CmaCh17G007110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G007110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	mitochondrial import inner membrane translocase subunit TIM23-2-like
Location	Cma_Chr17: 5874218 .. 5874790 (+)
RNA-Seq Expression	CmaCh17G007110
Synteny	CmaCh17G007110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCATTCTTCCAAGCGCGATACTGATTCAGGGTTCGATCATGGCTCATCCCAACCGCGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGAAATTTCCAGCTTCCAACCTCCCCGGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACGGGTTGCGGTTACCTCGCTGGTGCAGTCGCCGGCGCGTCTACGGGCTTCGTCTCCGGCGTCAAGTCTTTTGAATCAGGGGATACGATGAAACTACGGATCAATCGGATTCTGAACTCGTCTGGTCATTTAGGGCGTCTTTGGGGGAATCGTCTCGGCGTGATTGGGCTGCTATATGCTGGTTTGGAGAGCGGGTTTGAAGCTGTGAGGGATACGGACGATGTGTGGAACTGTGTTGCTGCGGGACTTGGCACCGGTGCGCTTTATCGCGCAGCAAGAGGGGTGAGATCGGCGGCAGTGGCCGGCGCTATTGGCGGCGTCGTGGTTGGTATGGCGGTGACGGGTAAGCAGATGTTGAAGCGGTACGTGCCGATATGA

mRNA sequence

ATGGCGGACCATTCTTCCAAGCGCGATACTGATTCAGGGTTCGATCATGGCTCATCCCAACCGCGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGAAATTTCCAGCTTCCAACCTCCCCGGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACGGGTTGCGGTTACCTCGCTGGTGCAGTCGCCGGCGCGTCTACGGGCTTCGTCTCCGGCGTCAAGTCTTTTGAATCAGGGGATACGATGAAACTACGGATCAATCGGATTCTGAACTCGTCTGGTCATTTAGGGCGTCTTTGGGGGAATCGTCTCGGCGTGATTGGGCTGCTATATGCTGGTTTGGAGAGCGGGTTTGAAGCTGTGAGGGATACGGACGATGTGTGGAACTGTGTTGCTGCGGGACTTGGCACCGGTGCGCTTTATCGCGCAGCAAGAGGGGTGAGATCGGCGGCAGTGGCCGGCGCTATTGGCGGCGTCGTGGTTGGTATGGCGGTGACGGGTAAGCAGATGTTGAAGCGGTACGTGCCGATATGA

Coding sequence (CDS)

ATGGCGGACCATTCTTCCAAGCGCGATACTGATTCAGGGTTCGATCATGGCTCATCCCAACCGCGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGAAATTTCCAGCTTCCAACCTCCCCGGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACGGGTTGCGGTTACCTCGCTGGTGCAGTCGCCGGCGCGTCTACGGGCTTCGTCTCCGGCGTCAAGTCTTTTGAATCAGGGGATACGATGAAACTACGGATCAATCGGATTCTGAACTCGTCTGGTCATTTAGGGCGTCTTTGGGGGAATCGTCTCGGCGTGATTGGGCTGCTATATGCTGGTTTGGAGAGCGGGTTTGAAGCTGTGAGGGATACGGACGATGTGTGGAACTGTGTTGCTGCGGGACTTGGCACCGGTGCGCTTTATCGCGCAGCAAGAGGGGTGAGATCGGCGGCAGTGGCCGGCGCTATTGGCGGCGTCGTGGTTGGTATGGCGGTGACGGGTAAGCAGATGTTGAAGCGGTACGTGCCGATATGA

Protein sequence

MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVIGLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVPI

Homology

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BLAST of CmaCh17G007110 vs. ExPASy Swiss-Prot
Match: Q38820 (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana OX=3702 GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.8e-65
Identity = 126/181 (69.61%), Postives = 145/181 (80.11%), Query Frame = 0


Query: 15  DHGSSQ-PRLYNPYKDLQVPYRN----FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCG 74
           DHGS +  RLYNPY++ +VP       ++LPTSPEFLF EEA RQRRSWGENLTFYTG  
Sbjct: 8   DHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTA 67

Query: 75  YLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVIGLLYAGLES 134
           YL G+VAGAS G ++GVKSFESGDT KL+INRILNSSG  GR WGNR+G+IGL+YAG+ES
Sbjct: 68  YLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIES 127

Query: 135 GFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVP 191
           G  A  D DDVW  V AGLGTGA+ RAARGVRSAAVAGA+GG+  G  V GKQ++KRYVP
Sbjct: 128 GIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVP 187

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BLAST of CmaCh17G007110 vs. ExPASy Swiss-Prot
Match: Q9LNQ1 (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana OX=3702 GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-63
Identity = 122/180 (67.78%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 15  DHGSSQ-PRLYNPYKDLQVPYRN---FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGY 74
           DH S +  RLY+PY++ QVP ++   ++LPTSPEFLF EE+ +QRRSWGENLTFYTG GY
Sbjct: 8   DHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTGY 67

Query: 75  LAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVIGLLYAGLESG 134
           LAG+VAGAS G  SG+KSFE+GDT KL+INRILNSSG  GR WGNR+G++GL+YAG+ESG
Sbjct: 68  LAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESG 127

Query: 135 FEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVPI 191
             AV D DDVW  V AGLGTGA++RAARGVRSAAVAGA GG+  G  V GKQ+ KRY  I
Sbjct: 128 VVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAHI 187

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BLAST of CmaCh17G007110 vs. ExPASy Swiss-Prot
Match: Q9S837 (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana OX=3702 GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.5e-45
Identity = 94/171 (54.97%), Postives = 126/171 (73.68%), Query Frame = 0


Query: 22  RLYNPYKDLQVPYRN-FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVAGAST 81
           R YNPY+ + +PYR  ++LPTSPEFLF+EEA ++R +WGENLTF+TG GY  G+V GA  
Sbjct: 18  RQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLGAFK 77

Query: 82  GFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVIGLLYAGLESGFEAVRDTDD- 141
           G ++G+++ E G+++K+R NRILNS G + R  GN LG +GL++A +ESG   +RD DD 
Sbjct: 78  GTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTYMRDGDDG 137

Query: 142 VWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVPI 191
               V AGL TG LYRAA G RSA VAGA+GGV    AV G++++KR+VPI
Sbjct: 138 SLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

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BLAST of CmaCh17G007110 vs. ExPASy Swiss-Prot
Match: Q9USM7 (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim23 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-13
Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = 0


Query: 56  RSWGENLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGN 115
           R W ++L + TG  YL+G   G   G   G+K  +   + +LR+N ILN     G   GN
Sbjct: 77  RGWQDDLCYGTGTSYLSGLAIGGLWGLNEGMKKTKDITSTRLRLNGILNGVTRRGPFVGN 136

Query: 116 RLGVIGLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVG 175
            LGV+ L+Y G+ S     R      N VAAG  TGALY++ RG+R+ A++ ++     G
Sbjct: 137 SLGVLALVYNGINSLIGYKRQKHGWENSVAAGALTGALYKSTRGLRAMAISSSLVATAAG 196

Query: 176 MAVTGKQ 183
           +    K+
Sbjct: 197 IWTLAKR 203

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BLAST of CmaCh17G007110 vs. ExPASy Swiss-Prot
Match: A4IFL0 (Mitochondrial import inner membrane translocase subunit Tim23 OS=Bos taurus OX=9913 GN=TIMM23 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.8e-10
Identity = 52/150 (34.67%), Postives = 71/150 (47.33%), Query Frame = 0


Query: 33  PYRN----FQLPTSPEFLFDEEARRQRRSWGENLTFYT--GCGYLAGAVAGASTGFVSGV 92
           PY N    + +  + EF+    A + R  +   L F+T  GC  + GA  GA  G   G+
Sbjct: 44  PYLNVDPRYLVQDTDEFILPTGANKTRGRF--ELAFFTIGGC-CMTGAAFGAMNGLRLGL 103

Query: 93  KSFESGDTMKLRINRILNSSGHLGRLWGNRLGVIGLLYAGLESGFEAVRDTDDVWNCVAA 152
           K  ++    K R  +ILN     G LW N LG + LLY+      E  R  +D  N VAA
Sbjct: 104 KETQNMAWSKPRNVQILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAA 163

Query: 153 GLGTGALYRAARGVRSAAVAGAIGGVVVGM 177
           G  TG LY+   G+R AA  G  G  + G+
Sbjct: 164 GTMTGMLYKCTGGLRGAARGGLAGLTLTGL 190

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BLAST of CmaCh17G007110 vs. ExPASy TrEMBL
Match: A0A6J1JPR4 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita maxima OX=3661 GN=LOC111488726 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.1e-102
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG
Sbjct: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

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BLAST of CmaCh17G007110 vs. ExPASy TrEMBL
Match: A0A6J1GQS1 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita moschata OX=3662 GN=LOC111456245 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.4e-99
Identity = 186/190 (97.89%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MADHSS RDTDSGFDH SSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADHSSNRDTDSGFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAV GASTGFVSGVKSFESGDTMKLRINRILNSSGH GRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG
Sbjct: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of CmaCh17G007110 vs. ExPASy TrEMBL
Match: A0A6J1KID3 (mitochondrial import inner membrane translocase subunit TIM23-1-like OS=Cucurbita maxima OX=3661 GN=LOC111494717 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.5e-96
Identity = 181/190 (95.26%), Postives = 183/190 (96.32%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MAD SS R+ DSGFD GSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADRSSDREIDSGFDQGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAV GASTGFVSGVKSFESGDTMKLRINRILNSSGH GRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVG+AVTG
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of CmaCh17G007110 vs. ExPASy TrEMBL
Match: A0A5D3BY19 (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001040 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 9.4e-96
Identity = 180/190 (94.74%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MA HSS RDTDS FDH SSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MAVHSSNRDTDSEFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAV GASTG VSGVKSFESGDTMKLRINRILNSSGH GRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGA+GGVVVG+AVTG
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGLAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of CmaCh17G007110 vs. ExPASy TrEMBL
Match: A0A1S3CGP4 (mitochondrial import inner membrane translocase subunit TIM23-1-like OS=Cucumis melo OX=3656 GN=LOC103500713 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 9.4e-96
Identity = 180/190 (94.74%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MA HSS RDTDS FDH SSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MAVHSSNRDTDSEFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAV GASTG VSGVKSFESGDTMKLRINRILNSSGH GRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGA+GGVVVG+AVTG
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGLAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of CmaCh17G007110 vs. NCBI nr
Match: XP_022992412.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG
Sbjct: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of CmaCh17G007110 vs. NCBI nr
Match: KAG6575462.1 (Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014007.1 Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.4 bits (960), Expect = 5.8e-100
Identity = 187/190 (98.42%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MADHSS RDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAV GASTGFVSGVKSFESGDTMKLRINRILNSSGH GRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG
Sbjct: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of CmaCh17G007110 vs. NCBI nr
Match: XP_022953829.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata] >XP_022953830.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata] >XP_023548834.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo] >XP_023548835.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.1 bits (954), Expect = 2.9e-99
Identity = 186/190 (97.89%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MADHSS RDTDSGFDH SSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADHSSNRDTDSGFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAV GASTGFVSGVKSFESGDTMKLRINRILNSSGH GRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG
Sbjct: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of CmaCh17G007110 vs. NCBI nr
Match: XP_038896585.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa hispida])

HSP 1 Score: 362.5 bits (929), Expect = 2.3e-96
Identity = 181/190 (95.26%), Postives = 184/190 (96.84%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MAD SS RD+DSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADRSSNRDSDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAV GASTG VSGVKSFESGDT+KLRINRILNSSGH GRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTLKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVG+AVTG
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of CmaCh17G007110 vs. NCBI nr
Match: XP_023000450.1 (mitochondrial import inner membrane translocase subunit TIM23-1-like [Cucurbita maxima])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 181/190 (95.26%), Postives = 183/190 (96.32%), Query Frame = 0


Query: 1   MADHSSKRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60
           MAD SS R+ DSGFD GSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE
Sbjct: 1   MADRSSDREIDSGFDQGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGE 60

Query: 61  NLTFYTGCGYLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVI 120
           NLTFYTGCGYLAGAV GASTGFVSGVKSFESGDTMKLRINRILNSSGH GRLWGNRLGVI
Sbjct: 61  NLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVI 120

Query: 121 GLLYAGLESGFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTG 180
           GLLYAGLESG EAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVG+AVTG
Sbjct: 121 GLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTG 180

Query: 181 KQMLKRYVPI 191
           KQMLKRYVPI
Sbjct: 181 KQMLKRYVPI 190

[Close]

BLAST of CmaCh17G007110 vs. TAIR 10
Match: AT1G72750.1 (translocase inner membrane subunit 23-2 )

HSP 1 Score: 248.8 bits (634), Expect = 3.4e-66
Identity = 126/181 (69.61%), Postives = 145/181 (80.11%), Query Frame = 0


Query: 15  DHGSSQ-PRLYNPYKDLQVPYRN----FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCG 74
           DHGS +  RLYNPY++ +VP       ++LPTSPEFLF EEA RQRRSWGENLTFYTG  
Sbjct: 8   DHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGTA 67

Query: 75  YLAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVIGLLYAGLES 134
           YL G+VAGAS G ++GVKSFESGDT KL+INRILNSSG  GR WGNR+G+IGL+YAG+ES
Sbjct: 68  YLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIES 127

Query: 135 GFEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVP 191
           G  A  D DDVW  V AGLGTGA+ RAARGVRSAAVAGA+GG+  G  V GKQ++KRYVP
Sbjct: 128 GIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYVP 187

[Close]

BLAST of CmaCh17G007110 vs. TAIR 10
Match: AT1G17530.1 (translocase of inner mitochondrial membrane 23 )

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-64
Identity = 122/180 (67.78%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 15  DHGSSQ-PRLYNPYKDLQVPYRN---FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGY 74
           DH S +  RLY+PY++ QVP ++   ++LPTSPEFLF EE+ +QRRSWGENLTFYTG GY
Sbjct: 8   DHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGTGY 67

Query: 75  LAGAVAGASTGFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVIGLLYAGLESG 134
           LAG+VAGAS G  SG+KSFE+GDT KL+INRILNSSG  GR WGNR+G++GL+YAG+ESG
Sbjct: 68  LAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIESG 127

Query: 135 FEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVPI 191
             AV D DDVW  V AGLGTGA++RAARGVRSAAVAGA GG+  G  V GKQ+ KRY  I
Sbjct: 128 VVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYAHI 187

[Close]

BLAST of CmaCh17G007110 vs. TAIR 10
Match: AT3G04800.1 (translocase inner membrane subunit 23-3 )

HSP 1 Score: 183.3 bits (464), Expect = 1.8e-46
Identity = 94/171 (54.97%), Postives = 126/171 (73.68%), Query Frame = 0


Query: 22  RLYNPYKDLQVPYRN-FQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVAGAST 81
           R YNPY+ + +PYR  ++LPTSPEFLF+EEA ++R +WGENLTF+TG GY  G+V GA  
Sbjct: 18  RQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTGWGYCTGSVLGAFK 77

Query: 82  GFVSGVKSFESGDTMKLRINRILNSSGHLGRLWGNRLGVIGLLYAGLESGFEAVRDTDD- 141
           G ++G+++ E G+++K+R NRILNS G + R  GN LG +GL++A +ESG   +RD DD 
Sbjct: 78  GTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAMESGVTYMRDGDDG 137

Query: 142 VWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGMAVTGKQMLKRYVPI 191
               V AGL TG LYRAA G RSA VAGA+GGV    AV G++++KR+VPI
Sbjct: 138 SLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFVPI 188

The following BLAST results are available for this feature:

BLAST of CmaCh17G007110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38820	4.8e-65	69.61	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
Q9LNQ1	1.6e-63	67.78	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
Q9S837	2.5e-45	54.97	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
Q9USM7	9.6e-13	35.43	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]
A4IFL0	5.8e-10	34.67	Mitochondrial import inner membrane translocase subunit Tim23 OS=Bos taurus OX=9...	[more]

BLAST of CmaCh17G007110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPR4	5.1e-102	100.00	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A6J1GQS1	1.4e-99	97.89	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A6J1KID3	5.5e-96	95.26	mitochondrial import inner membrane translocase subunit TIM23-1-like OS=Cucurbit...	[more]
A0A5D3BY19	9.4e-96	94.74	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Cucumis melo ...	[more]
A0A1S3CGP4	9.4e-96	94.74	mitochondrial import inner membrane translocase subunit TIM23-1-like OS=Cucumis ...	[more]

BLAST of CmaCh17G007110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992412.1	1.1e-101	100.00	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
KAG6575462.1	5.8e-100	98.42	Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurb...	[more]
XP_022953829.1	2.9e-99	97.89	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_038896585.1	2.3e-96	95.26	mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa ...	[more]
XP_023000450.1	1.1e-95	95.26	mitochondrial import inner membrane translocase subunit TIM23-1-like [Cucurbita ...	[more]

BLAST of CmaCh17G007110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72750.1	3.4e-66	69.61	translocase inner membrane subunit 23-2	[more]
AT1G17530.1	1.1e-64	67.78	translocase of inner mitochondrial membrane 23	[more]
AT3G04800.1	1.8e-46	54.97	translocase inner membrane subunit 23-3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 64..173 e-value: 4.6E-23 score: 81.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR15371:SF25	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-2-LIKE	coord: 16..190
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 16..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G007110.1	CmaCh17G007110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex
molecular_function	GO:0008320	protein transmembrane transporter activity