CmaCh16G011770 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G011770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionbinding partner of ACD11 1-like
LocationCma_Chr16: 9011699 .. 9014615 (+)
RNA-Seq ExpressionCmaCh16G011770
SyntenyCmaCh16G011770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATTTCATCAGAGGCGACGAAGACTTGGACACACTGAGGGGAAATCCTAAATTCAGAATCAAGCTTATCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAGTACTTCGTGAATTTCCTTCTCTTTTCATCGCGTTTGAAGATTCTGATTGCGAAGTGGAAAATCGTTGGGGAAGGATTCCATTGGGTTAGATTTGGACCCTTACTCTGTAGTTTTTCTTTGGAGTTATTACAAATTAGTGCAATGTGCAGCCAAGGGATTAGATCTCTTGTGGTTTATTTTCCCGTTTGATTTTCCCATTTGAGGGTTTTGTATCATGTCGAGATTTTCCCATTCAGTGTATCAAGAATTAGGATTATGTTTAAGCAAATTGGTCCATTTCTATGTTTTGATCGATGAAATGTATTTTGAATCTGTTCCACGTTCGTTCCTCCTACTGAACCTGGACCTGCATAGAAACATACATTCGAAATTAAAACCTGGAACGTCATTCCTGTAATTAATACTTCGAAGTGTGTAATCTTCGCTCCCTTTGGATTACTATTGCTGCTTGGCTTGTTGATGTCCATCGTTTTCTTGGCTGCACCCATGAGATTTTCCTTTTTGCTTTTCATTTCTTTTCTGGCCATAGCTGATTTTTTTTACTCTCTTTCTGACTTATGTTGATCACTGTTCAGCTGTAGCAATGAATTTATGCACCTTCTTGGAGATAGTGGGAGATTTCTTGATCTTTGTTTGAACTGCTTTGTTCTGTATGTGCAGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGTGACATTGCATATGTTGAAATGCAGAGGTTATGCAGGTTTTCGTTTCAGTTTATGATATATCTTCTTTTCGTTCAATGTTTTTATTCTTTTGCAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATGCACAAGGAGCAGAGACTGCCACTCTTTTGTCTGTAAGTTCACTTTGTAGACAATGTCTCTAGGTCGCAGTAATTATAAGTTTCATACCTATTGGCATTTAAGATATAACTCTCAAAGATTCCATTATTAGTGGAGCTGTGAGTCAAAATTGAAATATTGTTGGCAATATGGTTGTTCATGGCTGTTATTAGTGGTCACGTCACATAGCCTTCATCTAGGGAGAGGATGTTCCTTTAAAAACCTCACCTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAACATTTTTTATAAGTGTATGGAAACCTCTCCTAGCAGATGCGTTTTAAAAACCTTGAGGAGAAGTTCGAAAGGAAAAGCCCAAAGAGGACAATATCTGCTAGCAGTGAGCTTGGACCGTTACATCATCATTAGGAAGAGATCAACGAGCGCCTCAACATTTCTTCTTCTGTTCTCTTTTACTTATACCTTACATCATTTCCACCTTCATCCTCGGTGCGAGCCCCAATATCTGTATTAGGTAGATCATGTTGCCATTTTACAATCACATGATGTGTGATCTGAGTGAGCATTTTGCCACGTAACTAGTTAAATGGTCTAAGGGACACGACCTTTGGTGCAAACATTAGGAGGTCAAATTTAGGCTTGATTGCTCTTCTATTATGTGAGAGTATAAGATAGACCTTAGCTGGAAGTTTGTTCTGCATCAATAAAATTGCCCCATTTCTCTTTCCTTGAGATGCATATTGTTTGATTTTTTTTCTCTTACATTCATCACTCGTTATACTTAACATATTAACTAATGAGAAACAGCAATACGAATCGCCCGAGCTAGTTAATTAATGGAGCTCAACTTCTTGTCAGGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGTAAGATTCTTGGGACTGTTTGTTTTTTGCGCTGCTATGTGTGTCACTTTATGATTTCTCTTAGTTTACCAGCTTATTGTCTTGATTGTTGCAGGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTTAGCAGTATGCTTGCCAAGGGATTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATTGGGTTCACTGAGAAAATTAGCGCTGGAACGGTGTTGGTGGGCGACAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATCAGAAAAAGAAGACGGTCGAAACTTTGCATCTCCCGGAATCCCCTAAAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTGAATTGTTGTCATGTTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCCCCTTCAAATCTGGCATGGCTATATATATATATATTAGGATGAAAATATAGAGTAGATTTCTTCCTGAATTAGTGCTCGGACTCTTCATTGCATAAGATATCTTCATCTGCAAGAATTTTAAAACAGCAGATTTTTCATTATTGTCAACAAAGTCTCTCCTCTTTCTACAATGCTCATGTATCAGTGTAGTTCTG

