CmaCh16G010500 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G010500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionnon-specific lipid transfer protein-like 1
LocationCma_Chr16: 8048949 .. 8049707 (-)
RNA-Seq ExpressionCmaCh16G010500
SyntenyCmaCh16G010500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGAGTAAATTCTGGTTTTCATTTCTATAAAAGTCCGAAAGCACAGAACTCGGAAACAACACGGAATCGAAAACGAATTGAAGAGGAGGAAAGATTACATGGCCGGAAGTTTGGTTTCCGTCGTGGTGGTGGCGGTGGCGGTGGCGGTGGTGGTGGTGACCGTCGGATTCGTGGAGGCGCAGCAGCCGGACTGTGCTTCTAAGCTAGCGGATTGTGCGAATTTCCTGAAATCCAATAATCCGCCGGCGACGTGCTGCAATCCGATTAAGGAAGCGGTGGCGACGCAGCTCGATTGCCTCTGCAACCTCTACACCTCGCCGGATTTCTTTTCGTCGATCGGCGTTAATGTCTCCGACGCTCTCCATCTCACTAAGGCCTGCGGCGTTACCACCGATCTCTCCAAGTGCAAAAGTATGACCGTTGATTCCTTCGATTTTTCTCAATTTGGTTCTCTGATTGATTATTTGACTGAATTTTCCTTTCTGCTCCGCCGTTGATTGTACAGCTGGTGCTCCGGCTCCGTCGCACGGTGCTCCATCTTTACCGGCAGGTAAATTTTTCCAACTTGATGGCTATTTTCGTCATTTCAGTTTTTATTTTCTGCAAATTCGTTGATATTTTTTAATGATATTGACAGCTGGATTTTTTATGAATAAATTAATTAGTTTTTTCAGTCAACCAACCTTGACCTTGTGAAATAAAATGATAATTAAATTTAGGCTAAATATCTAAATGATATTTTATCCCATCCACTGCTC

mRNA sequence

TAGGAGTAAATTCTGGTTTTCATTTCTATAAAAGTCCGAAAGCACAGAACTCGGAAACAACACGGAATCGAAAACGAATTGAAGAGGAGGAAAGATTACATGGCCGGAAGTTTGGTTTCCGTCGTGGTGGTGGCGGTGGCGGTGGCGGTGGTGGTGGTGACCGTCGGATTCGTGGAGGCGCAGCAGCCGGACTGTGCTTCTAAGCTAGCGGATTGTGCGAATTTCCTGAAATCCAATAATCCGCCGGCGACGTGCTGCAATCCGATTAAGGAAGCGGTGGCGACGCAGCTCGATTGCCTCTGCAACCTCTACACCTCGCCGGATTTCTTTTCGTCGATCGGCGTTAATGTCTCCGACGCTCTCCATCTCACTAAGGCCTGCGGCGTTACCACCGATCTCTCCAAGTGCAAAACTGGTGCTCCGGCTCCGTCGCACGGTGCTCCATCTTTACCGGCAGGTAAATTTTTCCAACTTGATGGCTATTTTCGTCATTTCAGTTTTTATTTTCTGCAAATTCGTTGATATTTTTTAATGATATTGACAGCTGGATTTTTTATGAATAAATTAATTAGTTTTTTCAGTCAACCAACCTTGACCTTGTGAAATAAAATGATAATTAAATTTAGGCTAAATATCTAAATGATATTTTATCCCATCCACTGCTC

Coding sequence (CDS)

ATGGCCGGAAGTTTGGTTTCCGTCGTGGTGGTGGCGGTGGCGGTGGCGGTGGTGGTGGTGACCGTCGGATTCGTGGAGGCGCAGCAGCCGGACTGTGCTTCTAAGCTAGCGGATTGTGCGAATTTCCTGAAATCCAATAATCCGCCGGCGACGTGCTGCAATCCGATTAAGGAAGCGGTGGCGACGCAGCTCGATTGCCTCTGCAACCTCTACACCTCGCCGGATTTCTTTTCGTCGATCGGCGTTAATGTCTCCGACGCTCTCCATCTCACTAAGGCCTGCGGCGTTACCACCGATCTCTCCAAGTGCAAAACTGGTGCTCCGGCTCCGTCGCACGGTGCTCCATCTTTACCGGCAGGTAAATTTTTCCAACTTGATGGCTATTTTCGTCATTTCAGTTTTTATTTTCTGCAAATTCGTTGA

Protein sequence

MAGSLVSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNNPPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKCKTGAPAPSHGAPSLPAGKFFQLDGYFRHFSFYFLQIR
Homology
BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: Q6NLF7 (Non-specific lipid transfer protein GPI-anchored 7 OS=Arabidopsis thaliana OX=3702 GN=LTPG7 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 0

Query: 7   SVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNNPPA-TCCNPIKEAVATQLD 66
           ++++ A A+ V+ + +      Q +C SKL  C N L +   P   CC+ IKEAV  +L 
Sbjct: 4   TMMIFAAAMTVMALLLVPTIEAQTECVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKELT 63

Query: 67  CLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKCKT-GAPAPSHG-APSLPAG 121
           CLC +YTSP   +   V    AL L++ C VTTDLS C   GAP+P     P  PAG
Sbjct: 64  CLCTIYTSPGLLAQFNVTTEKALGLSRRCNVTTDLSACTAKGAPSPKASLPPPAPAG 120

BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: Q9LE56 (Non-specific lipid transfer protein GPI-anchored 3 OS=Arabidopsis thaliana OX=3702 GN=LTPG3 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.6e-12
Identity = 36/91 (39.56%), Postives = 47/91 (51.65%), Query Frame = 0

Query: 26  EAQQPDCASKLADCANFLK-SNNPPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGVNV 85
           +A    C  KL  C  +L  +  PPATCC P+ E VA    CLC ++ + D   S+ +  
Sbjct: 35  DAHSLPCIQKLMPCQPYLHLATPPPATCCMPLNEIVAKDATCLCAVFNNVDMLKSLNLTK 94

Query: 86  SDALHLTKACGVTTDLSKCKTGAPAPSHGAP 116
            +AL L KACG   D+S CKT A   S   P
Sbjct: 95  ENALDLPKACGAKADVSLCKTSAGTNSSSTP 125

BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: Q1PFD8 (Non-specific lipid transfer protein GPI-anchored 9 OS=Arabidopsis thaliana OX=3702 GN=LTPG9 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = 0

Query: 6   VSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNN--PPATCCNPIKEAVATQ 65
           ++VVV  V +  V  T      Q   C  KL  C  ++ S N  PP +CC P+KE V   
Sbjct: 7   LAVVVAVVVLYSVEATAQGGNPQLTACLQKLLPCQPYIHSLNPPPPPSCCGPMKEIVEKD 66

Query: 66  LDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKC-KTGAPAPSHGAPSLPAGKF 125
             CLC  + +P+   ++ +   +AL L KACGV  D+S C K   P+P   +P    G  
Sbjct: 67  APCLCIAFNNPEVLKALNLTKENALLLPKACGVNPDVSLCSKIATPSPI-ASPGSTNGTS 126

Query: 126 FQLDGYFRHFSF 135
                 F  FSF
Sbjct: 127 SASTISFNRFSF 137

BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: B3H587 (Non-specific lipid transfer protein GPI-anchored 8 OS=Arabidopsis thaliana OX=3702 GN=LTPG8 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 0

Query: 5   LVSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLK-SNNPPATCCNPIKEAVATQ 64
           +V+ VV+  +V V     G V+ Q   C +KL  C  ++  S  PP  CCNP+K+     
Sbjct: 9   VVTTVVILYSVQVTAQFFGDVQ-QAMRCVAKLMPCQPYIHLSIPPPPLCCNPMKQIAEKD 68

Query: 65  LDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKC-KTGAPAPSHGAPSLPAGKF 124
           + CLC  +  PD    + +   +A+ +  +CG+  D S C KT   +P+    +  +G  
Sbjct: 69  VSCLCTAFKHPDLLRFLALTKENAIKILDSCGINHDPSVCNKTNPSSPAALPEAATSGNS 128

Query: 125 FQ------LDGYFRHFSFYFL 138
           F       L   F  FSF FL
Sbjct: 129 FSTKKNTALAITFFGFSFVFL 148

BLAST of CmaCh16G010500 vs. ExPASy Swiss-Prot
Match: Q1G2Y5 (Non-specific lipid transfer protein GPI-anchored 21 OS=Arabidopsis thaliana OX=3702 GN=LTPG21 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.4e-05
Identity = 30/90 (33.33%), Postives = 45/90 (50.00%), Query Frame = 0

