CmaCh16G010500 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G010500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	non-specific lipid transfer protein-like 1
Location	Cma_Chr16: 8048949 .. 8049707 (-)
RNA-Seq Expression	CmaCh16G010500
Synteny	CmaCh16G010500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGGAGTAAATTCTGGTTTTCATTTCTATAAAAGTCCGAAAGCACAGAACTCGGAAACAACACGGAATCGAAAACGAATTGAAGAGGAGGAAAGATTACATGGCCGGAAGTTTGGTTTCCGTCGTGGTGGTGGCGGTGGCGGTGGCGGTGGTGGTGGTGACCGTCGGATTCGTGGAGGCGCAGCAGCCGGACTGTGCTTCTAAGCTAGCGGATTGTGCGAATTTCCTGAAATCCAATAATCCGCCGGCGACGTGCTGCAATCCGATTAAGGAAGCGGTGGCGACGCAGCTCGATTGCCTCTGCAACCTCTACACCTCGCCGGATTTCTTTTCGTCGATCGGCGTTAATGTCTCCGACGCTCTCCATCTCACTAAGGCCTGCGGCGTTACCACCGATCTCTCCAAGTGCAAAAGTATGACCGTTGATTCCTTCGATTTTTCTCAATTTGGTTCTCTGATTGATTATTTGACTGAATTTTCCTTTCTGCTCCGCCGTTGATTGTACAGCTGGTGCTCCGGCTCCGTCGCACGGTGCTCCATCTTTACCGGCAGGTAAATTTTTCCAACTTGATGGCTATTTTCGTCATTTCAGTTTTTATTTTCTGCAAATTCGTTGATATTTTTTAATGATATTGACAGCTGGATTTTTTATGAATAAATTAATTAGTTTTTTCAGTCAACCAACCTTGACCTTGTGAAATAAAATGATAATTAAATTTAGGCTAAATATCTAAATGATATTTTATCCCATCCACTGCTC

mRNA sequence

TAGGAGTAAATTCTGGTTTTCATTTCTATAAAAGTCCGAAAGCACAGAACTCGGAAACAACACGGAATCGAAAACGAATTGAAGAGGAGGAAAGATTACATGGCCGGAAGTTTGGTTTCCGTCGTGGTGGTGGCGGTGGCGGTGGCGGTGGTGGTGGTGACCGTCGGATTCGTGGAGGCGCAGCAGCCGGACTGTGCTTCTAAGCTAGCGGATTGTGCGAATTTCCTGAAATCCAATAATCCGCCGGCGACGTGCTGCAATCCGATTAAGGAAGCGGTGGCGACGCAGCTCGATTGCCTCTGCAACCTCTACACCTCGCCGGATTTCTTTTCGTCGATCGGCGTTAATGTCTCCGACGCTCTCCATCTCACTAAGGCCTGCGGCGTTACCACCGATCTCTCCAAGTGCAAAACTGGTGCTCCGGCTCCGTCGCACGGTGCTCCATCTTTACCGGCAGGTAAATTTTTCCAACTTGATGGCTATTTTCGTCATTTCAGTTTTTATTTTCTGCAAATTCGTTGATATTTTTTAATGATATTGACAGCTGGATTTTTTATGAATAAATTAATTAGTTTTTTCAGTCAACCAACCTTGACCTTGTGAAATAAAATGATAATTAAATTTAGGCTAAATATCTAAATGATATTTTATCCCATCCACTGCTC

Coding sequence (CDS)

ATGGCCGGAAGTTTGGTTTCCGTCGTGGTGGTGGCGGTGGCGGTGGCGGTGGTGGTGGTGACCGTCGGATTCGTGGAGGCGCAGCAGCCGGACTGTGCTTCTAAGCTAGCGGATTGTGCGAATTTCCTGAAATCCAATAATCCGCCGGCGACGTGCTGCAATCCGATTAAGGAAGCGGTGGCGACGCAGCTCGATTGCCTCTGCAACCTCTACACCTCGCCGGATTTCTTTTCGTCGATCGGCGTTAATGTCTCCGACGCTCTCCATCTCACTAAGGCCTGCGGCGTTACCACCGATCTCTCCAAGTGCAAAACTGGTGCTCCGGCTCCGTCGCACGGTGCTCCATCTTTACCGGCAGGTAAATTTTTCCAACTTGATGGCTATTTTCGTCATTTCAGTTTTTATTTTCTGCAAATTCGTTGA

Protein sequence

MAGSLVSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNNPPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKCKTGAPAPSHGAPSLPAGKFFQLDGYFRHFSFYFLQIR

Homology

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BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: Q6NLF7 (Non-specific lipid transfer protein GPI-anchored 7 OS=Arabidopsis thaliana OX=3702 GN=LTPG7 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 7   SVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNNPPA-TCCNPIKEAVATQLD 66
           ++++ A A+ V+ + +      Q +C SKL  C N L +   P   CC+ IKEAV  +L 
Sbjct: 4   TMMIFAAAMTVMALLLVPTIEAQTECVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKELT 63

Query: 67  CLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKCKT-GAPAPSHG-APSLPAG 121
           CLC +YTSP   +   V    AL L++ C VTTDLS C   GAP+P     P  PAG
Sbjct: 64  CLCTIYTSPGLLAQFNVTTEKALGLSRRCNVTTDLSACTAKGAPSPKASLPPPAPAG 120

[Close]

BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: Q9LE56 (Non-specific lipid transfer protein GPI-anchored 3 OS=Arabidopsis thaliana OX=3702 GN=LTPG3 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-12
Identity = 36/91 (39.56%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 26  EAQQPDCASKLADCANFLK-SNNPPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGVNV 85
           +A    C  KL  C  +L  +  PPATCC P+ E VA    CLC ++ + D   S+ +  
Sbjct: 35  DAHSLPCIQKLMPCQPYLHLATPPPATCCMPLNEIVAKDATCLCAVFNNVDMLKSLNLTK 94

Query: 86  SDALHLTKACGVTTDLSKCKTGAPAPSHGAP 116
            +AL L KACG   D+S CKT A   S   P
Sbjct: 95  ENALDLPKACGAKADVSLCKTSAGTNSSSTP 125

[Close]

BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: Q1PFD8 (Non-specific lipid transfer protein GPI-anchored 9 OS=Arabidopsis thaliana OX=3702 GN=LTPG9 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = 0


Query: 6   VSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNN--PPATCCNPIKEAVATQ 65
           ++VVV  V +  V  T      Q   C  KL  C  ++ S N  PP +CC P+KE V   
Sbjct: 7   LAVVVAVVVLYSVEATAQGGNPQLTACLQKLLPCQPYIHSLNPPPPPSCCGPMKEIVEKD 66

Query: 66  LDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKC-KTGAPAPSHGAPSLPAGKF 125
             CLC  + +P+   ++ +   +AL L KACGV  D+S C K   P+P   +P    G  
Sbjct: 67  APCLCIAFNNPEVLKALNLTKENALLLPKACGVNPDVSLCSKIATPSPI-ASPGSTNGTS 126

Query: 126 FQLDGYFRHFSF 135
                 F  FSF
Sbjct: 127 SASTISFNRFSF 137

[Close]

BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: B3H587 (Non-specific lipid transfer protein GPI-anchored 8 OS=Arabidopsis thaliana OX=3702 GN=LTPG8 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 5   LVSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLK-SNNPPATCCNPIKEAVATQ 64
           +V+ VV+  +V V     G V+ Q   C +KL  C  ++  S  PP  CCNP+K+     
Sbjct: 9   VVTTVVILYSVQVTAQFFGDVQ-QAMRCVAKLMPCQPYIHLSIPPPPLCCNPMKQIAEKD 68

Query: 65  LDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKC-KTGAPAPSHGAPSLPAGKF 124
           + CLC  +  PD    + +   +A+ +  +CG+  D S C KT   +P+    +  +G  
Sbjct: 69  VSCLCTAFKHPDLLRFLALTKENAIKILDSCGINHDPSVCNKTNPSSPAALPEAATSGNS 128

Query: 125 FQ------LDGYFRHFSFYFL 138
           F       L   F  FSF FL
Sbjct: 129 FSTKKNTALAITFFGFSFVFL 148

[Close]

BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: Q1G2Y5 (Non-specific lipid transfer protein GPI-anchored 21 OS=Arabidopsis thaliana OX=3702 GN=LTPG21 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-05
Identity = 30/90 (33.33%), Postives = 45/90 (50.00%), Query Frame = 0


Query: 30  PDCASKLADCANFLKSNN--PPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGVNVSDA 89
           P   S +  C +FL      P + CC  +K    T +DCLC + T+     SI +N + A
Sbjct: 35  PSMLSSVTGCTSFLTGGGSFPTSDCCGALKSLTGTGMDCLCLIVTA-GVPISIPINRTLA 94

Query: 90  LHLTKACGVTTDLSKCK-TGAPAPSHGAPS 117
           + L +ACG+     +CK + AP P+ G  S
Sbjct: 95  ISLPRACGIPGVPVQCKASAAPLPTPGPAS 123

[Close]

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G62790.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-14
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 7   SVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNNPPA-TCCNPIKEAVATQLD 66
           ++++ A A+ V+ + +      Q +C SKL  C N L +   P   CC+ IKEAV  +L 
Sbjct: 4   TMMIFAAAMTVMALLLVPTIEAQTECVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKELT 63

Query: 67  CLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKCKT-GAPAPSHG-APSLPAG 121
           CLC +YTSP   +   V    AL L++ C VTTDLS C   GAP+P     P  PAG
Sbjct: 64  CLCTIYTSPGLLAQFNVTTEKALGLSRRCNVTTDLSACTAKGAPSPKASLPPPAPAG 120

[Close]

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G62790.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-14
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 7   SVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNNPPA-TCCNPIKEAVATQLD 66
           ++++ A A+ V+ + +      Q +C SKL  C N L +   P   CC+ IKEAV  +L 
Sbjct: 4   TMMIFAAAMTVMALLLVPTIEAQTECVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKELT 63

Query: 67  CLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKCKT-GAPAPSHGAP 116
           CLC +YTSP   +   V    AL L++ C VTTDLS C   GAP+P    P
Sbjct: 64  CLCTIYTSPGLLAQFNVTTEKALGLSRRCNVTTDLSACTAKGAPSPKASLP 114

[Close]

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G18280.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-13
Identity = 36/91 (39.56%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 26  EAQQPDCASKLADCANFLK-SNNPPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGVNV 85
           +A    C  KL  C  +L  +  PPATCC P+ E VA    CLC ++ + D   S+ +  
Sbjct: 35  DAHSLPCIQKLMPCQPYLHLATPPPATCCMPLNEIVAKDATCLCAVFNNVDMLKSLNLTK 94

Query: 86  SDALHLTKACGVTTDLSKCKTGAPAPSHGAP 116
            +AL L KACG   D+S CKT A   S   P
Sbjct: 95  ENALDLPKACGAKADVSLCKTSAGTNSSSTP 125

[Close]

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G73560.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.5e-10
Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = 0


Query: 6   VSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNN--PPATCCNPIKEAVATQ 65
           ++VVV  V +  V  T      Q   C  KL  C  ++ S N  PP +CC P+KE V   
Sbjct: 7   LAVVVAVVVLYSVEATAQGGNPQLTACLQKLLPCQPYIHSLNPPPPPSCCGPMKEIVEKD 66

Query: 66  LDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKC-KTGAPAPSHGAPSLPAGKF 125
             CLC  + +P+   ++ +   +AL L KACGV  D+S C K   P+P   +P    G  
Sbjct: 67  APCLCIAFNNPEVLKALNLTKENALLLPKACGVNPDVSLCSKIATPSPI-ASPGSTNGTS 126

Query: 126 FQLDGYFRHFSF 135
                 F  FSF
Sbjct: 127 SASTISFNRFSF 137

[Close]

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G73550.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 5   LVSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLK-SNNPPATCCNPIKEAVATQ 64
           +V+ VV+  +V V     G V+ Q   C +KL  C  ++  S  PP  CCNP+K+     
Sbjct: 9   VVTTVVILYSVQVTAQFFGDVQ-QAMRCVAKLMPCQPYIHLSIPPPPLCCNPMKQIAEKD 68

Query: 65  LDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKC-KTGAPAPSHGAPSLPAGKF 124
           + CLC  +  PD    + +   +A+ +  +CG+  D S C KT   +P+    +  +G  
Sbjct: 69  VSCLCTAFKHPDLLRFLALTKENAIKILDSCGINHDPSVCNKTNPSSPAALPEAATSGNS 128

Query: 125 FQ------LDGYFRHFSFYFL 138
           F       L   F  FSF FL
Sbjct: 129 FSTKKNTALAITFFGFSFVFL 148

The following BLAST results are available for this feature:

BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLF7	1.4e-13	40.17	Non-specific lipid transfer protein GPI-anchored 7 OS=Arabidopsis thaliana OX=37...	[more]
Q9LE56	4.6e-12	39.56	Non-specific lipid transfer protein GPI-anchored 3 OS=Arabidopsis thaliana OX=37...	[more]
Q1PFD8	1.1e-08	34.09	Non-specific lipid transfer protein GPI-anchored 9 OS=Arabidopsis thaliana OX=37...	[more]
B3H587	1.7e-06	30.50	Non-specific lipid transfer protein GPI-anchored 8 OS=Arabidopsis thaliana OX=37...	[more]
Q1G2Y5	5.4e-05	33.33	Non-specific lipid transfer protein GPI-anchored 21 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CmaCh16G010500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62790.1	1.0e-14	40.17	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G62790.2	2.9e-14	39.64	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G18280.1	3.2e-13	39.56	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G73560.1	7.5e-10	34.09	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G73550.1	1.2e-07	30.50	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 32..103 e-value: 0.003 score: 26.8
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 19..103 e-value: 8.1E-16 score: 58.0
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 30..105 e-value: 3.1E-12 score: 48.2
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 31..103
None	No IPR available	PANTHER	PTHR33044:SF37	OS10G0191100 PROTEIN	coord: 6..115
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 36..96 e-value: 1.22503E-13 score: 59.7479
IPR043325	Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein	PANTHER	PTHR33044	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 6..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G010500.1	CmaCh16G010500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane