CmaCh17G007960 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G007960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Dynein light chain
Location	Cma_Chr17: 6307493 .. 6309243 (-)
RNA-Seq Expression	CmaCh17G007960
Synteny	CmaCh17G007960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCGCCTTTGAGCTTCCCTTTTCGTACTTTCCTTCAAAATCTTAAAACGTATGTGTTAGGGAAAGGTTTTCAAACCCTTAATGTTCTCCAACATGTAAGATATCACACTAATAAAATAGAGTTGAATGGTTGAAGTCCTTAAAGTGGGGAGAGAAAATGACACAAAAATGATATTAATCGGAAGAAGTGCCAGCTTAAAACTTGAATTTCAAAAGATTCCAGAGGGGGTTCTAGAGTCTTTCCTTGTATAAAATCATCATCTATTTGCTCCCTTTCTTCTTGTTTCTGTGTTGGATTATAGTCTTGGAAGAAGAAGCATTTCAGATTGGTATAATCATCTTGTCGAGCAAATACCCACCAGTTCTGTCTTTTCAGGTAAGGGGAAAGGATGTTGGAAGGCAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTGAAGCTCTGGATCGCTATGATGTCCTCGACTGCAAATCCATTGCAGCCCACATCAAAAAGGTTCCCTCTCTCCCTTATCTCTCTCTAAGATCCCACGAGTATTCCTTATATGAGAGTGAAAACCTCCCCTGACAAAATCTGCTAGTGGTAGACTTGGGCTGCTACGCTCTATATGTAGAACATGGTTGTAGAAGAACATGGTAGCTTGAAGAGATTGGTTTGAAAATCTCAGGCTTTGATTCCTTGTTTGGTTGTGGACTTGCAGGATTTTGACAATAGATATGGAAGCGGATGGCAATGTGTGGTGGGTTCAAATTTTGGTTGCTTCTTCACCCACTCCAAAGGCTCTTTCATCTACTTCAAACTGGAGACTCTTAACTTTCTCATCTTCAAAGGGATTTGAATCTCTAGAGAGTTTGAATATCATTGTGGGTTGTTTGGATGCTTGATGTTCTAAAGCTTTTAAATGCTTTTGGTGGGTATACTATGTAAATATTGAACTCGTGAACACAGTTCTTAATCCTTTCCAAGCATTTTCAGTGCCCATTTCACTTCTCCGCCAAGATTAGCTAATTCTTGGGTTCAGACAATCAATTATAGGCAATCTCCTGGTTCATACAAATGGTCAGAAACTATCTAAACTGAGATCCCTAACAACCTAGGCTTGAATGAGAAATGGAAATAGTTTCCTTTCATCATAGAATGCTTAAAAACGATCTTTCTGGGAAGCAAGAGATGTCTCAAATATTTCCTCAGACTGATAAGAAGAGTTAAATTGTGGCCTTATGATACCAATAATGTACGAAAGCAATAGTCATAGAAGATTCAAATTATGAACATTTCCGGGTAGTACTCATTGAATCAGTTCGTTGACCCGTGGCAAACCCGAGGCATTTGCCAGTTTTTGGAAGCAGTGGTCTCATGGTTACTGGTTGCAGCTGCCATAGAAGTCTCCAGGCTACAACATAGGCTTGATCACAAAACTACACCACCGGAGTTAACAGAGGTTTATTGGAGAAGTGAGCTTCCAGGTTTCCAAGCACAAGGTTAGCCATTTCTGTACGAGTTTCAACAGTTCCACTTCCTATATGAGGCACCAGGACGACATTTTCAAGTGTAAAGAGCTCTTGAGGCACTTCAGGCTCATTCTCAAACACATCAAGTCCTGCACCGCCTAATCGGCCTTCGACCAGGGCAGCTACTAATTCGGGTTCATCAACGTGAGGACCCCTCCCAATATTGATGAGAACGCCTTTCGGACCCAATGCATCGATAACTTCCCGG

mRNA sequence

CACCGCCTTTGAGCTTCCCTTTTCGTACTTTCCTTCAAAATCTTAAAACGTATGTGTTAGGGAAAGGTTTTCAAACCCTTAATGTTCTCCAACATGTAAGATATCACACTAATAAAATAGAGTTGAATGGTTGAAGTCCTTAAAGTGGGGAGAGAAAATGACACAAAAATGATATTAATCGGAAGAAGTGCCAGCTTAAAACTTGAATTTCAAAAGATTCCAGAGGGGGTTCTAGAGTCTTTCCTTGTATAAAATCATCATCTATTTGCTCCCTTTCTTCTTGTTTCTGTGTTGGATTATAGTCTTGGAAGAAGAAGCATTTCAGATTGGTATAATCATCTTGTCGAGCAAATACCCACCAGTTCTGTCTTTTCAGGTAAGGGGAAAGGATGTTGGAAGGCAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTGAAGCTCTGGATCGCTATGATGTCCTCGACTGCAAATCCATTGCAGCCCACATCAAAAAGGATTTTGACAATAGATATGGAAGCGGATGGCAATGTGTGGTGGGTTCAAATTTTGGTTGCTTCTTCACCCACTCCAAAGGCTCTTTCATCTACTTCAAACTGGAGACTCTTAACTTTCTCATCTTCAAAGGGATTTGAATCTCTAGAGAGTTTGAATATCATTGTGGGTTGTTTGGATGCTTGATGTTCTAAAGCTTTTAAATGCTTTTGGTGGGTATACTATGTAAATATTGAACTCGTGAACACAGTTCTTAATCCTTTCCAAGCATTTTCAGTGCCCATTTCACTTCTCCGCCAAGATTAGCTAATTCTTGGGTTCAGACAATCAATTATAGGCAATCTCCTGGTTCATACAAATGGTCAGAAACTATCTAAACTGAGATCCCTAACAACCTAGGCTTGAATGAGAAATGGAAATAGTTTCCTTTCATCATAGAATGCTTAAAAACGATCTTTCTGGGAAGCAAGAGATGTCTCAAATATTTCCTCAGACTGATAAGAAGAGTTAAATTGTGGCCTTATGATACCAATAATGTACGAAAGCAATAGTCATAGAAGATTCAAATTATGAACATTTCCGGGTAGTACTCATTGAATCAGTTCGTTGACCCGTGGCAAACCCGAGGCATTTGCCAGTTTTTGGAAGCAGTGGTCTCATGGTTACTGGTTGCAGCTGCCATAGAAGTCTCCAGGCTACAACATAGGCTTGATCACAAAACTACACCACCGGAGTTAACAGAGGTTTATTGGAGAAGTGAGCTTCCAGGTTTCCAAGCACAAGGTTAGCCATTTCTGTACGAGTTTCAACAGTTCCACTTCCTATATGAGGCACCAGGACGACATTTTCAAGTGTAAAGAGCTCTTGAGGCACTTCAGGCTCATTCTCAAACACATCAAGTCCTGCACCGCCTAATCGGCCTTCGACCAGGGCAGCTACTAATTCGGGTTCATCAACGTGAGGACCCCTCCCAATATTGATGAGAACGCCTTTCGGACCCAATGCATCGATAACTTCCCGG

Coding sequence (CDS)

ATGTTGGAAGGCAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTGAAGCTCTGGATCGCTATGATGTCCTCGACTGCAAATCCATTGCAGCCCACATCAAAAAGGATTTTGACAATAGATATGGAAGCGGATGGCAATGTGTGGTGGGTTCAAATTTTGGTTGCTTCTTCACCCACTCCAAAGGCTCTTTCATCTACTTCAAACTGGAGACTCTTAACTTTCTCATCTTCAAAGGGATTTGA

Protein sequence

MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGI

Homology

[Close]

BLAST of CmaCh17G007960 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-16
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M E KA++++ DMP  MQ  A+D A++AL+++++   K IAA+IKK+FD +Y   W C+V
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFK 87

[Close]

BLAST of CmaCh17G007960 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.9e-16
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M++ KA++++ DM   MQ  A+D A++AL++Y++   K IAA+IKK+FD +Y   W C+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh17G007960 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-15
Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M + KA++++ DM  +MQ  +++ A++AL++Y++   K IAAHIKK+FD +Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh17G007960 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-15
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M + KA++++ DM  +MQ  A+D A++AL++Y++   K IAA+IKK+FD +Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh17G007960 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-15
Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          M + KA++++ DM  +MQ  +++ A++AL++Y++   K IAAHIKK+FD +Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFK 90
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

[Close]

BLAST of CmaCh17G007960 vs. ExPASy TrEMBL
Match: A0A6J1JVQ9 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111488754 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.0e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 92
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 91

[Close]

BLAST of CmaCh17G007960 vs. ExPASy TrEMBL
Match: A0A6J1GP96 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111456205 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.8e-43
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAAS+ALDRYDV DCKSIAAHIKKDFD+RYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKG 91
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKG 90

[Close]

BLAST of CmaCh17G007960 vs. ExPASy TrEMBL
Match: A0A5A7UW48 (Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002230 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YDV DCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 92
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGV 91

[Close]

BLAST of CmaCh17G007960 vs. ExPASy TrEMBL
Match: A0A0A0K947 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_7G446940 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YDV DCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 92
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGV 91

[Close]

BLAST of CmaCh17G007960 vs. ExPASy TrEMBL
Match: A0A1S3CGU5 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500588 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YDV DCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 92
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGV 91

[Close]

BLAST of CmaCh17G007960 vs. NCBI nr
Match: XP_022992454.1 (dynein light chain LC6, flagellar outer arm-like [Cucurbita maxima] >XP_022992455.1 dynein light chain LC6, flagellar outer arm-like [Cucurbita maxima])

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 92
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 91

[Close]

BLAST of CmaCh17G007960 vs. NCBI nr
Match: KAG6575532.1 (hypothetical protein SDJN03_26171, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.5 bits (467), Expect = 4.1e-43
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAAS+ALDRYDV DCKSIAAHIKKDFD+RYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 92
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 91

[Close]

BLAST of CmaCh17G007960 vs. NCBI nr
Match: XP_022953777.1 (dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata] >XP_022953778.1 dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 87/90 (96.67%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAAS+ALDRYDV DCKSIAAHIKKDFD+RYGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDVFDCKSIAAHIKKDFDDRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKG 91
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKG 90

[Close]

BLAST of CmaCh17G007960 vs. NCBI nr
Match: XP_038897874.1 (dynein light chain LC6, flagellar outer arm-like [Benincasa hispida])

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKAL+QDTDMPGKMQIQAMDAAS+ALD YDV DCKSIAAHIKKDFDNRYGSGWQCVV
Sbjct: 1  MLEGKALIQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNRYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 92
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGV 91

[Close]

BLAST of CmaCh17G007960 vs. NCBI nr
Match: XP_011659570.1 (dynein light chain LC6, flagellar outer arm [Cucumis sativus] >KGN45379.1 hypothetical protein Csa_016911 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 2.7e-42
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YDV DCKSIAAHIKKDFDN+YGSGWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGI 92
          GSNFGCFFTHSKGSFIYFKLETLNFLIFKG+
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGV 91

[Close]

BLAST of CmaCh17G007960 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 156.8 bits (395), Expect = 8.5e-39
Identity = 73/90 (81.11%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA+V+D+DMP KMQ+QAM  AS+ALD +DV DCKSIA HIKK+FD RYGSGWQCVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKG 91
          GSNFGCFFTHSKG+FIYF+LETL FLIFKG
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKG 90

[Close]

BLAST of CmaCh17G007960 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 147.1 bits (370), Expect = 6.7e-36
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA V++TDMP KMQ+QAM  AS++LD +DV D  SIAAHIKK+FD RYGSGWQCVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKG 91
          G+NFGCFFTHSKG+FIYF L TLNFLIFKG
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKG 90

[Close]

BLAST of CmaCh17G007960 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-22
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVV 60
          MLEGKA++ DTDM   M+  A+  AS+ALD +DV +   IA  IKK+FD  YGSGWQC+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKG 91
          G++FG F TH  G FI+F + +L  L+FKG
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKG 90

[Close]

BLAST of CmaCh17G007960 vs. TAIR 10
Match: AT1G52240.1 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-21
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MLEGKALVQDTDMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCV 60
          MLEGKA+V+D+DMP KMQ+QAM  AS+ALD +DV DCKSIA HIKK+FD RYGSGWQCV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59

[Close]

BLAST of CmaCh17G007960 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 80.9 bits (198), Expect = 5.9e-16
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 12  DMPGKMQIQAMDAASEALDRYDVLDCKSIAAHIKKDFDNRYGSGWQCVVGSNFGCFFTHS 71
           DMPG MQ  A   A   LD  +    K +A ++KK+FD  YG  W C+VGS+FG F THS
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  KGSFIYFKLETLNFLIFK 90
            G FIYF ++ L  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

The following BLAST results are available for this feature:

BLAST of CmaCh17G007960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	5.8e-16	46.07	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q22799	9.9e-16	44.94	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
P61285	1.7e-15	43.82	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
Q24117	1.7e-15	44.94	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
P63167	1.7e-15	43.82	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]

BLAST of CmaCh17G007960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVQ9	8.0e-45	100.00	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111488754 PE=3 SV=1	[more]
A0A6J1GP96	5.8e-43	96.67	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111456205 PE=3 SV=1	[more]
A0A5A7UW48	1.3e-42	94.51	Dynein light chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G0...	[more]
A0A0A0K947	1.3e-42	94.51	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_7G446940 PE=3 SV=1	[more]
A0A1S3CGU5	1.3e-42	94.51	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500588 PE=3 SV=1	[more]

BLAST of CmaCh17G007960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992454.1	1.7e-44	100.00	dynein light chain LC6, flagellar outer arm-like [Cucurbita maxima] >XP_02299245...	[more]
KAG6575532.1	4.1e-43	96.70	hypothetical protein SDJN03_26171, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953777.1	1.2e-42	96.67	dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata]...	[more]
XP_038897874.1	1.6e-42	94.51	dynein light chain LC6, flagellar outer arm-like [Benincasa hispida]	[more]
XP_011659570.1	2.7e-42	94.51	dynein light chain LC6, flagellar outer arm [Cucumis sativus] >KGN45379.1 hypoth...	[more]

BLAST of CmaCh17G007960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	8.5e-39	81.11	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	6.7e-36	77.78	Dynein light chain type 1 family protein	[more]
AT4G27360.1	1.9e-22	54.44	Dynein light chain type 1 family protein	[more]
AT1G52240.1	2.7e-21	76.27	RHO guanyl-nucleotide exchange factor 11	[more]
AT5G20110.1	5.9e-16	48.72	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 2.0E-42 score: 157.0
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 3.6E-32 score: 110.6
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..90
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.1E-31 score: 110.6
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..89
None	No IPR available	PANTHER	PTHR11886:SF78	DYNEIN LIGHT CHAIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G007960.1	CmaCh17G007960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding
molecular_function	GO:0005085	guanyl-nucleotide exchange factor activity