CmaCh16G012470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G012470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Vacuolar protein sorting-associated protein 35
Location	Cma_Chr16: 9424372 .. 9436768 (-)
RNA-Seq Expression	CmaCh16G012470
Synteny	CmaCh16G012470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTACGTTGCGAGGTTAACACCTGAAAGGCATTCGATTTCTTTTGGCTGACCCGAACGACATTTCAGGTGATCTTGGAAGCCATAGCTGGGTTCAGGTTGAATCGTATCGGAACTGATCTGCCGAGGAAGAATTGTGCAGAGAGGGACGAAAACGGCGACGAGAATGATCACTGACGGAGTTGAAGACGAAGAGAAGTGGCTTGCTGCTGGGATCGCCGGTCTCCAGCAGAATGCCTTCTACATGCACCGATCTCTGGTATTGCTATTCATTTCTTGCAAATTTTATTGTTTTCGTGTATAGTTCGTTCTTAAGGACTGTATAGATCAAGGAGGAATTCCTGGAAAAGCTCGAAATGGCTTGATTCAGAGATGGGGTTTTCCATTAGAACCCTAATTTCAGTTTGATGATGCCCCAGGACTCCAACAATCTCAAAGATGCCTTGAAGTATTCTGCGCAGATGCTGTCTGAGCTACGGACTTCGAAGCTTTCCCCTCATAAATACTACGACTTATGTGAGCTTTTTCTCTCGGGTAACTGTGTGTTGGCCTTTGGAATTCAAGAAATCAATGTAATTTGTGAGATTTTTATTTTTTACGTTTCCAGACATGCGAGCGTTTGACGAGTTGAGGAAGCTAGAAATTTTCTTTATGGAGGAGACGAAGCGGGGTTGCTCAATAATCGACTTGTACGAACTTGTGCAGCATGCTGGCAACATATTGCCCAGACTGTGAGTTATTTTTTTTTTTTTCCCTGAAACCTGATTTAGTGTTGCTGCAAACTAAGCTTTGATATTTCTCCTTCTCTTTGTACGATGGATGCGAGTTTCTTTAGAAATGACTATTAGGTTTTTCTGGCATGGTTATTGATGGATGTTATGTGAAAAGGAAAGCCAAAATTATTTGCCTTAATGCCATTGAAGCCAAAATTGCTTGTTTATGTTTCTGCCTCAGAAGAGTTTCCGAAATTACTTCCATTGTCTATAAACAAAACTTTAGTTAAAAAAAAGAAGAAAGACCTAGAGGCCAGGGGGATGATACACCCCTGTCAAGGAGAGGGATTAAAAGAAAGATCCTCAATAAGTTGATTGCAGAAGTAGCCCAGTAAAGAACTTCCTGGAAAGCACTCCAACTAGGTGGTTACTGAGGTAGGGGTTTTCCCTTCGTCCTACTTAGGTCTTCCCCTAGAGATCTCTCCTTTTGCGATCCTATCATTGGGAAGATTCGCAAGAGGCTCACCTTTTGTTAGAAGAGTCTCTTCTCCAAAGGGGAGACTCACTCTTATTCAATCTGTCATTAATGGTTGGTGCTATTCTTTCCTCAGTTTGAAAGGTAAAGATTTCCAAGAAGGTGAAGTTCTTTTTATGGTCGATTTTGCATGAAAGAGTTAACACCTTAGGTTGAATTTCGGTTAGAGGGTCCTTGGTGGTTGGGACGCATTGTTGTATTTTCTGCAGGAGAGCGACAAAGGTCCTGGATCATATCCTATGGAGTTGTGATTTTGCTCATGCAATCAAGTGCGATTTCTTTGAGGTGTTCGATTTTAGCTTTGTCCGCTCCCAGAGTTGTAGGGAGACAATTGAGGAGCTTATCCTCCATCTGCCCTTTTGTGATAAAGGGCGTTTTTTGTGGCAAGCTGGAGTACGTGCTATTTAGTGAGGGCTATGAGGCGAGAAAACAACAAAATCTTTAAAGGGGGTGAGAGTTCTTTAGCAATGTGTTGGTCTCTTGTTAGATTCTCTGGTGCTTTCTAGACCTCTATTTTCAGGCTCTTCTGCAATTATACACTAGGACTTATTTCTCTTGACGGGAGCCATTCTTGTAGTTTGACTACTTTTTCTGGGTTTTCCCTTTTGTATTTCCATATATTCTCTTATTTTTTTCTCAATGAAAGTTAAGTTTTTTTTACCATAAAAAAGGGTATTGTTTAAGATCTCAACAAGAGTTCTAGGAGAATTCTGGACAACAATCTTGGTTTTCTTGACTCGAGAATTTTTGGAAGCCAGCCACCGATATCTTTAGATAACATCAAGCCAGTACAAGTCTTGAAAAATGAAGTAGTATTTTTCGGCCAAGTCGCAATGAACGAACAAATAGTCAGTACCTAATTCAAGGTACAATTCAAACAAATCTAGGAGAGAGAGACTATAACGGGTGGGTTCTTCTTAAATCTTATCCTGGGTATTCAAGCTATTACAGGTCAATTACCAATAGGAAATATGTTATGGTTTTATCTTGCCGTACCACATTTTCTTTGCAAGTAATCTCTCCAATGTGGTGGTTGATGCATTTATAGGTAGAGTTTTGCAGATTTGAAGGAGAACCTTCCTACATAGTCAAGAGTCCCAAGACACTGTACTCTGTTTGATTAGTATTCTTACGCTCTAGCATACAAGCAAATCTGACCAATTTTATGGCTTTCCATAAAAAAGGTTTCTTCTGAGGTCAAAATCCCAAGTTTAGTGCCTTTTCTCAGCTCTCCAGAAATCTCATACTGGCTTTCTGTTTGTAATCGTGATGGCATGGAATGAGGGAAAGTTTGGCAGAGAGGTCGGGAAGGAACTGGGCCAATTATCTTCTTAACATTGGATCGCTGCTCATTTTGAAGTCTGAAAGATGCATGCACCCCACCGTTAGCTATGGAATTATTAATGAAATGCTTGTTCCAAATAAGTTATATAGTTTAATCTCAAAGAATTTCAAGCACCAAATGTACCAATGATATTTACTACTGATTGCCAATATAATCAACTGAACCTATGTTTAGTGATCAATGCTACACAAGTTTTAGTTCATGGTTTGACTCTTGTTTTCCTCATTGACTGGTTTGGAGTTCTCAAGTGATCAGGTTCAAAGATCTCTATGAGAAAGCCGAAGTTCACTTGAGTTATATTTATCATCAGTTTTTGGAAATGTATATTTTGTCTATTGAGCATTGCTGCTAATATATATGTTCTGTTTTGGAACATTTTCTTGATTTATGGAACTCTCCAGGTACCTTCTTTGTACTGTGGGATCGGTGTATATCAAGTCCAAGGAGGCTCCTGCAAAAGATATTCTTAAAGATCTGGTTGAGATGTGCCGCGGTATTCAGCATCCCTTACGTGGGTTATTTTTAAGGAGTTATCTTTCTCAAGTCAGTAGGGATAAGCTACCTGATATTGGTTCAGAATATGAAGGGTAAGGAATTCGAGTATTCATTGGCTTAAGATGATCAATAAGCCACTGGGTTAACTTAATTGGCAACATAAGGAATACGTGCTTAGCAATCAAATTTAAAAAAAACGGACTACACAATCTGCCCTTTTGTGAGAAAGGGTTGTTTTTGTGTCAGGCTGTGTGGTGCTATTTTTTTGGGGCCCGTGGGGCGAGAGAAGCAATATAAGCTTCAGTGGAGGGAGAACTTCGATAATGATGTTTGGCCTTTTGTTAGATTCTCTAGGTGTCGGTGTTGGTGTCTCGGCCTATTTGTAATTACTTGCCATGTCTTAATTTACTTGATTGGAGTCCTTTCTTGTAGTTAGCTCGTTTTTGTGGATTTTTTATTTCCCTTTTTTGTAAGCCTGCGTAATCTTTCATTTTTATCACAATGAATTTTAAATATGTCATAAAAAGAAAAGGTCTACACCATAGGATCAAATATTGATGATCCTGCCAAAGGTACTTCATCTCATAACTTAATGACCTTCATATTTTTTGGTCGAAAATGTAAATTCTTGATATTTAAGGGGGTAATATTTTCCAAAAGAAGTAATGAATATATAAGAATATGCAAATACTTCAAGAAGTTGAAGAGACTAGTTATCTATTTCTAATGATACATTGGTGTATATCAAAATATTCAAGACTAGTTATGTGTAATGATAACAAAAAAAATAATATGCATCACTAGCAGACGAACTTGTGTTTTTATTTTTGTCACAAAATGTGATTTATGATAGCGGCCTTTGCTTGATCCTTATTTTTGAACTAGAAAGCATTACAGGCATTTCTATTGAGTTAATCTGTGGATGTTTCCTTGATGCCCACAGAGATGCAGACACTGTGAACGATGCAGTTGAATTTGTACTCCAAAATTTCACAGAAATGAACAAACTTTGGGTACGAATGCAGCATCAGGTGGGTTCAGTCATCCGATATTGTCACCTACTCTCAGTTTGAACATGCATGGTACAAGGATGACTGCATGTCATGAGGGTACAAATAGTTCTTGAGTGCATGATTTATGATCATGCAGGTTATAATGCTTGTGAATCATTCATACTCTTAGCTGACCCTGTGTTGAGGCTTGCTGTCGGGCTTTCTGGTCTGCAGGGACCTGCCCGGGACAAGGAGAAACGGGAGAAGGAAAGGAGCGAGCTACGTGATCTTGTAACATCAGAATTCTGAGACTGGTTACTTTCACTAAAATGGCATTGTGTACATTCTCCATGTACGCTCATACAATTTTTGCCCTCCCTCTTCTTGTCATTAGGTTGGAAAGAATCTGCATATTCTCAGTCAGGTGGAGGGTGTTGACCTTGATATGTACAAGGATATTGTACTTCCTAGAGTCTTAGAGCAGGTGTTAATTGCTCAATTTTCTTTTACTATTTTTCGAGTCCCTCACTTTGTCATTGTCACTCTAATGATCATTCCTATGTTTCACAGGTTGTTAATTGTAAAGATGAAATTGCTCAATTTTATTTGATGGAATGCATTATTCAAGTATTTCCTGATGAGTATCACTTACAAACCCTGGATATTTTGTTGGGTGCCTGCCCCCAACTTCAGGTGAGTGGCAATACCATCACTTGTGTTACTGCTTAAAAATTCATTTTCTATGGTACTGCAAATGTTTTTAAGTTTTTTCCAGTACTGAATGATGAGCTTCATTTTCTAGACTTTTTATTTTGATGTAGTAGTTTTGTGGGCTATTTTACATGTATCATCTTGAGCTTATTTATTTAATTGTTTGTTTGATTCTCAAAAGTTGATGTGAGACTGGATGCCTATTTCATTGGGAGTTCCCAGGGAAGGCTTGTTTTCATGTTCATCTCCTCTTGTTTTTGGTTTTTTCCTTATCAATGTTCACAATTTTATTCTTACTCTCATCGTTGGGATGAGGCGCTTTAAGATCAAGTGTATTCTCTATACCGGTGCATCTTCAACTTTGTGTTGGGTGTTAGTTGGGTCTATCCATCAATGTTGTATCATCATGAATGCTATATGCAAAACGGCTTGGTTAGGTTTATGGGACATGCTTTGATTATTAGTTTCTCTCGGAATTGGGACAGTTACACAATGATTGAGGAGGTGCTCCTGAGCTTTCCTTCTCCGGAAAAGAGAGTTTTATGGCATGCTAGTTTCTTTGTTATTTTGTGGAGAGTTTGGTTGTTGAGAAACAATAAATTTTTTATAAGATTTTAGAGTGGTGGAGAGGTTGTGTGATTAGGTTTAATTGGGCCTTTGTAATTATGATCTTAGCTTGATTGCTTGGATGGGAGATCCTTATTGTAGCTTTTCTGCATCTCCCTTTTTGTTGAGCTTATTTTTTTGCATGCCCTTGTATATTCTTTCATCTCCTCAACGAAAGGTTGGTTTCTTACAAAAAAAGCAAAAATCTTGGTTTCTTTAATGCATAAATGGAGACTTTTCTTTATAACATATCTAATTGTGAGACGTTATTTGTAATGCATCTAATTTGTTGGATGTTTTGAGCCTCTTGGAAGGCATCGACATCCATCAACAAGCAGGTAGTTGTGCTACTAAGAGCACATTGAGGCATACTAAGGCATACCACAGATATTTAGGCATTGTTTAGAGCTAAGATTTAGATGGGCTTGTTCTTACTCAGTTATATTGAAAAGAAGCAACTCATTCAGCATTTGCATTTTACAAGTGCTTTATATTATTCTTATAATAGAAAATGTTGTTTGTTTCACTTTATATTTTTGGAAGTTATTTAGCCTTATACGTCCCTCTCATGATTTATATTTCTCAGCCATCTGTTGATATCAAGACTGTGTTGTCCCAATTAATGGAGAGGCTTTCAAATTATGCTGCTTCAAGTGCAGAAGTGTTACCAGAATTCTTGCAAGTCGAAGCTTTCTCAAAACTGAGCAAAGCCATTGGGAAGGTAATTTTTTTCTTTTAGCCTTAGAGATTCGTAGTGAGAAATTCTTTAGTTGAGTATACAACTAATTTCTGGAGTTGGGTTTCTTTTGACTAACAATTTGTTACTTTTTTCAACCTTTTATTTTTGGAAACAAAACAAATTTTTTTTTAATCAAAATAAACCAAACTCCAGACATTAGTTGTATACTCAACTAAAGGATTTATTTATTTCATCAATATTTTATATAAGAAACCAACTTTTGTTGAGAATTTTTTTCCCAAGATAGTTAACAATTTTTTTTTTCATAAAGTTGTGCTCCTCCCTTTTTATGAAGGATGGATTAAAGTTAGAAACCAAAGAAATCTCTTTTGAGGAATATATGTATTTGTTTCTTACAAAAAAAGAAAAAAAGAAAAAGATATTGGGCCATGACATCGACATCTTCTAGGTTGACTATTTAGTTGATATTTACTTTATTTCTTCTATATTTGATTTCATCAGTTTCTTTTGTTTTTTTTTCTTTCCTCTTTCAAATAAATTTTATTGTCATCTCTATCACTTAAGAGACATGTTTTTTGGTGGTCGTAAAATAGTATCATAAGTTTGTCTCTGAAAAATAGTCTATAGTTCATAATTTTCTTAAGATCACTTAATTAGTTAAATTTGATATATGTGAAATATTCACTTTGCAGGTGATAGAAGCACAGGCTGATATGCCTACAGTGGGAGTTGTAACTTTATACTCAGCACTTCTCACATTTACACTTCATGTTCATCCAGATCGTCTTGATTATGCAGATCTTGTTTTGGTAATATTTGATTGTTAAATATTTTGATATAAAGCCTGCTAATTTGTTAAAAAGATAATCGAAATTGCCACCCACTTCAAAATTGATCACAACTATTCTATATCAATCATCTGAATGTAGCTAAGGCAATGGATTAAAAAATAAATTTCTTTTTGAAGTTTTTAATCCATGTAATTCTAGGTAAGAAACTAGGGATCTGTTTAGAAGTTGGTTTGAAATCTTTTAGAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAGAAAACTAGTAAAAACATGCTGAAACAATTGTACTCGATAAGTTGCTTTCTATTAATTTATTAAAGTTACAGACTTGTATGTTTACAAATACAGTCACCTATCATCTCAACCTCATAAGCCTTTTGATCACACCTCTACAGAATGGCTGTTTGAAACTGTGCTGTAAAGTGAACGGCTAAACCCTGGATTTACTGGCAATCAAATTTCCCAGCTGAACTTTCTTGCAGGATGACTTTCATAATAATAAGTTAGGGTTATCATCTGTTTTTCAGGGAGCATGTGTGAAGAAACTCTCTGGTAAAGGGAAAATTGAAGACAGCAAGGCAACAAAGCAGATTGTTGCCCTTTTGAGTGCGCCATTGGAAAAATATAATGACATTGTCACTACATTGAAGCTATCAAACTATTCACATGTCTTGGAGTACCTTGATGGTGAAACGATCAAAGTGATGGCAACAGTTATTGTACAAAGCATAACAAAGAATAAAACTCAAATATCTACTGCCGAAAATGTACGAGCCCTTTTGTTGTTTTGTCCTTAATATTAATTATGCTTTCTAGTTATATGGATTACTTTTATGTAGGTTGAGGCATTATTTGAATTGATAAGAGGGCTTATCAAGGATTTAGATGGATCTCCTCCTGATGAGGTTCTCTTTCTCTCTCTTTACATTTTGGAAACCCTTGTTTCTTATAATGGTTTATACCTTTATTTACATAATCTTAGATCCTTTATCGATATCGTTCTTTTCTTTTTCTTAAATTTAAGCTTAAATGTTTCATGATGAGGTTGTTTTATCTATTCCTTTTTCCTCCTCCACTTCAATTCTTTAGGTTGATGAAGATGATTTCAAGGAGGAGCAAAGTTCTGTTGCTCGTCTTATTCAGATGTTGTATAATGATGACCCAGATGAAATGTTTAAGGTACTGGGGTGCTATAGATTATTTATACAAGTTTTATCTCATGGATATGTGAATGCATCTTCAATTTTATCTCTGGAAGGCATTTATAGAGCTTGATAAAAGGCAATGAACAGCTTTAGTTGAATACGGGATCAGTGTTCTATTAATTTTTTTTTTAATTTTTGAATGAGATATACTGCGTACTTGATTGGTATTGTCGAATCATTTGGGTAACGTATGAATGAAGCTTATATGGTGGTACCGTGCTTCCTACAGAATGAATTTCCTATATTGAAACAATTCTCTTGGCATTGTCAAAATGCAATCCTAATCTTTATCAACTGATCGAGGCATTTGATTTATTTATTTGTTTGGTGGCCATCCTAGCAATATTTCAATTTTGGTCATCTTCTATTGACTTTTCATTTGTCGTCTACTCTTTGAAGTTCATGACACTATTGTTTGGTTATATTGACGTGGCTTGATCGTCATCATGCCATCACTGGTGATGGTGGTCGTTCACTTTGTTACCTAGTTGCACTCCTTAGTTCCCCAGAAGTTTCAGTTATTTCTTAGAATTATTGTTGCCTTGGGAAGAGGTTTGGTCTTGTATCTAATTCACCCTTGGGCAATATTCATTGGACCGTTAGTCACATTACTTTGTAGTGTAGATGGTAGATAGATGGGTAAGTTCATCTAGTTGTTGTTTTGAGGTCCATTCTTTTGCTGATGACTTGTTATCGTCAATGGTAGTAGTAGTGTGGCTTTGGGGGCCACTTTGAGTTGACTGTGGGTCCATAGGGTATTATTTGGCTTGTCATCTTCTCTCATTAGAAACTGTGAGGGTGGATTTGACTTGATATCGATCCATTTATAAAATTCTATCCTGAGCACCAAACTAAGGTTGATGTCTAACTTCTACGTTTCACATCTTGAGCCAACTTACACTATGGGGTTGGCTAACCATTGGTAGCCGCCATCCACAGCTTGATGGATGCATCCTTCGGGATGAAGAAAAGCTGAATAATTGTTAGTAGGTGCATACTTTGTAAGACCATTTTAAGAGGGTGTTCTCTGGTTTCTTCTGGATGGGTGATGTTCACGAGGAAACCTAACCTGTACTGTACTCTAATTAATTGCAGATAATCTGTACTGTCAAGAAGCATATCCTGACTGGAGGAATAAAGCGTCTGCCATTTACCGTTCCTGCCCTTGTTTTTTCATCTCTCAAGGTTTGTCTCTCTTGATTTCTACTCTTTTGTCGATTCTTTTTTTATTCTTAAAATAACGTTTTATTGTTGCAACTTATAATTATGAGTTTATTGTAGTTACTGTGAGTATTAAAGCTTTTTCATAGTAGTTGGTGTCATAAACTTGTCCGTTTGAGCTACTGGAGTAAGTGGGTTTTTGTCCCGTCCAATATAGTGGAGGTTTTGAAGTGTTCGAGTATTGAAGACCTCATCCCTGACAATCACTAGATGTGAAGATGGAGAAGAAAATCGCTGGAGTGAATCATAAAAAGATTATTTATTTATGGGTTAAGTAGGAATGATTATGTCAGTGATGATTGCTATGGTCTCGTTAGGTGATATCATGTTATGGAAATGTAGTAACAGTGAATTGCTTATTAATTTCAGTTGGTTAGGCAATTGCAAGGCCAGGAAGAAAATCCTTTTGGAGATGAGACAGCAACTAACCCGAAGAAAATTTTTCAGCTATTAACTCAGGTACTACCTAAATGGAGTGGGAGATTGTATTCCTTGTGTAAGCATGGTGTCCATCCTTCAAGATTGTTTTAACTGCAATATATAGTCGGTTGCAATTGCAAATGTGTCTGCATTGTCAAATCGTGATTAACTTGGAGGTTCTTTTCTCTAAATATGTTTGTTCCTCTAGCTTGCTTTTCTGTGGCCCTAATATGTTACAGATGGATTATGCATGTTTCAAAGAACTTGTATAATCTTGTTCATATTGAATTGATTATTTGTAATGTTCCAATGTGTTGCCTCAGACCATTGAGAGCCTTTCAAGTGTTCCAGCCCCAGAATTGGCGTTTCGGTTGTATCTACAATGTGCTGAGGTATGCCAAGAAATCTGGTTTGTAATTTGGAATATTATGATATGTAGCTGTAATTTTTAATGCGCATTGTAATTGATCAGGCTGCAAATGATTGTGATTTAGAACCTGTTGCTTACGAATTTTTTACCCAAGCATACATTCTTTATGAAGAAGAAATTTCAGTAAGTTGGATCCTTTGTGCTCGTGTTAATTGTTTCTTCTCACTAAGGTTTGTCGCTTATAATGATGTCGTGCAACTTCTCTTTTACAGGATTCAAAAGCTCAAGTTACTGCATTACATTTAATAATAGGCACTCTTCAGAAGATGCACGTTTTTGGTGTTGAAAACAGGGATACTTTAACCCACAAAGCCACTGGGGTACTTTCTACAACAAAGTCCTGGCATTATATTGTTTGTATTTGACTATCGAATATGAATATGAATCTGCATCTAAATCTAATCTAATCGTACTATTACTTTTTAGTTTGGATACAAAAAATGCAGGACATGTCAGACATTTATTGGAATGTCAAGGATTAGAGAAGTAAATTAGAAAAAGAAAAAAGATAGAATGTTGCATTGTTTTGCAAGTGCGCTTTTTGTGCTTATGATTGCAAACCTTTCAAATGAAAATGCTTGTATGTCCATATGTTTACATACACTCAATTTTGACTCTTTATTTTCACGTCCTTTTCATGTTTATACTATATCTGTCTGCGAGATGGCATGTGAGCGGCTTCATAAATATGAATATTTTTTGGCGAAGACCCTAACAAAGCTACCTTATGGCACAGTACTCCGCAAAGCTTTTAAAAAAGTCTGATCAATGCCGAGCTGTTTATGCTTGCTCGCATCTCTTCTGGCTTGATGATCATGATAATATGAAGGATGGTGAGAGGTGAGTTACGAACTTAGAGCAAGTTTTTGTTAATGGTTTTATGCGTGTTTGTTGGTTGTGGATTTTATAGCTAGGCACTTCCTATAATGAACTTTCAAAATATTGAACTTTTTTTCTCCTGATGAACCAGGGTGATGCTTTGCCTAAAGCGTGCATTAAGAATAGCAAATGCTGCTCAGCAAATGTCGAATGCAACAAGGGGTAGCACCGGGCCAGTGTCGCTTTTCATTGAGATACTGAACAAGTAATTTCTGTATCCTCAGATTGTTCTGAGCCTTATAAAAGTGTGATTTTCTCCTGGTAGATGGATCATTTTTGTTTCGTTCGCTCGCAGATACTTGTATTTTTTCGAGAAGGGCAACCCGCAGATCACGGTAGCTACCATCCAGGGCCTAATTGAATTGATCACAACTGAAATGCAAAGCGACACTACTAGTCCAGATTCATCGGCAGATGCATTCTTTGCCAGCACTCTCCGGTACATTGAGTTCCAAAAGCAGAAAGGTGGTGCAGTGGGTGAGAAATACGAGCCCATAAAAGTGTAGCAACTTAAATTTGATTGTTGCCGAGATCGACGGCATTACGACCAGTTTCTCACCATATATATAGGTTGAGGGTTAATTCAGTCTGGTTTTTTTTATCTGAAGGAACCAGTTAGCTGGATTCTTTTCGTTCCGTTTCCAGTTAGCGTCTTGCTTCTTTGTTACACTAAATGTCCCAAGATTCTAGTTAAAGAGTAAAAGCTTCCTTGTTCTGTAGGATGTGAGACAATAGTAAGAAATGACTTTCATCACTTCTCTATTCTGTAATGTGAGACTGATACACACTTGGCGTGCTCGTCCGACCCGTCAAGGCATTTGTGCATATTTTTGAACTAAGCTTCGGTTTCGACTTCAGTCAACACTATAATAAATTCCAGACTGGTCTACGTTTTGGAAATCTTGCATTCCTGAAATTATAATGTCTTTTGATACACCATTATTGATGATGGTTTTCCCTGGAACTTACTTGCCTTTCCATTTGCAGTTGACTAGTCTTTGATGAGCTATGCCATCCATATTTGTCTTGAAATAGAGTTTTTTCGTTGGTCTTAGATTTAA

mRNA sequence

ATCTACGTTGCGAGGTTAACACCTGAAAGGCATTCGATTTCTTTTGGCTGACCCGAACGACATTTCAGGTGATCTTGGAAGCCATAGCTGGGTTCAGGTTGAATCGTATCGGAACTGATCTGCCGAGGAAGAATTGTGCAGAGAGGGACGAAAACGGCGACGAGAATGATCACTGACGGAGTTGAAGACGAAGAGAAGTGGCTTGCTGCTGGGATCGCCGGTCTCCAGCAGAATGCCTTCTACATGCACCGATCTCTGGACTCCAACAATCTCAAAGATGCCTTGAAGTATTCTGCGCAGATGCTGTCTGAGCTACGGACTTCGAAGCTTTCCCCTCATAAATACTACGACTTATACATGCGAGCGTTTGACGAGTTGAGGAAGCTAGAAATTTTCTTTATGGAGGAGACGAAGCGGGGTTGCTCAATAATCGACTTGTACGAACTTGTGCAGCATGCTGGCAACATATTGCCCAGACTGTACCTTCTTTGTACTGTGGGATCGGTGTATATCAAGTCCAAGGAGGCTCCTGCAAAAGATATTCTTAAAGATCTGGTTGAGATGTGCCGCGGTATTCAGCATCCCTTACGTGGGTTATTTTTAAGGAGTTATCTTTCTCAAGTCAGTAGGGATAAGCTACCTGATATTGGTTCAGAATATGAAGGAGATGCAGACACTGTGAACGATGCAGTTGAATTTGTACTCCAAAATTTCACAGAAATGAACAAACTTTGGGTACGAATGCAGCATCAGGGACCTGCCCGGGACAAGGAGAAACGGGAGAAGGAAAGGAGCGAGCTACGTGATCTTGTTGGAAAGAATCTGCATATTCTCAGTCAGGTGGAGGGTGTTGACCTTGATATGTACAAGGATATTGTACTTCCTAGAGTCTTAGAGCAGGTTGTTAATTGTAAAGATGAAATTGCTCAATTTTATTTGATGGAATGCATTATTCAAGTATTTCCTGATGAGTATCACTTACAAACCCTGGATATTTTGTTGGGTGCCTGCCCCCAACTTCAGCCATCTGTTGATATCAAGACTGTGTTGTCCCAATTAATGGAGAGGCTTTCAAATTATGCTGCTTCAAGTGCAGAAGTGTTACCAGAATTCTTGCAAGTCGAAGCTTTCTCAAAACTGAGCAAAGCCATTGGGAAGGTGATAGAAGCACAGGCTGATATGCCTACAGTGGGAGTTGTAACTTTATACTCAGCACTTCTCACATTTACACTTCATGTTCATCCAGATCGTCTTGATTATGCAGATCTTGTTTTGGGAGCATGTGTGAAGAAACTCTCTGGTAAAGGGAAAATTGAAGACAGCAAGGCAACAAAGCAGATTGTTGCCCTTTTGAGTGCGCCATTGGAAAAATATAATGACATTGTCACTACATTGAAGCTATCAAACTATTCACATGTCTTGGAGTACCTTGATGGTGAAACGATCAAAGTGATGGCAACAGTTATTGTACAAAGCATAACAAAGAATAAAACTCAAATATCTACTGCCGAAAATGTTGAGGCATTATTTGAATTGATAAGAGGGCTTATCAAGGATTTAGATGGATCTCCTCCTGATGAGGTTGATGAAGATGATTTCAAGGAGGAGCAAAGTTCTGTTGCTCGTCTTATTCAGATGTTGTATAATGATGACCCAGATGAAATGTTTAAGATAATCTGTACTGTCAAGAAGCATATCCTGACTGGAGGAATAAAGCGTCTGCCATTTACCGTTCCTGCCCTTGTTTTTTCATCTCTCAAGTTGGTTAGGCAATTGCAAGGCCAGGAAGAAAATCCTTTTGGAGATGAGACAGCAACTAACCCGAAGAAAATTTTTCAGCTATTAACTCAGACCATTGAGAGCCTTTCAAGTGTTCCAGCCCCAGAATTGGCGTTTCGGTTGTATCTACAATGTGCTGAGGCTGCAAATGATTGTGATTTAGAACCTGTTGCTTACGAATTTTTTACCCAAGCATACATTCTTTATGAAGAAGAAATTTCAGATTCAAAAGCTCAAGTTACTGCATTACATTTAATAATAGGCACTCTTCAGAAGATGCACGTTTTTGGTGTTGAAAACAGGGATACTTTAACCCACAAAGCCACTGGGTACTCCGCAAAGCTTTTAAAAAAGTCTGATCAATGCCGAGCTGTTTATGCTTGCTCGCATCTCTTCTGGCTTGATGATCATGATAATATGAAGGATGGTGAGAGGGTGATGCTTTGCCTAAAGCGTGCATTAAGAATAGCAAATGCTGCTCAGCAAATGTCGAATGCAACAAGGGGTAGCACCGGGCCAGTGTCGCTTTTCATTGAGATACTGAACAAATACTTGTATTTTTTCGAGAAGGGCAACCCGCAGATCACGGTAGCTACCATCCAGGGCCTAATTGAATTGATCACAACTGAAATGCAAAGCGACACTACTAGTCCAGATTCATCGGCAGATGCATTCTTTGCCAGCACTCTCCGGTACATTGAGTTCCAAAAGCAGAAAGGTGGTGCAGTGGGTGAGAAATACGAGCCCATAAAAATTTAA

Coding sequence (CDS)

ATGATCACTGACGGAGTTGAAGACGAAGAGAAGTGGCTTGCTGCTGGGATCGCCGGTCTCCAGCAGAATGCCTTCTACATGCACCGATCTCTGGACTCCAACAATCTCAAAGATGCCTTGAAGTATTCTGCGCAGATGCTGTCTGAGCTACGGACTTCGAAGCTTTCCCCTCATAAATACTACGACTTATACATGCGAGCGTTTGACGAGTTGAGGAAGCTAGAAATTTTCTTTATGGAGGAGACGAAGCGGGGTTGCTCAATAATCGACTTGTACGAACTTGTGCAGCATGCTGGCAACATATTGCCCAGACTGTACCTTCTTTGTACTGTGGGATCGGTGTATATCAAGTCCAAGGAGGCTCCTGCAAAAGATATTCTTAAAGATCTGGTTGAGATGTGCCGCGGTATTCAGCATCCCTTACGTGGGTTATTTTTAAGGAGTTATCTTTCTCAAGTCAGTAGGGATAAGCTACCTGATATTGGTTCAGAATATGAAGGAGATGCAGACACTGTGAACGATGCAGTTGAATTTGTACTCCAAAATTTCACAGAAATGAACAAACTTTGGGTACGAATGCAGCATCAGGGACCTGCCCGGGACAAGGAGAAACGGGAGAAGGAAAGGAGCGAGCTACGTGATCTTGTTGGAAAGAATCTGCATATTCTCAGTCAGGTGGAGGGTGTTGACCTTGATATGTACAAGGATATTGTACTTCCTAGAGTCTTAGAGCAGGTTGTTAATTGTAAAGATGAAATTGCTCAATTTTATTTGATGGAATGCATTATTCAAGTATTTCCTGATGAGTATCACTTACAAACCCTGGATATTTTGTTGGGTGCCTGCCCCCAACTTCAGCCATCTGTTGATATCAAGACTGTGTTGTCCCAATTAATGGAGAGGCTTTCAAATTATGCTGCTTCAAGTGCAGAAGTGTTACCAGAATTCTTGCAAGTCGAAGCTTTCTCAAAACTGAGCAAAGCCATTGGGAAGGTGATAGAAGCACAGGCTGATATGCCTACAGTGGGAGTTGTAACTTTATACTCAGCACTTCTCACATTTACACTTCATGTTCATCCAGATCGTCTTGATTATGCAGATCTTGTTTTGGGAGCATGTGTGAAGAAACTCTCTGGTAAAGGGAAAATTGAAGACAGCAAGGCAACAAAGCAGATTGTTGCCCTTTTGAGTGCGCCATTGGAAAAATATAATGACATTGTCACTACATTGAAGCTATCAAACTATTCACATGTCTTGGAGTACCTTGATGGTGAAACGATCAAAGTGATGGCAACAGTTATTGTACAAAGCATAACAAAGAATAAAACTCAAATATCTACTGCCGAAAATGTTGAGGCATTATTTGAATTGATAAGAGGGCTTATCAAGGATTTAGATGGATCTCCTCCTGATGAGGTTGATGAAGATGATTTCAAGGAGGAGCAAAGTTCTGTTGCTCGTCTTATTCAGATGTTGTATAATGATGACCCAGATGAAATGTTTAAGATAATCTGTACTGTCAAGAAGCATATCCTGACTGGAGGAATAAAGCGTCTGCCATTTACCGTTCCTGCCCTTGTTTTTTCATCTCTCAAGTTGGTTAGGCAATTGCAAGGCCAGGAAGAAAATCCTTTTGGAGATGAGACAGCAACTAACCCGAAGAAAATTTTTCAGCTATTAACTCAGACCATTGAGAGCCTTTCAAGTGTTCCAGCCCCAGAATTGGCGTTTCGGTTGTATCTACAATGTGCTGAGGCTGCAAATGATTGTGATTTAGAACCTGTTGCTTACGAATTTTTTACCCAAGCATACATTCTTTATGAAGAAGAAATTTCAGATTCAAAAGCTCAAGTTACTGCATTACATTTAATAATAGGCACTCTTCAGAAGATGCACGTTTTTGGTGTTGAAAACAGGGATACTTTAACCCACAAAGCCACTGGGTACTCCGCAAAGCTTTTAAAAAAGTCTGATCAATGCCGAGCTGTTTATGCTTGCTCGCATCTCTTCTGGCTTGATGATCATGATAATATGAAGGATGGTGAGAGGGTGATGCTTTGCCTAAAGCGTGCATTAAGAATAGCAAATGCTGCTCAGCAAATGTCGAATGCAACAAGGGGTAGCACCGGGCCAGTGTCGCTTTTCATTGAGATACTGAACAAATACTTGTATTTTTTCGAGAAGGGCAACCCGCAGATCACGGTAGCTACCATCCAGGGCCTAATTGAATTGATCACAACTGAAATGCAAAGCGACACTACTAGTCCAGATTCATCGGCAGATGCATTCTTTGCCAGCACTCTCCGGTACATTGAGTTCCAAAAGCAGAAAGGTGGTGCAGTGGGTGAGAAATACGAGCCCATAAAAATTTAA

Protein sequence

MITDGVEDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKYYDLYMRAFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVNDAVEFVLQNFTEMNKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLPRVLEQVVNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHPDRLDYADLVLGACVKKLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLEYLDGETIKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKEEQSSVARLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQEENPFGDETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSDQCRAVYACSHLFWLDDHDNMKDGERVMLCLKRALRIANAAQQMSNATRGSTGPVSLFIEILNKYLYFFEKGNPQITVATIQGLIELITTEMQSDTTSPDSSADAFFASTLRYIEFQKQKGGAVGEKYEPIKI

Homology

[Close]

BLAST of CmaCh16G012470 vs. ExPASy Swiss-Prot
Match: Q7X659 (Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana OX=3702 GN=VPS35A PE=1 SV=1)

HSP 1 Score: 1238.4 bits (3203), Expect = 0.0e+00
Identity = 617/790 (78.10%), Postives = 706/790 (89.37%), Query Frame = 0


Query: 1   MITDGVEDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKY 60
           MI DG EDEEKWLAAG A  +QNAFYM R++DSNNLKDALKYSAQMLSELRTSKLSPHKY
Sbjct: 1   MIADGSEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YDLYMRAFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120
           YDLYMRAFDELRKLEIFFMEET+RGCS+I+LYELVQHAGNILPRLYLLCT GSVYIK+KE
Sbjct: 61  YDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKE 120

Query: 121 APAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVNDAVEFVL 180
           APAK+ILKDLVEMCRGIQHPLRGLFLRSYL+Q+SRDKLPDIGSEYEGDADTV DAVEFVL
Sbjct: 121 APAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYEGDADTVIDAVEFVL 180

Query: 181 QNFTEMNKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLP 240
            NFTEMNKLWVRMQHQGPAR+KE+REKER ELRDLVGKNLH+LSQ+EGVDLDMY+D VLP
Sbjct: 181 LNFTEMNKLWVRMQHQGPAREKERREKERGELRDLVGKNLHVLSQLEGVDLDMYRDTVLP 240

Query: 241 RVLEQVVNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLME 300
           RVLEQ+VNC+DEIAQ+YL++CIIQVFPDEYHLQTLD+LLGACPQLQ SVDI TVLS+LME
Sbjct: 241 RVLEQIVNCRDEIAQYYLIDCIIQVFPDEYHLQTLDVLLGACPQLQASVDIMTVLSRLME 300

Query: 301 RLSNYAASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHP 360
           RLSNYAA +AEVLP FLQVEAFSKL+ AIGKVIEAQ DMP +  VTLYS+LL FTLHVHP
Sbjct: 301 RLSNYAALNAEVLPYFLQVEAFSKLNNAIGKVIEAQEDMPILSAVTLYSSLLKFTLHVHP 360

Query: 361 DRLDYADLVLGACVKKLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLE 420
           DRLDYAD VLG+CVK+LSGKGKI+D++ATK++V+LLSAPLEKYND+VT LKL+NY  V+E
Sbjct: 361 DRLDYADQVLGSCVKQLSGKGKIDDTRATKELVSLLSAPLEKYNDVVTALKLTNYPLVVE 420

Query: 421 YLDGETIKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKE 480
           YLD ET ++MATVIV+SI KN T I+TAE VEALFELI+G+I DLD     EVDEDDF+E
Sbjct: 421 YLDTETKRIMATVIVRSIMKNNTLITTAEKVEALFELIKGIINDLDEPQGLEVDEDDFQE 480

Query: 481 EQSSVARLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQ 540
           EQ+SVA LI MLYNDDP+EMFKI+  +KKH LTGG KRL FT+P LV S+LKL+R+L  +
Sbjct: 481 EQNSVALLIHMLYNDDPEEMFKIVNVLKKHFLTGGPKRLKFTIPPLVVSTLKLIRRLPVE 540

Query: 541 EENPFGDETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDLEPVAYEFF 600
            +NPFG E +    KIFQ L Q IE+L +VP+P+LAFRLYLQCAEAA+ CD EP+AYEFF
Sbjct: 541 GDNPFGKEASVTATKIFQFLNQIIEALPNVPSPDLAFRLYLQCAEAADKCDEEPIAYEFF 600

Query: 601 TQAYILYEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSDQC 660
           TQAYILYEEEISDSKAQVTAL LIIGTLQ+M VFGVENRDTLTHKATGY+AKLLKK DQC
Sbjct: 601 TQAYILYEEEISDSKAQVTALQLIIGTLQRMQVFGVENRDTLTHKATGYAAKLLKKPDQC 660

Query: 661 RAVYACSHLFWLDDHDNMKDGERVMLCLKRALRIANAAQQMSNATRGSTGPVSLFIEILN 720
           RAVYACSHLFWL+D + ++DGERV+LCLKRAL+IAN+AQQ++N  RGSTG V+LFIEILN
Sbjct: 661 RAVYACSHLFWLEDRETIQDGERVLLCLKRALKIANSAQQVANTARGSTGSVTLFIEILN 720

Query: 721 KYLYFFEKGNPQITVATIQGLIELITTEMQSDTTSPDSSADAFFASTLRYIEFQKQKGGA 780
           KYLYF+EKG PQITV +++ LI+LI  E   ++   D SA++FFA+TL ++EFQKQK GA
Sbjct: 721 KYLYFYEKGVPQITVESVESLIKLIKNE---ESMPSDPSAESFFATTLEFMEFQKQKEGA 780

Query: 781 VGEKYEPIKI 791
           +GE+Y+ IK+
Sbjct: 781 IGERYQAIKV 787

[Close]

BLAST of CmaCh16G012470 vs. ExPASy Swiss-Prot
Match: F4I0P8 (Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana OX=3702 GN=VPS35B PE=1 SV=1)

HSP 1 Score: 1189.9 bits (3077), Expect = 0.0e+00
Identity = 586/786 (74.55%), Postives = 697/786 (88.68%), Query Frame = 0


Query: 5   GVEDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKYYDLY 64
           GVEDE+KWLA GIAG+Q NAF+MHR+LD+NNL++ LKYSA MLSELRTSKLSP KYYDLY
Sbjct: 6   GVEDEDKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQKYYDLY 65

Query: 65  MRAFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAK 124
           MRAFD+LR+LEIFF +E++ G  ++DLYELVQHAGNILPR+YLLCTVGSVYIKSK+AP+K
Sbjct: 66  MRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSKQAPSK 125

Query: 125 DILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVNDAVEFVLQNFT 184
           D+LKDLVEMCRG+QHP+RGLFLRSYL+QVSRDKLP+IGS+YEGDA+TV DAVEFVLQNFT
Sbjct: 126 DVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYEGDANTVMDAVEFVLQNFT 185

Query: 185 EMNKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLPRVLE 244
           EMNKLWVR+QHQGP   +EK+EKER+ELRDLVGKNLH+L Q+EGVDL+MYK+ VLPRVLE
Sbjct: 186 EMNKLWVRIQHQGPGTVREKQEKERNELRDLVGKNLHVLGQIEGVDLEMYKETVLPRVLE 245

Query: 245 QVVNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLMERLSN 304
           QVVNCKD++AQ+YLMECIIQVFPDEYHLQTL+ LL AC QL P+VD K VL+QLM+RLSN
Sbjct: 246 QVVNCKDKLAQYYLMECIIQVFPDEYHLQTLETLLAACTQLMPTVDTKIVLTQLMDRLSN 305

Query: 305 YAASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHPDRLD 364
           YAASS +VL EFLQVEAF+KLS AIGKVI+ Q +MP VG +TL+ +LLTFTL VHPDRLD
Sbjct: 306 YAASSPDVLHEFLQVEAFAKLSNAIGKVIDTQLEMPIVGAMTLFVSLLTFTLRVHPDRLD 365

Query: 365 YADLVLGACVKKLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLEYLDG 424
           Y D VLGACV KLS   K+ED++A KQ+VALLSAPLEKY+DIVT L LSNY  V+++LD 
Sbjct: 366 YVDQVLGACVVKLSSVPKLEDARAMKQVVALLSAPLEKYSDIVTALTLSNYPRVMDHLDD 425

Query: 425 ETIKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKEEQSS 484
            T KVMA +I+QSI K  + ISTA+ VE LFELI+GLIKDLD +  +E+DE+DF+EEQ+S
Sbjct: 426 GTNKVMAMLIIQSIMKTDSCISTADKVEVLFELIKGLIKDLDETNAEELDEEDFQEEQNS 485

Query: 485 VARLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQEENP 544
           VARLI ML N++P+EM KIIC V++H++TGG +RLPFTVP LVFS+++LVRQL+ Q  + 
Sbjct: 486 VARLIHMLDNEEPEEMLKIICVVRRHLMTGGPRRLPFTVPPLVFSAVRLVRQLESQGGDI 545

Query: 545 FGDETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDLEPVAYEFFTQAY 604
            G+++AT P+KIFQ+L QTIE L+SVP PELA RLYLQCAEAA+DCDLEPVAYEFFTQA+
Sbjct: 546 AGEDSAT-PRKIFQILNQTIEVLTSVPCPELALRLYLQCAEAASDCDLEPVAYEFFTQAF 605

Query: 605 ILYEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSDQCRAVY 664
           +LYEEEI+DSKAQVTA+HLI+GTLQ+++VFGVENRDTLTHKATGYSA+LLKK DQCRAVY
Sbjct: 606 MLYEEEIADSKAQVTAIHLIVGTLQRINVFGVENRDTLTHKATGYSARLLKKPDQCRAVY 665

Query: 665 ACSHLFWLDDHDNMKDGERVMLCLKRALRIANAAQQMSNATRGSTGPVSLFIEILNKYLY 724
           ACSHLFW+DD D +KDGERV+LCL+RALRIANAAQQM++ATRGS+GPV+LF+EILNKY+Y
Sbjct: 666 ACSHLFWVDDPDGIKDGERVLLCLRRALRIANAAQQMASATRGSSGPVTLFVEILNKYIY 725

Query: 725 FFEKGNPQITVATIQGLIELITTEMQSDTTSPDSSADAFFASTLRYIEFQKQKGGAVGEK 784
           FFEKGNP IT + IQ LIELI  EMQSD  +    +D FF STLRYI+F KQKGG +GEK
Sbjct: 726 FFEKGNPHITPSDIQSLIELINNEMQSDNGNTTIHSDPFFTSTLRYIKFIKQKGGLMGEK 785

Query: 785 YEPIKI 791
           Y+PIK+
Sbjct: 786 YDPIKL 790

[Close]

BLAST of CmaCh16G012470 vs. ExPASy Swiss-Prot
Match: A8R7K9 (Vacuolar protein sorting-associated protein 35C OS=Arabidopsis thaliana OX=3702 GN=VPS35C PE=2 SV=1)

HSP 1 Score: 1143.3 bits (2956), Expect = 0.0e+00
Identity = 573/787 (72.81%), Postives = 674/787 (85.64%), Query Frame = 0


Query: 7   EDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKYYDLYMR 66
           +D+EKWLAA IA ++QNAFYM R++DSNNLKDALK+SAQMLSELRTSKLSPHKYY+LYMR
Sbjct: 4   DDDEKWLAAAIAAVKQNAFYMQRAIDSNNLKDALKFSAQMLSELRTSKLSPHKYYELYMR 63

