CmaCh19G000080 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh19G000080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Sm-like protein LSM2
Location	Cma_Chr19: 54462 .. 57497 (+)
RNA-Seq Expression	CmaCh19G000080
Synteny	CmaCh19G000080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACACACCCCTTTGTGAGAGTTCTGGCGGCATTTCGACCTTTGGAAGTCGTCTATCGTCGAGCGGAGATAGACTGAACATCGGCAACTCAAACCTCTGCTGAAATGGTAATTCCTCCTTCATTCACGTACTGGTCTCCGTCGTTTAAGATTTTCGTTAATGTTAGTCCTACCTCAGGGCTGAAGCATTTGTTTGTCTCGTTTTTTGCTTCCGTTCTTTCATCTTAGATCCTCACGGTTCCTAAAATCTCTGGTCTATATGCGTTTGGAGTTTGATTTGTGTTTTGTTTCAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAAAATGACCTATCAATTAGAGGAACTCTGCACTCCGTTGATCAATATCTCAACATCAAACTTGAAAACACCAGGGTTGTTGATCAAGACAAATACCCTCACATGGTATCTAATTTCTTTACCTTTCTTGTCATTGCTGCATCTTATTTACTAGAGTTGCCTTTTAATGCTCATTTAATTCTAATAATTTGGAAGGTTGTCTGGCGAGATGCATGATATGTGGTCATGGTTCACAGATTATTTGTACCGTCGTTTGTTATCGTCACCCTAAGATTTTCATTTTATATATTGTTTTAATTGAGAATGTTGATCTTCTTTTCATCCTTTGCTCTTTCTTGAATTTTCTCGGGGGTAAAGTTTCAAGTAATTTTGTGGGTGGTTCCCAAATCGGTGAAAATTCCAAGTAATCCTGTTGCTTGGTTAGAGTTCCCAACAGGGACCTGTTAGAAATCACGACTCTCTACAATGATATGATATTGTCCACTTTGAGCATAAACTCTCATGGTTTTGCTTTGGGCTTCTCCAAAAGGCCTTATACCAATGGAGATGTATTCCTTACTTATAAATCCATGATCATTCCCTAAATTAGCCAACGTGAGACTTTCTCCCAACCATCCTCTATCAAGACCTCATTTGTTGACTTTGTTTTTAGAACAATACATTGCATATGAGTTGAGTTTGTTTTTAGAACCATACATTGTGTATGAGTTGAGGTGGATATATTAAATTTATATCTACAACCTTCTATTGTGAATTGTACCCGAGTAGAAAGTATTGTGAGAATCTTATCCAAAAAAAAGTAAGTATATGTGAAGGTAGAGGATTCTTGATAATTTCCTGTTTGAAATGAATTTGATTTTCTAATTCCATGAGGATTTTAAAACACTGGTTTTGATTGAACTCATGAATCTGGATGTTGCATCTAGTTCATGATTTTTATTTCAGCAAATCAATACTTACTGGTGTAGTGGATTAGTAGGATTTTTCTAGTATGAATTGTTCTTTTAGTAAGAATTTATGAATTATTTATTTTAAAGTTGGTGGTTGATATGACTGTCAAGTAGTTTTGTAGATCAATTTCTTCTTTCGTCAGTTAGTTTGTTCTTGTTTGATATTCAGTTAACTGGTAAATGAAGGGACGATCACTTGTATTTTCAGCACATTTTGAACGGGGTAGAATTTTTTGTTCTTGAGTCTAAATTTTAAGCTGCATTAATAAATCAGTGCGGGGGGAACACTCACATAGTAGTACTCGTGCAAGTATTTTAAGAGGCCAAGAAATGCTGCATATAAAGAGGGGCCATCTTCAGACCAAGAAATCTCATTTTGTAGACAATGTAGTTATATAGATATTGTAACTAAACGCCCAGCCTAAGTACTGTGGTGGCTTTTTGACCAAATGTTAGTTTAACACTACTCGCACAAAGGAACCGTCTTCATTCTTCAGCCTGTCAAATGTTGAGGATTGTAGGGAGAGGAGTCTCAATGATCATTAATTAAGGGGTTGATCATGGGTTTATAAGTAAGGAATACTATCTCCATTGGTATGAGGCCTTTTGGGGAAACCAAGCAAACCCATGAGAACTTATGCTCAAAGTGGATAATATCATACAGTTGTGGAGGTTCGTGATTCCTAACATGGTATTAGAGTCATGCCCTTAACTTAGCTATGTTAATGAATCCTCAAATGTCGAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAAAAGTGACTCAAGTGTCTAACAAATGGTGTATTTTGTTCAAGGGCTCTAGAAAAAAGGAGTCGAGCCTCAATTAATGGGAGACTGTTCAAGGGCTCCATAGGCCTCATGAGAAGCTTTATGGTGTACTTTGTTCGAGTGGAGGATTGTTGAGGATTGTCAGGAGAGGAGTTCCGATGATCACTAATTAAGGCGTTGATCAAGGGTTTATAAGTAAGGAATACTATTTCCATTGGTATGAGACATTTTGGGGAAACCAAAAGCAATGCCATGAGAGTTTATGCTCAAAGTGGACAATATCATATCATTGTGGAGGTTTGTGATTCCTAACCTCAAATCCGGCCAATCTTGATTGATTCTAAATCCTTCTGTGGCTTTGTAACCCACCTCATAATCATGGCCATGATGTGTAAAAAGGTATCTTGTGAGAACAAATTTTAAGCGTGTAGGAACAGGTCTTATTTCCCAGTCTCTAGTTTCTGTTTGTTGTAGAATGTGTTCTGTTTTAATTCTCTTTTCTTGTTTTTACTTGATCAAGAACATCTGTTATCTGTAATTTTTGTTGCTGTGATTGGAGTAATGGAGTTAAAATTTTACCTTTTCAGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGCGTTGATATCGAGCTGTTGCACGATGCCACGAGACGCGAGGCTCGGGGTGGCTAATGTCAGTTAGTTTGTAAGTTTGTATGGAATGGCATGGGTATTGATTAAAGTGCATTCTTTTGTGTACCGCAATGCGTGACGGTTGTACTTCGTGATGGTTGCCTCACATTATTCTGTGTTGAAGTATTGTCGTGCAAAGAATCCAATGAGATTCTAGTGAATGGTAATTCAAAGAATCCAAAGGATAAATGAATGGTAGTTTGTAGCTGTTATTTTAGTGTTCTCACATGCTATATATGTA

mRNA sequence

AACACACCCCTTTGTGAGAGTTCTGGCGGCATTTCGACCTTTGGAAGTCGTCTATCGTCGAGCGGAGATAGACTGAACATCGGCAACTCAAACCTCTGCTGAAATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAAAATGACCTATCAATTAGAGGAACTCTGCACTCCGTTGATCAATATCTCAACATCAAACTTGAAAACACCAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGCGTTGATATCGAGCTGTTGCACGATGCCACGAGACGCGAGGCTCGGGGTGGCTAATGTCAGTTAGTTTGTAAGTTTGTATGGAATGGCATGGGTATTGATTAAAGTGCATTCTTTTGTGTACCGCAATGCGTGACGGTTGTACTTCGTGATGGTTGCCTCACATTATTCTGTGTTGAAGTATTGTCGTGCAAAGAATCCAATGAGATTCTAGTGAATGGTAATTCAAAGAATCCAAAGGATAAATGAATGGTAGTTTGTAGCTGTTATTTTAGTGTTCTCACATGCTATATATGTA

Coding sequence (CDS)

ATGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACAGTCGAGTTGAAAAATGACCTATCAATTAGAGGAACTCTGCACTCCGTTGATCAATATCTCAACATCAAACTTGAAAACACCAGGGTTGTTGATCAAGACAAATACCCTCACATGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGCGTTGATATCGAGCTGTTGCACGATGCCACGAGACGCGAGGCTCGGGGTGGCTAA

Protein sequence

MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Homology

[Close]

BLAST of CmaCh19G000080 vs. ExPASy Swiss-Prot
Match: Q1H595 (Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-45
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. ExPASy Swiss-Prot
Match: Q9Y333 (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDLSI GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of CmaCh19G000080 vs. ExPASy Swiss-Prot
Match: O35900 (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33
Identity = 68/90 (75.56%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLF+S+FK LVG++V VELKNDLSI GTLHSVDQYLNIKL +  V D +KYPHMLSV+NC
Sbjct: 1  MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREA 91
          FIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90

[Close]

BLAST of CmaCh19G000080 vs. ExPASy Swiss-Prot
Match: Q54TF6 (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.5e-31
Identity = 62/91 (68.13%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS++K LVG+E+TVELKNDLSI G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NC
Sbjct: 1  MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREAR 92
          FIRGSVVRYV LP + VD+E L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91

[Close]

BLAST of CmaCh19G000080 vs. ExPASy Swiss-Prot
Match: P38203 (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-27
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN 
Sbjct: 1  MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRRE 90
          FIRGS VRYV L  + VD  LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89

[Close]

BLAST of CmaCh19G000080 vs. ExPASy TrEMBL
Match: A0A6J1HWN2 (Sm-like protein LSM2 OS=Cucurbita maxima OX=3661 GN=LOC111466963 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.4e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. ExPASy TrEMBL
Match: A0A6J1HG75 (Sm-like protein LSM2 OS=Cucurbita moschata OX=3662 GN=LOC111463792 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.4e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. ExPASy TrEMBL
Match: A0A5D2BJZ3 (Sm-like protein LSM2 OS=Gossypium darwinii OX=34276 GN=ES288_A08G082400v1 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.7e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. ExPASy TrEMBL
Match: A0A0B0N830 (Sm-like protein LSM2 OS=Gossypium arboreum OX=29729 GN=LOC108461891 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.7e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. ExPASy TrEMBL
Match: A0A5J5UQ23 (Sm-like protein LSM2 OS=Gossypium barbadense OX=3634 GN=ES319_A08G077200v1 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.7e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. NCBI nr
Match: XP_022963466.1 (sm-like protein LSM2 [Cucurbita moschata] >XP_022967419.1 sm-like protein LSM2 [Cucurbita maxima] >XP_023553723.1 sm-like protein LSM2 [Cucurbita pepo subsp. pepo] >KAG6571442.1 Sm-like protein LSM2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011208.1 Sm-like protein LSM2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 1.5e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. NCBI nr
Match: XP_010038129.1 (sm-like protein LSM2 [Eucalyptus grandis] >XP_012473956.1 PREDICTED: sm-like protein LSM2 [Gossypium raimondii] >XP_016739463.2 sm-like protein LSM2 [Gossypium hirsutum] >XP_017617356.1 PREDICTED: sm-like protein LSM2 [Gossypium arboreum] >XP_017983243.1 PREDICTED: sm-like protein LSM2 [Theobroma cacao] >XP_021279792.1 sm-like protein LSM2 [Herrania umbratica] >XP_022155587.1 sm-like protein LSM2 [Momordica charantia] >XP_022159883.1 sm-like protein LSM2 [Momordica charantia] >XP_022771071.1 sm-like protein LSM2 [Durio zibethinus] >XP_022931098.1 sm-like protein LSM2 [Cucurbita moschata] >XP_022995665.1 sm-like protein LSM2 [Cucurbita maxima] >XP_023533254.1 sm-like protein LSM2 [Cucurbita pepo subsp. pepo] >XP_028067379.1 sm-like protein LSM2 [Camellia sinensis] >XP_028090491.1 sm-like protein LSM2 [Camellia sinensis] >XP_030451694.1 sm-like protein LSM2 [Syzygium oleosum] >XP_030514491.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_030516641.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_030516643.1 sm-like protein LSM2 [Rhodamnia argentea] >XP_031373487.1 sm-like protein LSM2 [Punica granatum] >XP_038708368.1 sm-like protein LSM2 [Tripterygium wilfordii] >XP_038900043.1 sm-like protein LSM2 [Benincasa hispida] >XP_038900044.1 sm-like protein LSM2 [Benincasa hispida] >XP_039012105.1 sm-like protein LSM2 [Hibiscus syriacus] >XP_039013864.1 sm-like protein LSM2 [Hibiscus syriacus] >XP_039025119.1 sm-like protein LSM2 [Hibiscus syriacus] >KAB2016243.1 hypothetical protein ES319_D08G082900v1 [Gossypium barbadense] >KAF8006546.1 hypothetical protein BT93_K0754 [Corymbia citriodora subsp. variegata] >KAG6606434.1 Sm-like protein LSM2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036376.1 Sm-like protein LSM2 [Cucurbita argyrosperma subsp. argyrosperma] >TYG56740.1 hypothetical protein ES288_D08G087800v1 [Gossypium darwinii] >TYH57396.1 hypothetical protein ES332_D08G086900v1 [Gossypium tomentosum] >TYI68372.1 hypothetical protein E1A91_D08G085000v1 [Gossypium mustelinum])

HSP 1 Score: 191.4 bits (485), Expect = 3.4e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. NCBI nr
Match: XP_039061884.1 (sm-like protein LSM2 [Hibiscus syriacus])

HSP 1 Score: 191.4 bits (485), Expect = 3.4e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 33  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 92

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 93  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 125

[Close]

BLAST of CmaCh19G000080 vs. NCBI nr
Match: KAF5947938.1 (hypothetical protein HYC85_013895 [Camellia sinensis])

HSP 1 Score: 191.4 bits (485), Expect = 3.4e-45
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1   MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
           MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 61  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 120

Query: 61  FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
           FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 121 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 153

[Close]

BLAST of CmaCh19G000080 vs. NCBI nr
Match: XP_039035726.1 (sm-like protein LSM2 [Hibiscus syriacus])

HSP 1 Score: 191.0 bits (484), Expect = 4.5e-45
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVGREVTVELKNDL+IRGTLHSVDQYLNIKLENTRV+DQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVIDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. TAIR 10
Match: AT1G03330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 183.3 bits (464), Expect = 8.7e-47
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          MLFFSYFKDLVG+EVTVELKNDL+IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1  MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 61 FIRGSVVRYVQLPPDGVDIELLHDATRREARGG 94
          FIRGSVVRYVQLP DGVD++LLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93

[Close]

BLAST of CmaCh19G000080 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.1e-04
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 6  YFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
          + K + GR V V+L + +  RGTL  +D Y+NI +E T      +  +     + FIRG+
Sbjct: 18 FLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYG--DAFIRGN 77

Query: 66 VVRYV 71
           V Y+
Sbjct: 78 NVLYI 80

[Close]

BLAST of CmaCh19G000080 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDIELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SVRGNNIRYYIL-PDSLNLETL 79

[Close]

BLAST of CmaCh19G000080 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 41.2 bits (95), Expect = 5.3e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDIELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SLRGNNIRYYIL-PDSLNLETL 79

[Close]

BLAST of CmaCh19G000080 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 41.2 bits (95), Expect = 5.3e-04
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
          M    +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ + 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHL 60

Query: 61 FIRGSVVRYVQLPPDGVDIELL 83
           +RG+ +RY  L PD +++E L
Sbjct: 61 SLRGNNIRYYIL-PDSLNLETL 79

The following BLAST results are available for this feature:

BLAST of CmaCh19G000080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1H595	1.2e-45	93.55	Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1	[more]
Q9Y333	1.8e-33	75.56	U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV...	[more]
O35900	1.8e-33	75.56	U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 S...	[more]
Q54TF6	6.5e-31	68.13	Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX...	[more]
P38203	5.7e-27	66.29	U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATC...	[more]

BLAST of CmaCh19G000080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HWN2	7.4e-46	100.00	Sm-like protein LSM2 OS=Cucurbita maxima OX=3661 GN=LOC111466963 PE=3 SV=1	[more]
A0A6J1HG75	7.4e-46	100.00	Sm-like protein LSM2 OS=Cucurbita moschata OX=3662 GN=LOC111463792 PE=3 SV=1	[more]
A0A5D2BJZ3	1.7e-45	98.92	Sm-like protein LSM2 OS=Gossypium darwinii OX=34276 GN=ES288_A08G082400v1 PE=3 S...	[more]
A0A0B0N830	1.7e-45	98.92	Sm-like protein LSM2 OS=Gossypium arboreum OX=29729 GN=LOC108461891 PE=3 SV=1	[more]
A0A5J5UQ23	1.7e-45	98.92	Sm-like protein LSM2 OS=Gossypium barbadense OX=3634 GN=ES319_A08G077200v1 PE=3 ...	[more]

BLAST of CmaCh19G000080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963466.1	1.5e-45	100.00	sm-like protein LSM2 [Cucurbita moschata] >XP_022967419.1 sm-like protein LSM2 [...	[more]
XP_010038129.1	3.4e-45	98.92	sm-like protein LSM2 [Eucalyptus grandis] >XP_012473956.1 PREDICTED: sm-like pro...	[more]
XP_039061884.1	3.4e-45	98.92	sm-like protein LSM2 [Hibiscus syriacus]	[more]
KAF5947938.1	3.4e-45	98.92	hypothetical protein HYC85_013895 [Camellia sinensis]	[more]
XP_039035726.1	4.5e-45	97.85	sm-like protein LSM2 [Hibiscus syriacus]	[more]

BLAST of CmaCh19G000080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03330.1	8.7e-47	93.55	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	3.1e-04	33.85	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.1	4.1e-04	29.27	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	5.3e-04	29.27	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	5.3e-04	29.27	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..72 e-value: 7.0E-18 score: 75.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..71 e-value: 6.2E-17 score: 61.0
None	No IPR available	GENE3D	2.30.30.100		coord: 1..92 e-value: 3.2E-32 score: 111.8
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PIRSF	PIRSF016394	Lsm2	coord: 1..93 e-value: 4.1E-51 score: 168.9
IPR016654	U6 snRNA-associated Sm-like protein LSm2	PANTHER	PTHR13829	SNRNP CORE PROTEIN FAMILY MEMBER	coord: 1..91
IPR016654	U6 snRNA-associated Sm-like protein LSm2	CDD	cd01725	LSm2	coord: 2..90 e-value: 1.60592E-62 score: 182.403
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 3..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000080.1	CmaCh19G000080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0120115	Lsm2-8 complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding