CmaCh18G007040 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G007040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S ribosomal protein L17
Location	Cma_Chr18: 6429597 .. 6432621 (+)
RNA-Seq Expression	CmaCh18G007040
Synteny	CmaCh18G007040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCGGTTCACGATTAGGGTTTCTCTACTATAAGAAACTCGAATTTCGTCTTCCTAGTACTCTTGCTTGCAGGAGGGACTCAATCTGGTTCAGAGAGGTGAAGAATTAGCATCCGCCGCCATGGTACATTTCCTCTTTCAGCGTTCCGATCTCCTTTTTCACTTCTTATTATCTGTACAATGCTTGAAATTCCACAAGCTTAGCAAGTTTCTGAATTCAGATTTATGTTAATGTTCCCTTTTACAGGTCAAGTACTCAAGGGAGCCGGATAACATCACCAAGTGTAAGTTTGTTCTTCTTAATTTGTATTTTTTTTTTTTTTTTTTTGTTTCATATTGATTTTCGTTATGCAGTTGTATGATTTGCAATATTTCTGAGGTTCTGTTAGTAACTTAGAAGTTCAGAATCTAATAATTTTGGTTTATAATATATATTCAGCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGGTAACTTAGCTGCTTTAACTGCTTTCTCATTTCATTGTTCTTCTTCGTTGAATGAAAACCCGCCAATTCTGTGCAAATATGTAGATTTTTAATACATGTATTCATTTATAGCTGTTAATGTTTTGGATTAAGAGTAATGCCATCTACAATATTTGATGTCGTGAATGCGATTATTTTATGACTGTCTGATATTAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTATTTTGTGAATAGTGCTCTTTTTAACTTCAGGAAAATCGAATTGGATCATTATTGGGTGAACCTCTGTATAAATAATTGCTAAAGGTTCAGTAAATGATGCTACATAATCTTTGCTGCTTGCTGTCATGGTTGATAGTTTTTGGATTATGCTTATAAGATTTATAATTTTGCACTATCTTACTTTATGTTGTGCATTTGATAATTATCTGGTGCTGATTGTAAGTTTGTAACCAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTATTTTGTGAATAGTGCTCTCGTAAACTTCAGGAAAACTGAATGTATCGTTATTGGGTGAACCTCTGTTGTTCTAATTGCTGAAGGTTCAGTAAATGATGCAACATAAGCCTTATAGTATTTACTGTCTGTAAGTTTATATCGATGATGGTCCTTGGAACCTAAATTTTTATTGCTGATAGGCCTTTTCTTGTTTGACTCGAAGAACACAGGTTAAATGTTAGTAAAAAAATTTTTATGACCATTTATTAAAATAATCTTATATTATACATACTAAATATTATGTAGAAATTGGAAAAAATTTACCACATTTATGGAGGATATTCTGATATTGGACTTCCTGATGAAAAAAGCAGGGCTTCGTTGCCTCTGTGAACTGGGCTCTCGTAAACTTCAGGGAAACTAAGTGTATGGTTATTGGGTGAACCTCTGTAGTAATTATCACTGAAGGTTCAGTAAATTGTGCTACAATTTTACTATAGCATAGTGTTCAAAAAGGTGTTATACATGAAATTTCAGAAAATAAAGTGATATATGCATTAAAGAAGTGAACCTAGATAGGCTTTTATAAGTGGGGTATCAACATTTTGCTATCAGTTACTTGAAACCCTAGGAGTTATCTTGATGAAATATACCTGTTTAAAAAAAGCAGGGCTCTGTTGCCTTTTGTGAATGGTGGCTCTCGTCAAATTCAGGGAAACTGAATGCATTGTTATTGGGTGAACCTCTGTAAAGCTAGTTGCTAAAGGTTCAGTAAATGATGCTACACGAATAATATAGCTTATCGCGTAGAATGTTATCTAAGTGTAACAATTAACATTCTCATCGTGCATGAACTTGTTTTTTTATCTGTGCATTAACTAATTGCATCCACCATCTGTTTTTGTCTGTAGAATACAAGAGAGACTGCGCATGCCCTTAGGAAGTTGCCCTTGGCCAAGGCGAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGAGTTGGTCGAACTGCTCAAGCAAAAAATAGGCACTCAAATGGACAAGGACGCTGGCCTGTTAAGTCTGCAAAATTTATTCTAGATCTTCTTAAGAACGCCGAGAGTAATGCCGAAGTATGTAGGATCTTCTCTCCTAGTTACGTATGTCGTCCCTTTTTTCGATAACACTGCTTCTCACCTGACTATGGTATCTTCTTCATTCAGGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGTCGAACCTACCGTGCTCATGGAAGAATTAACCGTATGTTTTTTTCTTAAGATCTCAAAAAGAACAACACTAAATTGTTTCTGGTTTGATCATTGCATAAACTATCTGGAACGTTTGGTGTCTATTTTTTCTTGTGCAGCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGGTAAAATTTGTATTAGATTTGTGTATATTATTGGTGTTTAGGAAAGGGTTGTTCATAAATGCTTGGTTTTGTGGTGGCAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCCAATATTATTGCCGCATTTTGTACTTCTTTTTTTGTTTTAAAGCAGAGTTTGGTTGCTTAAGTCAAATACTAGAACGAGTTGTTCGGTATCCAATGCCTCTTTAACTTTTTAGTTTATGGGATCCTCGATCATGTTCATTTTGGATTTTTATTCCCTTTTAAGCCAAGAGTTCTTCAAATCTTTACTTCCTTTTTAACCTCCCTCTGTGTTTAGTTCATTGTTTGAAATCCCAATACTCCAGATCTTTTATGCTTTATGCTGAATTATAGAAATTCCCTTGTTTAATTTGAAATAAGAATATGGTTTCAAAGAACGTGGACTGTGGAGGTGGAGGTGGGAGAGGAAGATTTTGTGAAAATATATGTAATATTTTTATGTTTTTCAATTGAAAATGTCATCTCAATCTCTTTTAGAC

mRNA sequence

CAGCGGTTCACGATTAGGGTTTCTCTACTATAAGAAACTCGAATTTCGTCTTCCTAGTACTCTTGCTTGCAGGAGGGACTCAATCTGGTTCAGAGAGGTGAAGAATTAGCATCCGCCGCCATGGTCAAGTACTCAAGGGAGCCGGATAACATCACCAAGTCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGAATACAAGAGAGACTGCGCATGCCCTTAGGAAGTTGCCCTTGGCCAAGGCGAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGAGTTGGTCGAACTGCTCAAGCAAAAAATAGGCACTCAAATGGACAAGGACGCTGGCCTGTTAAGTCTGCAAAATTTATTCTAGATCTTCTTAAGAACGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGTCGAACCTACCGTGCTCATGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCCAATATTATTGCCGCATTTTGTACTTCTTTTTTTGTTTTAAAGCAGAGTTTGGTTGCTTAAGTCAAATACTAGAACGAGTTGTTCGGTATCCAATGCCTCTTTAACTTTTTAGTTTATGGGATCCTCGATCATGTTCATTTTGGATTTTTATTCCCTTTTAAGCCAAGAGTTCTTCAAATCTTTACTTCCTTTTTAACCTCCCTCTGTGTTTAGTTCATTGTTTGAAATCCCAATACTCCAGATCTTTTATGCTTTATGCTGAATTATAGAAATTCCCTTGTTTAATTTGAAATAAGAATATGGTTTCAAAGAACGTGGACTGTGGAGGTGGAGGTGGGAGAGGAAGATTTTGTGAAAATATATGTAATATTTTTATGTTTTTCAATTGAAAATGTCATCTCAATCTCTTTTAGAC

Coding sequence (CDS)

ATGGTCAAGTACTCAAGGGAGCCGGATAACATCACCAAGTCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGAATACAAGAGAGACTGCGCATGCCCTTAGGAAGTTGCCCTTGGCCAAGGCGAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGAGTTGGTCGAACTGCTCAAGCAAAAAATAGGCACTCAAATGGACAAGGACGCTGGCCTGTTAAGTCTGCAAAATTTATTCTAGATCTTCTTAAGAACGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGTCGAACCTACCGTGCTCATGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGA

Protein sequence

MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSGASS

Homology

[Close]

BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.4e-85
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDNITKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 314.3 bits (804), Expect = 9.0e-85
Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-79
Identity = 148/170 (87.06%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EP N TKS KA G DLRVHFKNTRETA ALRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD+L VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-76
Identity = 142/167 (85.03%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS +P N TKS KA G DLRVHFKNTRETA ALRK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-76
Identity = 141/171 (82.46%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSR+P N TKS KA G DLRVHFKNTRETA ALR++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKS 172
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K+
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRKA 171

[Close]

BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A6J1HQT9 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A6J1G2C7 (60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A5A7STA3 (60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002190 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A0A0KPZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A1S3BDN4 (60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_022945920.1 (60S ribosomal protein L17-2 [Cucurbita moschata] >XP_022966986.1 60S ribosomal protein L17-2-like [Cucurbita maxima] >XP_023541703.1 60S ribosomal protein L17-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.5 bits (924), Expect = 8.4e-96
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_008446047.1 (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo] >XP_011655562.1 60S ribosomal protein L17-2 [Cucumis sativus] >KAA0034200.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa] >KGN51678.1 hypothetical protein Csa_007731 [Cucumis sativus] >TYK15720.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa])

HSP 1 Score: 355.5 bits (911), Expect = 2.7e-94
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_038891549.1 (60S ribosomal protein L17-2 [Benincasa hispida])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 179/183 (97.81%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPE QLATSK+KK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPEIQLATSKAKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_022151946.1 (60S ribosomal protein L17-2 [Momordica charantia])

HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNSTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLI+SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA SK+K+GQ LRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKAKRGQVLRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_022956721.1 (60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023549829.1 60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo] >KAG6601595.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350.9 bits (899), Expect = 6.6e-93
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDN T+SCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNHTESCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL+NAESNAEVKGLDVDSLI+SHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEK+EPVKKEPETQLATSKSKK QALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKKEPVKKEPETQLATSKSKKSQALRSG 180

Query: 181 ASS 184
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of CmaCh18G007040 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 317.0 bits (811), Expect = 9.9e-87
Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDNITKSCKARG+DLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of CmaCh18G007040 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 314.3 bits (804), Expect = 6.4e-86
Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA +KSKK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of CmaCh18G007040 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 211.5 bits (537), Expect = 5.9e-55
Identity = 118/176 (67.05%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 1   MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNA                 
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNA----------------- 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQA 177
                                      ELILSEKEEPVKKEPETQLA +KSKK  A
Sbjct: 121 ---------------------------ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:

BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VI3	1.4e-85	90.23	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
P51413	9.0e-85	89.20	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
O48557	1.1e-79	87.06	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	1.2e-76	85.03	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	2.6e-76	82.46	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of CmaCh18G007040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQT9	4.1e-96	100.00	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=...	[more]
A0A6J1G2C7	4.1e-96	100.00	60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 S...	[more]
A0A5A7STA3	1.3e-94	98.91	60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0KPZ4	1.3e-94	98.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1	[more]
A0A1S3BDN4	1.3e-94	98.91	60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1	[more]

BLAST of CmaCh18G007040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945920.1	8.4e-96	100.00	60S ribosomal protein L17-2 [Cucurbita moschata] >XP_022966986.1 60S ribosomal p...	[more]
XP_008446047.1	2.7e-94	98.91	PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo] >XP_011655562.1 60S riboso...	[more]
XP_038891549.1	3.0e-93	97.81	60S ribosomal protein L17-2 [Benincasa hispida]	[more]
XP_022151946.1	3.0e-93	96.72	60S ribosomal protein L17-2 [Momordica charantia]	[more]
XP_022956721.1	6.6e-93	96.72	60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023549829.1 60S riboso...	[more]

BLAST of CmaCh18G007040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27400.1	9.9e-87	90.23	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.1	6.4e-86	89.20	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	5.9e-55	67.05	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 1..182 e-value: 1.2E-76 score: 258.5
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 1..154
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 17..152 e-value: 2.3E-39 score: 133.8
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 15..151 e-value: 3.75243E-36 score: 119.903
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 4..154 e-value: 4.9E-60 score: 199.8
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 1..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..183
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 1..183
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 127..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G007040.1	CmaCh18G007040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome