CmaCh18G004270 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G004270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L23, chloroplastic
Location	Cma_Chr18: 2343725 .. 2343921 (-)
RNA-Seq Expression	CmaCh18G004270
Synteny	CmaCh18G004270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCAGGATCCACTAGGACAGAAATCAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGCTAGAAGGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAG

mRNA sequence

ATGGCGAATCAGGATCCACTAGGACAGAAATCAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGTCATCGACTCCCGGGAAAGGCTAGAAGGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAG

Coding sequence (CDS)

ATGGCGAATCAGGATCCACTAGGACAGAAATCAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGTCATCGACTCCCGGGAAAGGCTAGAAGGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAG

Protein sequence

MANQDPLGQKSNIGSNSSLVSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS

Homology

[Close]

BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A6G9IFP9 (Ribosomal protein L23 OS=Cistanche sinensis OX=241807 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.3e-10
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SHRLPGK RR  GTYYGTYNALQMYDHYASTGLFYSTS
Sbjct: 47 MNSHRLPGKGRRM-GTYYGTYNALQMYDHYASTGLFYSTS 85

[Close]

BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A345BCL7 (50S ribosomal protein L23, chloroplastic OS=Lindera glauca OX=332435 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-07
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SH+LPGK   KNGT+YG YNALQ YDHYASTGLFY TS
Sbjct: 50 INSHQLPGKG-LKNGTHYGAYNALQTYDHYASTGLFYFTS 88

[Close]

BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A481YK89 (Ribosomal protein L23 OS=Fagopyrum dibotrys OX=516549 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 32 KNGTYYGTYNALQMYDHYASTGLFYSTS 60
          KNGTYYGTYN LQ YDHYASTGLFYSTS
Sbjct: 62 KNGTYYGTYNVLQTYDHYASTGLFYSTS 89

[Close]

BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A481YIU6 (Ribosomal protein L23 OS=Fagopyrum dibotrys OX=516549 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 32 KNGTYYGTYNALQMYDHYASTGLFYSTS 60
          KNGTYYGTYN LQ YDHYASTGLFYSTS
Sbjct: 62 KNGTYYGTYNVLQTYDHYASTGLFYSTS 89

[Close]

BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A1Y3BUG1 (Putative ribosomal protein L25/L23 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c0512g0575371 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SHRL GKARR +  +YGT NALQ YDHYASTGLFYSTS
Sbjct: 49 MNSHRLRGKARRMD--HYGTDNALQTYDHYASTGLFYSTS 86

[Close]

BLAST of CmaCh18G004270 vs. NCBI nr
Match: QIQ22847.1 (ribosomal protein L23 [Cistanche sinensis] >QIQ22876.1 ribosomal protein L23 [Cistanche sinensis])

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SHRLPGK RR  GTYYGTYNALQMYDHYASTGLFYSTS
Sbjct: 47 MNSHRLPGKGRRM-GTYYGTYNALQMYDHYASTGLFYSTS 85

[Close]

BLAST of CmaCh18G004270 vs. NCBI nr
Match: AXF47193.1 (ribosomal protein L23 [Lindera glauca])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SH+LPGK   KNGT+YG YNALQ YDHYASTGLFY TS
Sbjct: 50 INSHQLPGKG-LKNGTHYGAYNALQTYDHYASTGLFYFTS 88

[Close]

BLAST of CmaCh18G004270 vs. NCBI nr
Match: OTF84402.1 (putative ribosomal protein L25/L23 [Helianthus annuus])

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SHRL GKARR +  +YGT NALQ YDHYASTGLFYSTS
Sbjct: 49 MNSHRLRGKARRMD--HYGTDNALQTYDHYASTGLFYSTS 86

[Close]

BLAST of CmaCh18G004270 vs. NCBI nr
Match: QBK82081.1 (ribosomal protein L23 [Fagopyrum dibotrys])

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 32 KNGTYYGTYNALQMYDHYASTGLFYSTS 60
          KNGTYYGTYN LQ YDHYASTGLFYSTS
Sbjct: 62 KNGTYYGTYNVLQTYDHYASTGLFYSTS 89

[Close]

BLAST of CmaCh18G004270 vs. NCBI nr
Match: QBK82080.1 (ribosomal protein L23 [Fagopyrum dibotrys])

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 32 KNGTYYGTYNALQMYDHYASTGLFYSTS 60
          KNGTYYGTYN LQ YDHYASTGLFYSTS
Sbjct: 62 KNGTYYGTYNVLQTYDHYASTGLFYSTS 89

The following BLAST results are available for this feature:

BLAST of CmaCh18G004270 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh18G004270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6G9IFP9	9.3e-10	87.50	Ribosomal protein L23 OS=Cistanche sinensis OX=241807 GN=rpl23 PE=3 SV=1	[more]
A0A345BCL7	5.6e-07	75.00	50S ribosomal protein L23, chloroplastic OS=Lindera glauca OX=332435 GN=rpl23 PE...	[more]
A0A481YK89	1.8e-05	92.86	Ribosomal protein L23 OS=Fagopyrum dibotrys OX=516549 GN=rpl23 PE=4 SV=1	[more]
A0A481YIU6	1.8e-05	92.86	Ribosomal protein L23 OS=Fagopyrum dibotrys OX=516549 GN=rpl23 PE=4 SV=1	[more]
A0A1Y3BUG1	1.8e-05	75.00	Putative ribosomal protein L25/L23 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00...	[more]

BLAST of CmaCh18G004270 vs. NCBI nr


Match Name	E-value	Identity	Description
QIQ22847.1	1.9e-09	87.50	ribosomal protein L23 [Cistanche sinensis] >QIQ22876.1 ribosomal protein L23 [Ci...	[more]
AXF47193.1	1.2e-06	75.00	ribosomal protein L23 [Lindera glauca]	[more]
OTF84402.1	3.7e-05	75.00	putative ribosomal protein L25/L23 [Helianthus annuus]	[more]
QBK82081.1	3.7e-05	92.86	ribosomal protein L23 [Fagopyrum dibotrys]	[more]
QBK82080.1	3.7e-05	92.86	ribosomal protein L23 [Fagopyrum dibotrys]	[more]

BLAST of CmaCh18G004270 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G004270.1	CmaCh18G004270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome