CmaCh18G004270 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh18G004270
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description50S ribosomal protein L23, chloroplastic
LocationCma_Chr18: 2343725 .. 2343921 (-)
RNA-Seq ExpressionCmaCh18G004270
SyntenyCmaCh18G004270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATCAGGATCCACTAGGACAGAAATCAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGCTAGAAGGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAG

mRNA sequence

ATGGCGAATCAGGATCCACTAGGACAGAAATCAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGTCATCGACTCCCGGGAAAGGCTAGAAGGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAG

Coding sequence (CDS)

ATGGCGAATCAGGATCCACTAGGACAGAAATCAAACATTGGGTCGAACTCTTCTTTGGTGTCAAGTCATCGACTCCCGGGAAAGGCTAGAAGGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGATGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAG

Protein sequence

MANQDPLGQKSNIGSNSSLVSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS
Homology
[Close]
BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A6G9IFP9 (Ribosomal protein L23 OS=Cistanche sinensis OX=241807 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.3e-10
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SHRLPGK RR  GTYYGTYNALQMYDHYASTGLFYSTS
Sbjct: 47 MNSHRLPGKGRRM-GTYYGTYNALQMYDHYASTGLFYSTS 85

[Close]
BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A345BCL7 (50S ribosomal protein L23, chloroplastic OS=Lindera glauca OX=332435 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-07
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SH+LPGK   KNGT+YG YNALQ YDHYASTGLFY TS
Sbjct: 50 INSHQLPGKG-LKNGTHYGAYNALQTYDHYASTGLFYFTS 88

[Close]
BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A481YK89 (Ribosomal protein L23 OS=Fagopyrum dibotrys OX=516549 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 32 KNGTYYGTYNALQMYDHYASTGLFYSTS 60
          KNGTYYGTYN LQ YDHYASTGLFYSTS
Sbjct: 62 KNGTYYGTYNVLQTYDHYASTGLFYSTS 89

[Close]
BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A481YIU6 (Ribosomal protein L23 OS=Fagopyrum dibotrys OX=516549 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 32 KNGTYYGTYNALQMYDHYASTGLFYSTS 60
          KNGTYYGTYN LQ YDHYASTGLFYSTS
Sbjct: 62 KNGTYYGTYNVLQTYDHYASTGLFYSTS 89

[Close]
BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match: A0A1Y3BUG1 (Putative ribosomal protein L25/L23 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c0512g0575371 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SHRL GKARR +  +YGT NALQ YDHYASTGLFYSTS
Sbjct: 49 MNSHRLRGKARRMD--HYGTDNALQTYDHYASTGLFYSTS 86

[Close]
BLAST of CmaCh18G004270 vs. NCBI nr
Match: QIQ22847.1 (ribosomal protein L23 [Cistanche sinensis] >QIQ22876.1 ribosomal protein L23 [Cistanche sinensis])

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SHRLPGK RR  GTYYGTYNALQMYDHYASTGLFYSTS
Sbjct: 47 MNSHRLPGKGRRM-GTYYGTYNALQMYDHYASTGLFYSTS 85

[Close]
BLAST of CmaCh18G004270 vs. NCBI nr
Match: AXF47193.1 (ribosomal protein L23 [Lindera glauca])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SH+LPGK   KNGT+YG YNALQ YDHYASTGLFY TS
Sbjct: 50 INSHQLPGKG-LKNGTHYGAYNALQTYDHYASTGLFYFTS 88

[Close]
BLAST of CmaCh18G004270 vs. NCBI nr
Match: OTF84402.1 (putative ribosomal protein L25/L23 [Helianthus annuus])

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 20 VSSHRLPGKARRKNGTYYGTYNALQMYDHYASTGLFYSTS 60
          ++SHRL GKARR +  +YGT NALQ YDHYASTGLFYSTS
Sbjct: 49 MNSHRLRGKARRMD--HYGTDNALQTYDHYASTGLFYSTS 86

[Close]
BLAST of CmaCh18G004270 vs. NCBI nr
Match: QBK82081.1 (ribosomal protein L23 [Fagopyrum dibotrys])

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 32 KNGTYYGTYNALQMYDHYASTGLFYSTS 60
          KNGTYYGTYN LQ YDHYASTGLFYSTS
Sbjct: 62 KNGTYYGTYNVLQTYDHYASTGLFYSTS 89

[Close]
BLAST of CmaCh18G004270 vs. NCBI nr
Match: QBK82080.1 (ribosomal protein L23 [Fagopyrum dibotrys])

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 32 KNGTYYGTYNALQMYDHYASTGLFYSTS 60
          KNGTYYGTYN LQ YDHYASTGLFYSTS
Sbjct: 62 KNGTYYGTYNVLQTYDHYASTGLFYSTS 89

The following BLAST results are available for this feature:
BLAST of CmaCh18G004270 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh18G004270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6G9IFP99.3e-1087.50Ribosomal protein L23 OS=Cistanche sinensis OX=241807 GN=rpl23 PE=3 SV=1[more]
A0A345BCL75.6e-0775.0050S ribosomal protein L23, chloroplastic OS=Lindera glauca OX=332435 GN=rpl23 PE... [more]
A0A481YK891.8e-0592.86Ribosomal protein L23 OS=Fagopyrum dibotrys OX=516549 GN=rpl23 PE=4 SV=1[more]
A0A481YIU61.8e-0592.86Ribosomal protein L23 OS=Fagopyrum dibotrys OX=516549 GN=rpl23 PE=4 SV=1[more]
A0A1Y3BUG11.8e-0575.00Putative ribosomal protein L25/L23 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00... [more]
BLAST of CmaCh18G004270 vs. NCBI nr
Match NameE-valueIdentityDescription
QIQ22847.11.9e-0987.50ribosomal protein L23 [Cistanche sinensis] >QIQ22876.1 ribosomal protein L23 [Ci... [more]
AXF47193.11.2e-0675.00ribosomal protein L23 [Lindera glauca][more]
OTF84402.13.7e-0575.00putative ribosomal protein L25/L23 [Helianthus annuus][more]
QBK82081.13.7e-0592.86ribosomal protein L23 [Fagopyrum dibotrys][more]
QBK82080.13.7e-0592.86ribosomal protein L23 [Fagopyrum dibotrys][more]
BLAST of CmaCh18G004270 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G004270.1CmaCh18G004270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome