CmaCh17G008210 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTGCTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCCTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTTTGCGAGCTCGGCTGCGCCGCCTCCTCGTGTACCAAGTTCAGCACCCAGAAAAACCCAGGTTCTAAACATTAATAATTTGAACTTTTTGTTTCTAAATTTTATGAAAATATATTGAAGTGTTGTTGGTTTTGTTGATGCAGCTGAAAAGAAAGTGGGAAGCTGCGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGATCTTAGCCGTTCAACTACTAGTTCGAATTTCTTTCGGTTCCGTACTACTTGTTGATTTGATATTGTCTATTTTAAACCTAAATTTTAATGACTAATCAAGATGTGTTCCACGTTGATTAATTTAGTAGAAGATGATGAGTTTACAAGTGAGGAATATTATCCCTATTGGTAGAGGTTTTTTGGGAAGCCCAAAGCACTAAAGTGTCGAACAAAGACTTTGTTCGAAGGCTCCAGAGAAAGGAGTCGAGCCTTGATTAAGGGGAAGCTATTCGAGAGCTCCATAAACCTCAAGGGAGACTTCTAGTAGTATACTTTGTTCGAGAGTAGGTCGTGCTAATATTAAATAAATTGTTAATATGTTAGAGAGGGTCACGGGATGGCATTATTATTATTATTTGATTGAACATAATTTTGGCTATATATGGCCCGTGAACTTTGTTTGTCTAAAACCACGCATCATTATTTGAGGACACCCATTTTCAAGCCATGCTTAGATCTAACACCTAATTATATCCCTTAATTAATTGGTTAACTAAGTTTACTTATTACTCAACTGTGTTTATGTTGGTAGATATGACGCAATATCTAATAAATAAGAAAACTCGA ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTGCTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCCTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTTTGCGAGCTCGGCTGCGCCGCCTCCTCGTGTACCAAGTTCAGCACCCAGAAAAACCCAGCTGAAAAGAAAGTGGGAAGCTGCGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGATCTTAGCCGTTCAACTACTAGTTCGAATTTCTTTCGGTTCCGTACTACTTGTTGATTTGATATTGTCTATTTTAAACCTAAATTTTAATGACTAATCAAGATGTGTTCCACGTTGATTAATTTAGTAGAAGATGATGAGTTTACAAGTGAGGAATATTATCCCTATTGGTAGAGGTTTTTTGGGAAGCCCAAAGCACTAAAGTGTCGAACAAAGACTTTGTTCGAAGGCTCCAGAGAAAGGAGTCGAGCCTTGATTAAGGGGAAGCTATTCGAGAGCTCCATAAACCTCAAGGGAGACTTCTAGTAGTATACTTTGTTCGAGAGTAGGTCGTGCTAATATTAAATAAATTGTTAATATGTTAGAGAGGGTCACGGGATGGCATTATTATTATTATTTGATTGAACATAATTTTGGCTATATATGGCCCGTGAACTTTGTTTGTCTAAAACCACGCATCATTATTTGAGGACACCCATTTTCAAGCCATGCTTAGATCTAACACCTAATTATATCCCTTAATTAATTGGTTAACTAAGTTTACTTATTACTCAACTGTGTTTATGTTGGTAGATATGACGCAATATCTAATAAATAAGAAAACTCGA ATGGAGAGCTGCAAGGCAAAACTGGGTTTAATGGCGTGGCTGGTGCTGAGCTCATTAACGACGGCGAATTCCACCTCATTTCAAGAATGCTACGCCACCTGCTTCCTCATATGCGCCATCACGCCCGGCGTCGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCCTGCATTATCCCATCTTTTCCTATCCACAACGCCGCCGCCGACGACGTCCACCGGCAACAAAAAAACCAGTTCTTTTGCGAGCTCGGCTGCGCCGCCTCCTCGTGTACCAAGTTCAGCACCCAGAAAAACCCAGCTGAAAAGAAAGTGGGAAGCTGCGTGGATTCGTGCTCTCGGACATGCTCCATGGATTGA MESCKAKLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHNAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSMD Homology
BLAST of CmaCh17G008210 vs. ExPASy Swiss-Prot
Match: A8MRP4 (Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09 Identity = 35/114 (30.70%), Postives = 62/114 (54.39%), Query Frame = 0
BLAST of CmaCh17G008210 vs. ExPASy TrEMBL
Match: A0A6J1JZ84 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of CmaCh17G008210 vs. ExPASy TrEMBL
Match: A0A6J1GMH5 (thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 6.8e-60 Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0
BLAST of CmaCh17G008210 vs. ExPASy TrEMBL
Match: A0A0A0K781 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44 Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 0
BLAST of CmaCh17G008210 vs. ExPASy TrEMBL
Match: A0A1S3CDU4 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43 Identity = 90/114 (78.95%), Postives = 102/114 (89.47%), Query Frame = 0
BLAST of CmaCh17G008210 vs. ExPASy TrEMBL
Match: A0A6J1CW29 (thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111015320 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 8.6e-39 Identity = 86/126 (68.25%), Postives = 99/126 (78.57%), Query Frame = 0
BLAST of CmaCh17G008210 vs. NCBI nr
Match: XP_022992447.1 (thionin-like protein 2 [Cucurbita maxima] >XP_022992448.1 thionin-like protein 2 [Cucurbita maxima]) HSP 1 Score: 248.8 bits (634), Expect = 2.3e-62 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of CmaCh17G008210 vs. NCBI nr
Match: XP_023547567.1 (thionin-like protein 2 [Cucurbita pepo subsp. pepo] >XP_023547568.1 thionin-like protein 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 240.7 bits (613), Expect = 6.3e-60 Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 0
BLAST of CmaCh17G008210 vs. NCBI nr
Match: XP_022953260.1 (thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein 2 [Cucurbita moschata]) HSP 1 Score: 239.6 bits (610), Expect = 1.4e-59 Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0
BLAST of CmaCh17G008210 vs. NCBI nr
Match: KAG7014099.1 (hypothetical protein SDJN02_24272, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 201.8 bits (512), Expect = 3.2e-48 Identity = 98/105 (93.33%), Postives = 100/105 (95.24%), Query Frame = 0
BLAST of CmaCh17G008210 vs. NCBI nr
Match: KAG6575558.1 (hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 199.1 bits (505), Expect = 2.1e-47 Identity = 101/123 (82.11%), Postives = 106/123 (86.18%), Query Frame = 0
BLAST of CmaCh17G008210 vs. TAIR 10
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. ) HSP 1 Score: 62.8 bits (151), Expect = 2.2e-10 Identity = 35/114 (30.70%), Postives = 62/114 (54.39%), Query Frame = 0
BLAST of CmaCh17G008210 vs. TAIR 10
Match: AT1G12672.2 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). ) HSP 1 Score: 51.6 bits (122), Expect = 5.0e-07 Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 0
BLAST of CmaCh17G008210 vs. TAIR 10
Match: AT1G12672.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 7.3e-06 Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|