Query: 67  AFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDI 126
            F+EL  LEIFF EET RGCSI +LYELVQHAGNILPRLYLLCT+GSVYIKSK+  A DI
Sbjct: 64  VFNELGTLEIFFKEETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKDVTATDI 123

Query: 127 LKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVNDAVEFVLQNFTEM 186
           LKDLVEMCR +QHPLRGLFLRSYL+QV+RDKLP IGS+ EGD D   +A+EFVLQNFTEM
Sbjct: 124 LKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIGSDLEGDGDAHMNALEFVLQNFTEM 183

Query: 187 NKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLPRVLEQV 246
           NKLWVRMQHQGP+R+KEKREKER+ELRDLVGKNLH+LSQ+EGVDL +Y+D VLPR+LEQV
Sbjct: 184 NKLWVRMQHQGPSREKEKREKERNELRDLVGKNLHVLSQLEGVDLGIYRDTVLPRILEQV 243

Query: 247 VNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLMERLSNYA 306
           VNCKDE+AQ YLM+CIIQVFPD++HLQTLD+LLGACPQLQPSVDIKTVLS LMERLSNYA
Sbjct: 244 VNCKDELAQCYLMDCIIQVFPDDFHLQTLDVLLGACPQLQPSVDIKTVLSGLMERLSNYA 303

Query: 307 ASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHPDRLDYA 366
           ASS E LP FLQVEAFSKL+ AIGKV+EAQAD+P    VTLY  LL FTLHV+ DRLDY 
Sbjct: 304 ASSVEALPNFLQVEAFSKLNYAIGKVVEAQADLPAAASVTLYLFLLKFTLHVYSDRLDYV 363

Query: 367 DLVLGACVKKLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLEYLDGET 426
           D VLG+CV +LS  GK+ D KA KQIVA LSAPLEKYN++VT LKL+NY  V+EYLD ET
Sbjct: 364 DQVLGSCVTQLSATGKLCDDKAAKQIVAFLSAPLEKYNNVVTILKLTNYPLVMEYLDRET 423

Query: 427 IKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKEEQSSVA 486
            K MA ++VQS+ KN T I+TA+ V+ALFEL +GL+KD DG+  DE+DE+DF+EEQ+ VA
Sbjct: 424 NKAMAIILVQSVFKNNTHIATADEVDALFELAKGLMKDFDGTIDDEIDEEDFQEEQNLVA 483

Query: 487 RLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQEENPFG 546
           RL+  LY DDP+EM KII TV+KHI+ GG KRLP T+P LVFS+LKL+R+L+G +ENPFG
Sbjct: 484 RLVNKLYIDDPEEMSKIIFTVRKHIVAGGPKRLPLTIPPLVFSALKLIRRLRGGDENPFG 543

Query: 547 DETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDLEPVAYEFFTQAYIL 606
           D+ +  PK+I QLL++T+E LS V AP+LA RLYLQCA+AAN+C+LE VAYEFFT+AY+L
Sbjct: 544 DDASATPKRILQLLSETVEVLSDVSAPDLALRLYLQCAQAANNCELETVAYEFFTKAYLL 603

Query: 607 YEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSDQCRAVYAC 666
           YEEEISDSKAQVTAL LIIGTLQ+M VF VENRDTLTHKATGYSA+LL+K DQCRAVY C
Sbjct: 604 YEEEISDSKAQVTALRLIIGTLQRMRVFNVENRDTLTHKATGYSARLLRKPDQCRAVYEC 663

Query: 667 SHLFWLDDHDNMKDGERVMLCLKRALRIANAAQQMSNATRG--STGPVSLFIEILNKYLY 726
           +HLFW D+ +N+KDGERV+LCLKRA RIA+A QQM+NA+RG  STG VSL++E+LNKYLY
Sbjct: 664 AHLFWADECENLKDGERVVLCLKRAQRIADAVQQMANASRGTSSTGSVSLYVELLNKYLY 723

Query: 727 FFEKGNPQITVATIQGLIELITTEMQSDTTSPDSSADAFFASTLRYIEFQK-QKGGAVGE 786
           F EKGN Q+T  TI+ L ELI    +S+T   +S A+ F  STLRYIEFQ+ Q+ G + E
Sbjct: 724 FLEKGNQQVTGDTIKSLAELI----KSETKKVESGAEPFINSTLRYIEFQRQQEDGGMNE 783

Query: 787 KYEPIKI 791
           KYE IK+
Sbjct: 784 KYEKIKM 786

[Close]

BLAST of CmaCh16G012470 vs. ExPASy Swiss-Prot
Match: Q9EQH3 (Vacuolar protein sorting-associated protein 35 OS=Mus musculus OX=10090 GN=Vps35 PE=1 SV=1)

HSP 1 Score: 636.7 bits (1641), Expect = 3.4e-181
Identity = 354/794 (44.58%), Postives = 509/794 (64.11%), Query Frame = 0


Query: 7   EDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKYYDLYMR 66
           +++EK L   I  ++  +F M R LD N L DALK+++ ML ELRTS LSP  YY+LYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 67  AFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDI 126
             DEL  LE++  +E  +G  + DLYELVQ+AGNI+PRLYLL TVG VY+KS     KDI
Sbjct: 70  ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDI 129

Query: 127 LKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEY-EGDADTVNDAVEFVLQNFTE 186
           LKDLVEMCRG+QHPLRGLFLR+YL Q +R+ LPD G    E     ++D+++FVL NF E
Sbjct: 130 LKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSMDFVLLNFAE 189

Query: 187 MNKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLPRVLEQ 246
           MNKLWVRMQHQG +RD+EKRE+ER ELR LVG NL  LSQ+EGV+++ YK IVL  +LEQ
Sbjct: 190 MNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGILEQ 249

Query: 247 VVNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLMERLSNY 306
           VVNC+D +AQ YLMECIIQVFPDE+HLQTL+  L AC +L  +V++K ++  L++RL+ +
Sbjct: 250 VVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALF 309

Query: 307 A-ASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHPDRLD 366
           A       +P   +++ F   S+ +  VI+++ DMP+  VV+L  +L+   +  +PDR+D
Sbjct: 310 AHREDGPGIP--AEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVD 369

Query: 367 YADLVLGACVK---KLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLEY 426
           Y D VL   V+   KL+ +     S  +K++  LL  P++ YN+I+T LKL ++  + EY
Sbjct: 370 YVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEY 429

Query: 427 LDGETIKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKEE 486
            D E+ K M+  ++ ++    T+I + + V+++  L+  LI+D    P ++ D +DF +E
Sbjct: 430 FDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDFADE 489

Query: 487 QSSVARLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQE 546
           QS V R I +L +DDPD+ + I+ T +KH   GG +R+ FT+P LVF++ +L    + +E
Sbjct: 490 QSLVGRFIHLLRSDDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLA--FRYKE 549

Query: 547 ENPFGDETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDL---EPVAYE 606
            +   D+     +KIF    QTI +L      EL  RL+LQ A AA +      E VAYE
Sbjct: 550 NSQMDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYE 609

Query: 607 FFTQAYILYEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSD 666
           F +QA+ LYE+EISDSKAQ+ A+ LIIGT ++M  F  EN + L  +    ++KLLKK D
Sbjct: 610 FMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPD 669

Query: 667 QCRAVYACSHLFWL-----DDHDNMKDGERVMLCLKRALRIANAAQQMSNATRGSTGPVS 726
           Q RAV  C+HLFW       + + +  G+RVM CLK+AL+IAN     S         V 
Sbjct: 670 QGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQ 729

Query: 727 LFIEILNKYLYFFEKGNPQITVATIQGLIELITTEMQS-DTTSPDSSADAFFASTLRYIE 786
           LFIEILN+Y+YF+EK N  +T+  +  LI+ I  ++ + +++      +  F +TL ++ 
Sbjct: 730 LFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLR 789

[Close]

BLAST of CmaCh16G012470 vs. ExPASy Swiss-Prot
Match: Q2HJG5 (Vacuolar protein sorting-associated protein 35 OS=Bos taurus OX=9913 GN=VPS35 PE=2 SV=1)

HSP 1 Score: 636.0 bits (1639), Expect = 5.8e-181
Identity = 354/794 (44.58%), Postives = 508/794 (63.98%), Query Frame = 0


Query: 7   EDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKYYDLYMR 66
           +++EK L   I  ++  +F M R LD N L DALK+++ ML ELRTS LSP  YY+LYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 67  AFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDI 126
             DEL  LE++  +E  +G  + DLYELVQ+AGNI+PRLYLL TVG VY+KS     KDI
Sbjct: 70  ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDI 129

Query: 127 LKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEY-EGDADTVNDAVEFVLQNFTE 186
           LKDLVEMCRG+QHPLRGLFLR+YL Q +R+ LPD G    E     ++D+++FVL NF E
Sbjct: 130 LKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSMDFVLLNFAE 189

Query: 187 MNKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLPRVLEQ 246
           MNKLWVRMQHQG +RD+EKRE+ER ELR LVG NL  LSQ+EGV+++ YK IVL  +LEQ
Sbjct: 190 MNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGILEQ 249

Query: 247 VVNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLMERLSNY 306
           VVNC+D +AQ YLMECIIQVFPDE+HLQTL+  L AC +L  +V++K ++  L++RL+ +
Sbjct: 250 VVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALF 309

Query: 307 A-ASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHPDRLD 366
           A       +P    ++ F   S+ +  VI+++ DMP+  VV+L  +L+   +  +PDR+D
Sbjct: 310 AHREDGPGIP--TDIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVD 369

Query: 367 YADLVLGACVK---KLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLEY 426
           Y D VL   V+   KL+ +     S  +K++  LL  P++ YN+I+T LKL ++  + EY
Sbjct: 370 YVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEY 429

Query: 427 LDGETIKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKEE 486
            D E+ K M+  ++ ++    T+I + + V+++  L+  LI+D    P +E D +DF +E
Sbjct: 430 FDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEEPDPEDFADE 489

Query: 487 QSSVARLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQE 546
           QS V R I +L ++DPD+ + I+ T +KH   GG +R+ FT+P LVF++ +L    + +E
Sbjct: 490 QSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLA--FRYKE 549

Query: 547 ENPFGDETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDL---EPVAYE 606
            +   D+     +KIF    QTI +L      EL  RL+LQ A AA +      E VAYE
Sbjct: 550 NSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYE 609

Query: 607 FFTQAYILYEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSD 666
           F +QA+ LYE+EISDSKAQ+ A+ LIIGT ++M  F  EN + L  +    ++KLLKK D
Sbjct: 610 FMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPD 669

Query: 667 QCRAVYACSHLFWL-----DDHDNMKDGERVMLCLKRALRIANAAQQMSNATRGSTGPVS 726
           Q RAV  C+HLFW       + + +  G+RVM CLK+AL+IAN     S         V 
Sbjct: 670 QGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSL-------QVQ 729

Query: 727 LFIEILNKYLYFFEKGNPQITVATIQGLIELITTEMQS-DTTSPDSSADAFFASTLRYIE 786
           LFIEILN+Y+YF+EK N  +T+  +  LI+ I  ++ + +++      +  F +TL ++ 
Sbjct: 730 LFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLR 789

[Close]

BLAST of CmaCh16G012470 vs. TAIR 10
Match: AT2G17790.1 (VPS35 homolog A )

HSP 1 Score: 1238.4 bits (3203), Expect = 0.0e+00
Identity = 617/790 (78.10%), Postives = 706/790 (89.37%), Query Frame = 0


Query: 1   MITDGVEDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKY 60
           MI DG EDEEKWLAAG A  +QNAFYM R++DSNNLKDALKYSAQMLSELRTSKLSPHKY
Sbjct: 1   MIADGSEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YDLYMRAFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120
           YDLYMRAFDELRKLEIFFMEET+RGCS+I+LYELVQHAGNILPRLYLLCT GSVYIK+KE
Sbjct: 61  YDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKE 120

Query: 121 APAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVNDAVEFVL 180
           APAK+ILKDLVEMCRGIQHPLRGLFLRSYL+Q+SRDKLPDIGSEYEGDADTV DAVEFVL
Sbjct: 121 APAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYEGDADTVIDAVEFVL 180

Query: 181 QNFTEMNKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLP 240
            NFTEMNKLWVRMQHQGPAR+KE+REKER ELRDLVGKNLH+LSQ+EGVDLDMY+D VLP
Sbjct: 181 LNFTEMNKLWVRMQHQGPAREKERREKERGELRDLVGKNLHVLSQLEGVDLDMYRDTVLP 240

Query: 241 RVLEQVVNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLME 300
           RVLEQ+VNC+DEIAQ+YL++CIIQVFPDEYHLQTLD+LLGACPQLQ SVDI TVLS+LME
Sbjct: 241 RVLEQIVNCRDEIAQYYLIDCIIQVFPDEYHLQTLDVLLGACPQLQASVDIMTVLSRLME 300

Query: 301 RLSNYAASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHP 360
           RLSNYAA +AEVLP FLQVEAFSKL+ AIGKVIEAQ DMP +  VTLYS+LL FTLHVHP
Sbjct: 301 RLSNYAALNAEVLPYFLQVEAFSKLNNAIGKVIEAQEDMPILSAVTLYSSLLKFTLHVHP 360

Query: 361 DRLDYADLVLGACVKKLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLE 420
           DRLDYAD VLG+CVK+LSGKGKI+D++ATK++V+LLSAPLEKYND+VT LKL+NY  V+E
Sbjct: 361 DRLDYADQVLGSCVKQLSGKGKIDDTRATKELVSLLSAPLEKYNDVVTALKLTNYPLVVE 420

Query: 421 YLDGETIKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKE 480
           YLD ET ++MATVIV+SI KN T I+TAE VEALFELI+G+I DLD     EVDEDDF+E
Sbjct: 421 YLDTETKRIMATVIVRSIMKNNTLITTAEKVEALFELIKGIINDLDEPQGLEVDEDDFQE 480

Query: 481 EQSSVARLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQ 540
           EQ+SVA LI MLYNDDP+EMFKI+  +KKH LTGG KRL FT+P LV S+LKL+R+L  +
Sbjct: 481 EQNSVALLIHMLYNDDPEEMFKIVNVLKKHFLTGGPKRLKFTIPPLVVSTLKLIRRLPVE 540

Query: 541 EENPFGDETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDLEPVAYEFF 600
            +NPFG E +    KIFQ L Q IE+L +VP+P+LAFRLYLQCAEAA+ CD EP+AYEFF
Sbjct: 541 GDNPFGKEASVTATKIFQFLNQIIEALPNVPSPDLAFRLYLQCAEAADKCDEEPIAYEFF 600

Query: 601 TQAYILYEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSDQC 660
           TQAYILYEEEISDSKAQVTAL LIIGTLQ+M VFGVENRDTLTHKATGY+AKLLKK DQC
Sbjct: 601 TQAYILYEEEISDSKAQVTALQLIIGTLQRMQVFGVENRDTLTHKATGYAAKLLKKPDQC 660

Query: 661 RAVYACSHLFWLDDHDNMKDGERVMLCLKRALRIANAAQQMSNATRGSTGPVSLFIEILN 720
           RAVYACSHLFWL+D + ++DGERV+LCLKRAL+IAN+AQQ++N  RGSTG V+LFIEILN
Sbjct: 661 RAVYACSHLFWLEDRETIQDGERVLLCLKRALKIANSAQQVANTARGSTGSVTLFIEILN 720

Query: 721 KYLYFFEKGNPQITVATIQGLIELITTEMQSDTTSPDSSADAFFASTLRYIEFQKQKGGA 780
           KYLYF+EKG PQITV +++ LI+LI  E   ++   D SA++FFA+TL ++EFQKQK GA
Sbjct: 721 KYLYFYEKGVPQITVESVESLIKLIKNE---ESMPSDPSAESFFATTLEFMEFQKQKEGA 780

Query: 781 VGEKYEPIKI 791
           +GE+Y+ IK+
Sbjct: 781 IGERYQAIKV 787

[Close]

BLAST of CmaCh16G012470 vs. TAIR 10
Match: AT1G75850.1 (VPS35 homolog B )

HSP 1 Score: 1189.9 bits (3077), Expect = 0.0e+00
Identity = 586/786 (74.55%), Postives = 697/786 (88.68%), Query Frame = 0


Query: 5   GVEDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKYYDLY 64
           GVEDE+KWLA GIAG+Q NAF+MHR+LD+NNL++ LKYSA MLSELRTSKLSP KYYDLY
Sbjct: 6   GVEDEDKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQKYYDLY 65

Query: 65  MRAFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAK 124
           MRAFD+LR+LEIFF +E++ G  ++DLYELVQHAGNILPR+YLLCTVGSVYIKSK+AP+K
Sbjct: 66  MRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSKQAPSK 125

Query: 125 DILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVNDAVEFVLQNFT 184
           D+LKDLVEMCRG+QHP+RGLFLRSYL+QVSRDKLP+IGS+YEGDA+TV DAVEFVLQNFT
Sbjct: 126 DVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYEGDANTVMDAVEFVLQNFT 185

Query: 185 EMNKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLPRVLE 244
           EMNKLWVR+QHQGP   +EK+EKER+ELRDLVGKNLH+L Q+EGVDL+MYK+ VLPRVLE
Sbjct: 186 EMNKLWVRIQHQGPGTVREKQEKERNELRDLVGKNLHVLGQIEGVDLEMYKETVLPRVLE 245

Query: 245 QVVNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLMERLSN 304
           QVVNCKD++AQ+YLMECIIQVFPDEYHLQTL+ LL AC QL P+VD K VL+QLM+RLSN
Sbjct: 246 QVVNCKDKLAQYYLMECIIQVFPDEYHLQTLETLLAACTQLMPTVDTKIVLTQLMDRLSN 305

Query: 305 YAASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHPDRLD 364
           YAASS +VL EFLQVEAF+KLS AIGKVI+ Q +MP VG +TL+ +LLTFTL VHPDRLD
Sbjct: 306 YAASSPDVLHEFLQVEAFAKLSNAIGKVIDTQLEMPIVGAMTLFVSLLTFTLRVHPDRLD 365

Query: 365 YADLVLGACVKKLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLEYLDG 424
           Y D VLGACV KLS   K+ED++A KQ+VALLSAPLEKY+DIVT L LSNY  V+++LD 
Sbjct: 366 YVDQVLGACVVKLSSVPKLEDARAMKQVVALLSAPLEKYSDIVTALTLSNYPRVMDHLDD 425

Query: 425 ETIKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKEEQSS 484
            T KVMA +I+QSI K  + ISTA+ VE LFELI+GLIKDLD +  +E+DE+DF+EEQ+S
Sbjct: 426 GTNKVMAMLIIQSIMKTDSCISTADKVEVLFELIKGLIKDLDETNAEELDEEDFQEEQNS 485

Query: 485 VARLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQEENP 544
           VARLI ML N++P+EM KIIC V++H++TGG +RLPFTVP LVFS+++LVRQL+ Q  + 
Sbjct: 486 VARLIHMLDNEEPEEMLKIICVVRRHLMTGGPRRLPFTVPPLVFSAVRLVRQLESQGGDI 545

Query: 545 FGDETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDLEPVAYEFFTQAY 604
            G+++AT P+KIFQ+L QTIE L+SVP PELA RLYLQCAEAA+DCDLEPVAYEFFTQA+
Sbjct: 546 AGEDSAT-PRKIFQILNQTIEVLTSVPCPELALRLYLQCAEAASDCDLEPVAYEFFTQAF 605

Query: 605 ILYEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSDQCRAVY 664
           +LYEEEI+DSKAQVTA+HLI+GTLQ+++VFGVENRDTLTHKATGYSA+LLKK DQCRAVY
Sbjct: 606 MLYEEEIADSKAQVTAIHLIVGTLQRINVFGVENRDTLTHKATGYSARLLKKPDQCRAVY 665

Query: 665 ACSHLFWLDDHDNMKDGERVMLCLKRALRIANAAQQMSNATRGSTGPVSLFIEILNKYLY 724
           ACSHLFW+DD D +KDGERV+LCL+RALRIANAAQQM++ATRGS+GPV+LF+EILNKY+Y
Sbjct: 666 ACSHLFWVDDPDGIKDGERVLLCLRRALRIANAAQQMASATRGSSGPVTLFVEILNKYIY 725

Query: 725 FFEKGNPQITVATIQGLIELITTEMQSDTTSPDSSADAFFASTLRYIEFQKQKGGAVGEK 784
           FFEKGNP IT + IQ LIELI  EMQSD  +    +D FF STLRYI+F KQKGG +GEK
Sbjct: 726 FFEKGNPHITPSDIQSLIELINNEMQSDNGNTTIHSDPFFTSTLRYIKFIKQKGGLMGEK 785

Query: 785 YEPIKI 791
           Y+PIK+
Sbjct: 786 YDPIKL 790

[Close]

BLAST of CmaCh16G012470 vs. TAIR 10
Match: AT3G51310.1 (VPS35 homolog C )

HSP 1 Score: 1143.3 bits (2956), Expect = 0.0e+00
Identity = 573/787 (72.81%), Postives = 674/787 (85.64%), Query Frame = 0


Query: 7   EDEEKWLAAGIAGLQQNAFYMHRSLDSNNLKDALKYSAQMLSELRTSKLSPHKYYDLYMR 66
           +D+EKWLAA IA ++QNAFYM R++DSNNLKDALK+SAQMLSELRTSKLSPHKYY+LYMR
Sbjct: 4   DDDEKWLAAAIAAVKQNAFYMQRAIDSNNLKDALKFSAQMLSELRTSKLSPHKYYELYMR 63

Query: 67  AFDELRKLEIFFMEETKRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDI 126
            F+EL  LEIFF EET RGCSI +LYELVQHAGNILPRLYLLCT+GSVYIKSK+  A DI
Sbjct: 64  VFNELGTLEIFFKEETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKDVTATDI 123

Query: 127 LKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVNDAVEFVLQNFTEM 186
           LKDLVEMCR +QHPLRGLFLRSYL+QV+RDKLP IGS+ EGD D   +A+EFVLQNFTEM
Sbjct: 124 LKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIGSDLEGDGDAHMNALEFVLQNFTEM 183

Query: 187 NKLWVRMQHQGPARDKEKREKERSELRDLVGKNLHILSQVEGVDLDMYKDIVLPRVLEQV 246
           NKLWVRMQHQGP+R+KEKREKER+ELRDLVGKNLH+LSQ+EGVDL +Y+D VLPR+LEQV
Sbjct: 184 NKLWVRMQHQGPSREKEKREKERNELRDLVGKNLHVLSQLEGVDLGIYRDTVLPRILEQV 243

Query: 247 VNCKDEIAQFYLMECIIQVFPDEYHLQTLDILLGACPQLQPSVDIKTVLSQLMERLSNYA 306
           VNCKDE+AQ YLM+CIIQVFPD++HLQTLD+LLGACPQLQPSVDIKTVLS LMERLSNYA
Sbjct: 244 VNCKDELAQCYLMDCIIQVFPDDFHLQTLDVLLGACPQLQPSVDIKTVLSGLMERLSNYA 303

Query: 307 ASSAEVLPEFLQVEAFSKLSKAIGKVIEAQADMPTVGVVTLYSALLTFTLHVHPDRLDYA 366
           ASS E LP FLQVEAFSKL+ AIGKV+EAQAD+P    VTLY  LL FTLHV+ DRLDY 
Sbjct: 304 ASSVEALPNFLQVEAFSKLNYAIGKVVEAQADLPAAASVTLYLFLLKFTLHVYSDRLDYV 363

Query: 367 DLVLGACVKKLSGKGKIEDSKATKQIVALLSAPLEKYNDIVTTLKLSNYSHVLEYLDGET 426
           D VLG+CV +LS  GK+ D KA KQIVA LSAPLEKYN++VT LKL+NY  V+EYLD ET
Sbjct: 364 DQVLGSCVTQLSATGKLCDDKAAKQIVAFLSAPLEKYNNVVTILKLTNYPLVMEYLDRET 423

Query: 427 IKVMATVIVQSITKNKTQISTAENVEALFELIRGLIKDLDGSPPDEVDEDDFKEEQSSVA 486
            K MA ++VQS+ KN T I+TA+ V+ALFEL +GL+KD DG+  DE+DE+DF+EEQ+ VA
Sbjct: 424 NKAMAIILVQSVFKNNTHIATADEVDALFELAKGLMKDFDGTIDDEIDEEDFQEEQNLVA 483

Query: 487 RLIQMLYNDDPDEMFKIICTVKKHILTGGIKRLPFTVPALVFSSLKLVRQLQGQEENPFG 546
           RL+  LY DDP+EM KII TV+KHI+ GG KRLP T+P LVFS+LKL+R+L+G +ENPFG
Sbjct: 484 RLVNKLYIDDPEEMSKIIFTVRKHIVAGGPKRLPLTIPPLVFSALKLIRRLRGGDENPFG 543

Query: 547 DETATNPKKIFQLLTQTIESLSSVPAPELAFRLYLQCAEAANDCDLEPVAYEFFTQAYIL 606
           D+ +  PK+I QLL++T+E LS V AP+LA RLYLQCA+AAN+C+LE VAYEFFT+AY+L
Sbjct: 544 DDASATPKRILQLLSETVEVLSDVSAPDLALRLYLQCAQAANNCELETVAYEFFTKAYLL 603

Query: 607 YEEEISDSKAQVTALHLIIGTLQKMHVFGVENRDTLTHKATGYSAKLLKKSDQCRAVYAC 666
           YEEEISDSKAQVTAL LIIGTLQ+M VF VENRDTLTHKATGYSA+LL+K DQCRAVY C
Sbjct: 604 YEEEISDSKAQVTALRLIIGTLQRMRVFNVENRDTLTHKATGYSARLLRKPDQCRAVYEC 663

Query: 667 SHLFWLDDHDNMKDGERVMLCLKRALRIANAAQQMSNATRG--STGPVSLFIEILNKYLY 726
           +HLFW D+ +N+KDGERV+LCLKRA RIA+A QQM+NA+RG  STG VSL++E+LNKYLY
Sbjct: 664 AHLFWADECENLKDGERVVLCLKRAQRIADAVQQMANASRGTSSTGSVSLYVELLNKYLY 723

Query: 727 FFEKGNPQITVATIQGLIELITTEMQSDTTSPDSSADAFFASTLRYIEFQK-QKGGAVGE 786
           F EKGN Q+T  TI+ L ELI    +S+T   +S A+ F  STLRYIEFQ+ Q+ G + E
Sbjct: 724 FLEKGNQQVTGDTIKSLAELI----KSETKKVESGAEPFINSTLRYIEFQRQQEDGGMNE 783

Query: 787 KYEPIKI 791
           KYE IK+
Sbjct: 784 KYEKIKM 786

The following BLAST results are available for this feature:

BLAST of CmaCh16G012470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X659	0.0e+00	78.10	Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana OX=3702 ...	[more]
F4I0P8	0.0e+00	74.55	Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana OX=3702 ...	[more]
A8R7K9	0.0e+00	72.81	Vacuolar protein sorting-associated protein 35C OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9EQH3	3.4e-181	44.58	Vacuolar protein sorting-associated protein 35 OS=Mus musculus OX=10090 GN=Vps35...	[more]
Q2HJG5	5.8e-181	44.58	Vacuolar protein sorting-associated protein 35 OS=Bos taurus OX=9913 GN=VPS35 PE...	[more]

BLAST of CmaCh16G012470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17790.1	0.0e+00	78.10	VPS35 homolog A	[more]
AT1G75850.1	0.0e+00	74.55	VPS35 homolog B	[more]
AT3G51310.1	0.0e+00	72.81	VPS35 homolog C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042491	Vacuolar protein sorting-associated protein 35, C-terminal	GENE3D	1.25.40.660		coord: 466..775 e-value: 1.2E-113 score: 381.3
IPR005378	Vacuolar protein sorting-associated protein 35	PIRSF	PIRSF009375	Retromer_Vps35	coord: 2..790 e-value: 7.6E-287 score: 952.0
IPR005378	Vacuolar protein sorting-associated protein 35	PFAM	PF03635	Vps35	coord: 12..747 e-value: 5.2E-277 score: 921.2
IPR005378	Vacuolar protein sorting-associated protein 35	PANTHER	PTHR11099	VACUOLAR SORTING PROTEIN 35	coord: 2..790
None	No IPR available	PANTHER	PTHR11099:SF3	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A	coord: 2..790
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 108..636

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012470.1	CmaCh16G012470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0042147	retrograde transport, endosome to Golgi
biological_process	GO:0015031	protein transport
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005770	late endosome
cellular_component	GO:0030906	retromer, cargo-selective complex