mRNA sequence

TTTATTTCATCAGAGGCGACGAAGACTTGGACACACTGAGGGGAAATCCTAAATTCAGAATCAAGCTTATCGTTCTAATTTCGTGTAGATTTCAGTTTTCCGGCGATCGTCGGTTGATTCGATATCTGTTCCGGCGATTTATGTTCGTCATTTCTAGCAATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGTGACATTGCATATGTTGAAATGCAGAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATGCACAAGGAGCAGAGACTGCCACTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTTAGCAGTATGCTTGCCAAGGGATTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATTGGGTTCACTGAGAAAATTAGCGCTGGAACGGTGTTGGTGGGCGACAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATCAGAAAAAGAAGACGGTCGAAACTTTGCATCTCCCGGAATCCCCTAAAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTGAATTGTTGTCATGTTTGTTGATATCTATGCCTGAAAGTTCTTGTAGCTGTAATGTGTATTTCCCCTTCAAATCTGGCATGGCTATATATATATATATTAGGATGAAAATATAGAGTAGATTTCTTCCTGAATTAGTGCTCGGACTCTTCATTGCATAAGATATCTTCATCTGCAAGAATTTTAAAACAGCAGATTTTTCATTATTGTCAACAAAGTCTCTCCTCTTTCTACAATGCTCATGTATCAGTGTAGTTCTG

Coding sequence (CDS)

ATGTCGGTTAAAACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCGTCTGAACGAGATCTCAAGGAGTTTTTTTCCTTCTCGGGTGACATTGCATATGTTGAAATGCAGAGTGAAAGTGAACGGTCTCAAATCGCTTACGTAACCTTTAAGGATGCACAAGGAGCAGAGACTGCCACTCTTTTGTCTGGAGCGACAATAGTGGATCTTTCTGTCAACATCACTCCATGTCCTGATTATGTGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAATGCACCTGGAACGGCTGAATCCGCCTATCAGAAAGCAGAGGATGTGGTTAGCAGTATGCTTGCCAAGGGATTTATCTTGGGCAAAGACGCACTCAACTCTGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCCACAGCTTCAGCCAAAGTAGCTACATTGGATAAAAAAATTGGGTTCACTGAGAAAATTAGCGCTGGAACGGTGTTGGTGGGCGACAAAGTTCGAGAAGTAGACCAGAAGTTTCAGGTTTCAGAGAAGACTAAATCAGCATTTGCAGTTGCAGAAGAGAAAGTTAGCAATGCTGGAGCTGCCATTATGAGTAACCGATATGTAAAGAGTGGGACTAGCTGGGTTGCTGATACTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAATCGCGGTGTCGGAAGAAGATCAGAAAAAGAAGACGGTCGAAACTTTGCATCTCCCGGAATCCCCTAAAGCAGCACCTGTGCCCCCTGAGCCTCAACAACGTCCCAAGCCCGAACCCGCTCAAGGTCTGATCCTCTGA

Protein sequence

MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDAQGAETATLLSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGTAESAYQKAEDVVSSMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTVLVGDKVREVDQKFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEEDQKKKTVETLHLPESPKAAPVPPEPQQRPKPEPAQGLIL
Homology
BLAST of CmaCh16G011770 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.2e-66
Identity = 147/256 (57.42%), Postives = 190/256 (74.22%), Query Frame = 0

Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDAQGAETATLLS 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++QS +E S  AYVTFK+ QGAETA LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKGFIL 122
           GA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTVLVGDKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++K++AGT LV +K++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEE 242
           +TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+   + 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQP 244

Query: 243 DQKKKTVETLHLPESP 258
            Q  ++ + L    SP
Sbjct: 245 SQPAQSQQQLPEGYSP 250

BLAST of CmaCh16G011770 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 324.3 bits (830), Expect = 9.5e-89
Identity = 183/275 (66.55%), Postives = 219/275 (79.64%), Query Frame = 0

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDAQGAETATL 60
           M++ TVKVSNVSLGA++RDLKEFFSFSGDI Y+E QSE+ER+++AYVTFKD QGAETA L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAP-PPAPGTNAPGTAESAYQKAEDVVSSMLAKGF 120
           LSGATIVD SV ++  PDY L PEA A   P     +P   +S  +KAEDVVSSMLAKGF
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDVVSSMLAKGF 120

Query: 121 ILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTVLVGDKVREVDQKFQV 180
           ILGKDA+  AK+ DEKHQL+STASAKVA+ DKKIGFT+KI+ GTV+VG+KVREVDQK+QV
Sbjct: 121 ILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVS 240
           SEKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FNKVAKAA EVGQK KEK+ ++
Sbjct: 181 SEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 240

Query: 241 EEDQKKKTVE---TLHLPESPKAAPVPPEPQQRPK 272
           EE+ K+K V+    +HL ESPKAA    E ++  K
Sbjct: 241 EEEDKRKVVDEFARVHLSESPKAASSTQEAERESK 275

BLAST of CmaCh16G011770 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 297.0 bits (759), Expect = 1.6e-80
Identity = 171/281 (60.85%), Postives = 217/281 (77.22%), Query Frame = 0

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDAQGAETATL 60
           MS+ TVKVSNVSL A+ERDLKEFFSFSGDIAY+E QSE++ S++AYVTFKD QGAETA L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAP----PPAPGTNAPGTAE-SAYQKAEDVVSSML 120
           L+G+TIVD SV +T  PDY LPP+A A       +  +++P   + S ++KAEDVVS M+
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMI 120

Query: 121 AKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTVLVGDKVREVDQ 180
           +KGF+LGKDA+  AK+ DEKHQL+STASA+V + DK+IGFTEKI+ GT +V +KV+EVDQ
Sbjct: 121 SKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQ 180

Query: 181 KFQVSEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEK 240
           KFQV+EKTKSA A AE+ VSNAG+AIM NRYV +G +WV   FN+V+KAA EVGQK KEK
Sbjct: 181 KFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEK 240

Query: 241 I--AVSEEDQKKKTVE---TLHLPESPKAAPVPPEPQQRPK 272
           +  A  EE++KKK V+    +HL ESPKA     +  + P+
Sbjct: 241 VGLAEEEEEEKKKVVDEVAIVHLTESPKALDQSEQDSKLPE 281

BLAST of CmaCh16G011770 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 258.1 bits (658), Expect = 8.3e-69
Identity = 147/256 (57.42%), Postives = 190/256 (74.22%), Query Frame = 0

Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDAQGAETATLLS 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++QS +E S  AYVTFK+ QGAETA LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKGFIL 122
           GA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTVLVGDKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++K++AGT LV +K++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEE 242
           +TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+   + 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQP 244

Query: 243 DQKKKTVETLHLPESP 258
            Q  ++ + L    SP
Sbjct: 245 SQPAQSQQQLPEGYSP 251

BLAST of CmaCh16G011770 vs. TAIR 10
Match: AT5G16840.3 (binding partner of acd11 1 )

HSP 1 Score: 256.1 bits (653), Expect = 3.2e-68
Identity = 148/258 (57.36%), Postives = 192/258 (74.42%), Query Frame = 0

Query: 1   MSVKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDAQGAETATL 60
           M+V++VKV N+S GA+E D+KEFFSFSG++  +++QS +E S  AYVTFK+ QGAETA L
Sbjct: 1   MAVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVL 60

Query: 61  LSGATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKGF 120
           LSGA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKGF
Sbjct: 61  LSGASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGF 120

Query: 121 ILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTVLVGDKVREVDQKFQV 180
           ILGKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++K++AGT LV +K++ VDQ FQV
Sbjct: 121 ILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQV 180

Query: 181 SEKTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVS 240
           +E+TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+   
Sbjct: 181 TERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAE 240

Query: 241 EEDQKKKTVETLHLPESP 258
           +  Q  ++ + L    SP
Sbjct: 241 QPSQPAQSQQQLPEGYSP 248

BLAST of CmaCh16G011770 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-67
Identity = 147/256 (57.42%), Postives = 190/256 (74.22%), Query Frame = 0

Query: 3   VKTVKVSNVSLGASERDLKEFFSFSGDIAYVEMQSESERSQIAYVTFKDAQGAETATLLS 62
           V++VKV N+S GA+E D+KEFFSFSG++  +++QS +E S  AYVTFK+ QGAETA LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQS-NEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDLSVNITPCPDYVLPPEATAPPPAPGTNAPGT-AESAYQKAEDVVSSMLAKGFIL 122
           GA+I D SV I   P+Y       +PP AP      + AES  QKAEDVVSSMLAKGFIL
Sbjct: 65  GASIADQSVIIELAPNY-------SPPAAPHAETQSSGAESVVQKAEDVVSSMLAKGFIL 124

Query: 123 GKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTVLVGDKVREVDQKFQVSE 182
           GKDA+  AKAFDEKH  +STA+A VA+LD+KIG ++K++AGT LV +K++ VDQ FQV+E
Sbjct: 125 GKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNFQVTE 184

Query: 183 KTKSAFAVAEEKVSNAGAAIMSNRYVKSGTSWVADTFNKVAKAAGEVGQKTKEKIAVSEE 242
           +TKS +A AE+ VS+AG+A+M NRYV +G SW A  FN+VA+AAGEVGQKTKEK+   + 
Sbjct: 185 RTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKVEAEQP 244

Query: 243 DQKKKTVETLHLPESP 258
            Q  ++ + L    SP
Sbjct: 245 SQPAQSQQQLPEGYSP 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LFD52.2e-6657.42Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT4G17720.19.5e-8966.55RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G46870.11.6e-8060.85RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G16840.28.3e-6957.42binding partner of acd11 1 [more]
AT5G16840.33.2e-6857.36binding partner of acd11 1 [more]
AT5G16840.11.6e-6757.42binding partner of acd11 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 5..74
e-value: 4.9E-6
score: 36.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..64
e-value: 8.5E-6
score: 25.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 4..78
score: 10.291966
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..74
e-value: 3.4E-9
score: 38.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 229..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 229..280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..271
NoneNo IPR availablePANTHERPTHR32343:SF37BINDING PARTNER OF ACD11 1coord: 1..252
NoneNo IPR availablePANTHERPTHR32343SERINE/ARGININE-RICH SPLICING FACTORcoord: 1..252
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G011770.1CmaCh16G011770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding