CmaCh18G007040 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAGCGGTTCACGATTAGGGTTTCTCTACTATAAGAAACTCGAATTTCGTCTTCCTAGTACTCTTGCTTGCAGGAGGGACTCAATCTGGTTCAGAGAGGTGAAGAATTAGCATCCGCCGCCATGGTACATTTCCTCTTTCAGCGTTCCGATCTCCTTTTTCACTTCTTATTATCTGTACAATGCTTGAAATTCCACAAGCTTAGCAAGTTTCTGAATTCAGATTTATGTTAATGTTCCCTTTTACAGGTCAAGTACTCAAGGGAGCCGGATAACATCACCAAGTGTAAGTTTGTTCTTCTTAATTTGTATTTTTTTTTTTTTTTTTTTGTTTCATATTGATTTTCGTTATGCAGTTGTATGATTTGCAATATTTCTGAGGTTCTGTTAGTAACTTAGAAGTTCAGAATCTAATAATTTTGGTTTATAATATATATTCAGCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGGTAACTTAGCTGCTTTAACTGCTTTCTCATTTCATTGTTCTTCTTCGTTGAATGAAAACCCGCCAATTCTGTGCAAATATGTAGATTTTTAATACATGTATTCATTTATAGCTGTTAATGTTTTGGATTAAGAGTAATGCCATCTACAATATTTGATGTCGTGAATGCGATTATTTTATGACTGTCTGATATTAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTATTTTGTGAATAGTGCTCTTTTTAACTTCAGGAAAATCGAATTGGATCATTATTGGGTGAACCTCTGTATAAATAATTGCTAAAGGTTCAGTAAATGATGCTACATAATCTTTGCTGCTTGCTGTCATGGTTGATAGTTTTTGGATTATGCTTATAAGATTTATAATTTTGCACTATCTTACTTTATGTTGTGCATTTGATAATTATCTGGTGCTGATTGTAAGTTTGTAACCAACCTGATGAAAAAAGCAGGGCTCTGTTGCCTATTTTGTGAATAGTGCTCTCGTAAACTTCAGGAAAACTGAATGTATCGTTATTGGGTGAACCTCTGTTGTTCTAATTGCTGAAGGTTCAGTAAATGATGCAACATAAGCCTTATAGTATTTACTGTCTGTAAGTTTATATCGATGATGGTCCTTGGAACCTAAATTTTTATTGCTGATAGGCCTTTTCTTGTTTGACTCGAAGAACACAGGTTAAATGTTAGTAAAAAAATTTTTATGACCATTTATTAAAATAATCTTATATTATACATACTAAATATTATGTAGAAATTGGAAAAAATTTACCACATTTATGGAGGATATTCTGATATTGGACTTCCTGATGAAAAAAGCAGGGCTTCGTTGCCTCTGTGAACTGGGCTCTCGTAAACTTCAGGGAAACTAAGTGTATGGTTATTGGGTGAACCTCTGTAGTAATTATCACTGAAGGTTCAGTAAATTGTGCTACAATTTTACTATAGCATAGTGTTCAAAAAGGTGTTATACATGAAATTTCAGAAAATAAAGTGATATATGCATTAAAGAAGTGAACCTAGATAGGCTTTTATAAGTGGGGTATCAACATTTTGCTATCAGTTACTTGAAACCCTAGGAGTTATCTTGATGAAATATACCTGTTTAAAAAAAGCAGGGCTCTGTTGCCTTTTGTGAATGGTGGCTCTCGTCAAATTCAGGGAAACTGAATGCATTGTTATTGGGTGAACCTCTGTAAAGCTAGTTGCTAAAGGTTCAGTAAATGATGCTACACGAATAATATAGCTTATCGCGTAGAATGTTATCTAAGTGTAACAATTAACATTCTCATCGTGCATGAACTTGTTTTTTTATCTGTGCATTAACTAATTGCATCCACCATCTGTTTTTGTCTGTAGAATACAAGAGAGACTGCGCATGCCCTTAGGAAGTTGCCCTTGGCCAAGGCGAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGAGTTGGTCGAACTGCTCAAGCAAAAAATAGGCACTCAAATGGACAAGGACGCTGGCCTGTTAAGTCTGCAAAATTTATTCTAGATCTTCTTAAGAACGCCGAGAGTAATGCCGAAGTATGTAGGATCTTCTCTCCTAGTTACGTATGTCGTCCCTTTTTTCGATAACACTGCTTCTCACCTGACTATGGTATCTTCTTCATTCAGGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGTCGAACCTACCGTGCTCATGGAAGAATTAACCGTATGTTTTTTTCTTAAGATCTCAAAAAGAACAACACTAAATTGTTTCTGGTTTGATCATTGCATAAACTATCTGGAACGTTTGGTGTCTATTTTTTCTTGTGCAGCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGGTAAAATTTGTATTAGATTTGTGTATATTATTGGTGTTTAGGAAAGGGTTGTTCATAAATGCTTGGTTTTGTGGTGGCAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCCAATATTATTGCCGCATTTTGTACTTCTTTTTTTGTTTTAAAGCAGAGTTTGGTTGCTTAAGTCAAATACTAGAACGAGTTGTTCGGTATCCAATGCCTCTTTAACTTTTTAGTTTATGGGATCCTCGATCATGTTCATTTTGGATTTTTATTCCCTTTTAAGCCAAGAGTTCTTCAAATCTTTACTTCCTTTTTAACCTCCCTCTGTGTTTAGTTCATTGTTTGAAATCCCAATACTCCAGATCTTTTATGCTTTATGCTGAATTATAGAAATTCCCTTGTTTAATTTGAAATAAGAATATGGTTTCAAAGAACGTGGACTGTGGAGGTGGAGGTGGGAGAGGAAGATTTTGTGAAAATATATGTAATATTTTTATGTTTTTCAATTGAAAATGTCATCTCAATCTCTTTTAGAC CAGCGGTTCACGATTAGGGTTTCTCTACTATAAGAAACTCGAATTTCGTCTTCCTAGTACTCTTGCTTGCAGGAGGGACTCAATCTGGTTCAGAGAGGTGAAGAATTAGCATCCGCCGCCATGGTCAAGTACTCAAGGGAGCCGGATAACATCACCAAGTCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGAATACAAGAGAGACTGCGCATGCCCTTAGGAAGTTGCCCTTGGCCAAGGCGAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGAGTTGGTCGAACTGCTCAAGCAAAAAATAGGCACTCAAATGGACAAGGACGCTGGCCTGTTAAGTCTGCAAAATTTATTCTAGATCTTCTTAAGAACGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGTCGAACCTACCGTGCTCATGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGATCCAATATTATTGCCGCATTTTGTACTTCTTTTTTTGTTTTAAAGCAGAGTTTGGTTGCTTAAGTCAAATACTAGAACGAGTTGTTCGGTATCCAATGCCTCTTTAACTTTTTAGTTTATGGGATCCTCGATCATGTTCATTTTGGATTTTTATTCCCTTTTAAGCCAAGAGTTCTTCAAATCTTTACTTCCTTTTTAACCTCCCTCTGTGTTTAGTTCATTGTTTGAAATCCCAATACTCCAGATCTTTTATGCTTTATGCTGAATTATAGAAATTCCCTTGTTTAATTTGAAATAAGAATATGGTTTCAAAGAACGTGGACTGTGGAGGTGGAGGTGGGAGAGGAAGATTTTGTGAAAATATATGTAATATTTTTATGTTTTTCAATTGAAAATGTCATCTCAATCTCTTTTAGAC ATGGTCAAGTACTCAAGGGAGCCGGATAACATCACCAAGTCCTGCAAAGCTCGAGGCTCCGACCTCAGAGTCCATTTCAAGAATACAAGAGAGACTGCGCATGCCCTTAGGAAGTTGCCCTTGGCCAAGGCGAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTGTGGAGGAGTTGGTCGAACTGCTCAAGCAAAAAATAGGCACTCAAATGGACAAGGACGCTGGCCTGTTAAGTCTGCAAAATTTATTCTAGATCTTCTTAAGAACGCCGAGAGTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGTCGAACCTACCGTGCTCATGGAAGAATTAACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAAAGCAAGAAGGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGA MVKYSREPDNITKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKGQALRSGASS Homology
BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 1.4e-85 Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 0
BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2) HSP 1 Score: 314.3 bits (804), Expect = 9.0e-85 Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 0
BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.1e-79 Identity = 148/170 (87.06%), Postives = 157/170 (92.35%), Query Frame = 0
BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.2e-76 Identity = 142/167 (85.03%), Postives = 151/167 (90.42%), Query Frame = 0
BLAST of CmaCh18G007040 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 2.6e-76 Identity = 141/171 (82.46%), Postives = 153/171 (89.47%), Query Frame = 0
BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A6J1HQT9 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=3 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A6J1G2C7 (60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A5A7STA3 (60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002190 PE=3 SV=1) HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94 Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0
BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A0A0KPZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1) HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94 Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0
BLAST of CmaCh18G007040 vs. ExPASy TrEMBL
Match: A0A1S3BDN4 (60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1) HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94 Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0
BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_022945920.1 (60S ribosomal protein L17-2 [Cucurbita moschata] >XP_022966986.1 60S ribosomal protein L17-2-like [Cucurbita maxima] >XP_023541703.1 60S ribosomal protein L17-2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 360.5 bits (924), Expect = 8.4e-96 Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_008446047.1 (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo] >XP_011655562.1 60S ribosomal protein L17-2 [Cucumis sativus] >KAA0034200.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa] >KGN51678.1 hypothetical protein Csa_007731 [Cucumis sativus] >TYK15720.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa]) HSP 1 Score: 355.5 bits (911), Expect = 2.7e-94 Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0
BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_038891549.1 (60S ribosomal protein L17-2 [Benincasa hispida]) HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93 Identity = 179/183 (97.81%), Postives = 180/183 (98.36%), Query Frame = 0
BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_022151946.1 (60S ribosomal protein L17-2 [Momordica charantia]) HSP 1 Score: 352.1 bits (902), Expect = 3.0e-93 Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0
BLAST of CmaCh18G007040 vs. NCBI nr
Match: XP_022956721.1 (60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023549829.1 60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo] >KAG6601595.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 350.9 bits (899), Expect = 6.6e-93 Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 0
BLAST of CmaCh18G007040 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein ) HSP 1 Score: 317.0 bits (811), Expect = 9.9e-87 Identity = 157/174 (90.23%), Postives = 167/174 (95.98%), Query Frame = 0
BLAST of CmaCh18G007040 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein ) HSP 1 Score: 314.3 bits (804), Expect = 6.4e-86 Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 0
BLAST of CmaCh18G007040 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein ) HSP 1 Score: 211.5 bits (537), Expect = 5.9e-55 Identity = 118/176 (67.05%), Postives = 124/176 (70.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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