1.5e-11 Identity = 69/234 (29.49%), Postives = 105/234 (44.87%), Query Frame = 0
BLAST of CmaCh19G006010 vs. TAIR 10
Match: AT5G42900.2 (cold regulated gene 27 ) HSP 1 Score: 67.8 bits (164), Expect = 1.5e-11 Identity = 69/234 (29.49%), Postives = 105/234 (44.87%), Query Frame = 0
BLAST of CmaCh19G006010 vs. TAIR 10
Match: AT5G42900.3 (cold regulated gene 27 ) HSP 1 Score: 66.6 bits (161), Expect = 3.3e-11 Identity = 68/233 (29.18%), Postives = 104/233 (44.64%), Query Frame = 0
BLAST of CmaCh19G006010 vs. TAIR 10
Match: AT4G33980.1 (BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 1.6e-05 Identity = 39/128 (30.47%), Postives = 61/128 (47.66%), Query Frame = 0
BLAST of CmaCh19G006010 vs. TAIR 10
Match: AT4G33980.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3). ) HSP 1 Score: 47.8 bits (112), Expect = 1.6e-05 Identity = 39/128 (30.47%), Postives = 61/128 (47.66%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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