Query: 30  PDCASKLADCANFLKSNN--PPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGVNVSDA 89
           P   S +  C +FL      P + CC  +K    T +DCLC + T+     SI +N + A
Sbjct: 35  PSMLSSVTGCTSFLTGGGSFPTSDCCGALKSLTGTGMDCLCLIVTA-GVPISIPINRTLA 94

Query: 90  LHLTKACGVTTDLSKCK-TGAPAPSHGAPS 117
           + L +ACG+     +CK + AP P+ G  S
Sbjct: 95  ISLPRACGIPGVPVQCKASAAPLPTPGPAS 123

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G62790.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-14
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 0

Query: 7   SVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNNPPA-TCCNPIKEAVATQLD 66
           ++++ A A+ V+ + +      Q +C SKL  C N L +   P   CC+ IKEAV  +L 
Sbjct: 4   TMMIFAAAMTVMALLLVPTIEAQTECVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKELT 63

Query: 67  CLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKCKT-GAPAPSHG-APSLPAG 121
           CLC +YTSP   +   V    AL L++ C VTTDLS C   GAP+P     P  PAG
Sbjct: 64  CLCTIYTSPGLLAQFNVTTEKALGLSRRCNVTTDLSACTAKGAPSPKASLPPPAPAG 120

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G62790.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-14
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 0

Query: 7   SVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNNPPA-TCCNPIKEAVATQLD 66
           ++++ A A+ V+ + +      Q +C SKL  C N L +   P   CC+ IKEAV  +L 
Sbjct: 4   TMMIFAAAMTVMALLLVPTIEAQTECVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKELT 63

Query: 67  CLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKCKT-GAPAPSHGAP 116
           CLC +YTSP   +   V    AL L++ C VTTDLS C   GAP+P    P
Sbjct: 64  CLCTIYTSPGLLAQFNVTTEKALGLSRRCNVTTDLSACTAKGAPSPKASLP 114

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G18280.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-13
Identity = 36/91 (39.56%), Postives = 47/91 (51.65%), Query Frame = 0

Query: 26  EAQQPDCASKLADCANFLK-SNNPPATCCNPIKEAVATQLDCLCNLYTSPDFFSSIGVNV 85
           +A    C  KL  C  +L  +  PPATCC P+ E VA    CLC ++ + D   S+ +  
Sbjct: 35  DAHSLPCIQKLMPCQPYLHLATPPPATCCMPLNEIVAKDATCLCAVFNNVDMLKSLNLTK 94

Query: 86  SDALHLTKACGVTTDLSKCKTGAPAPSHGAP 116
            +AL L KACG   D+S CKT A   S   P
Sbjct: 95  ENALDLPKACGAKADVSLCKTSAGTNSSSTP 125

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G73560.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.5e-10
Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = 0

Query: 6   VSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLKSNN--PPATCCNPIKEAVATQ 65
           ++VVV  V +  V  T      Q   C  KL  C  ++ S N  PP +CC P+KE V   
Sbjct: 7   LAVVVAVVVLYSVEATAQGGNPQLTACLQKLLPCQPYIHSLNPPPPPSCCGPMKEIVEKD 66

Query: 66  LDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKC-KTGAPAPSHGAPSLPAGKF 125
             CLC  + +P+   ++ +   +AL L KACGV  D+S C K   P+P   +P    G  
Sbjct: 67  APCLCIAFNNPEVLKALNLTKENALLLPKACGVNPDVSLCSKIATPSPI-ASPGSTNGTS 126

Query: 126 FQLDGYFRHFSF 135
                 F  FSF
Sbjct: 127 SASTISFNRFSF 137

BLAST of CmaCh16G010500 vs. TAIR 10
Match: AT1G73550.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 43/141 (30.50%), Postives = 66/141 (46.81%), Query Frame = 0

Query: 5   LVSVVVVAVAVAVVVVTVGFVEAQQPDCASKLADCANFLK-SNNPPATCCNPIKEAVATQ 64
           +V+ VV+  +V V     G V+ Q   C +KL  C  ++  S  PP  CCNP+K+     
Sbjct: 9   VVTTVVILYSVQVTAQFFGDVQ-QAMRCVAKLMPCQPYIHLSIPPPPLCCNPMKQIAEKD 68

Query: 65  LDCLCNLYTSPDFFSSIGVNVSDALHLTKACGVTTDLSKC-KTGAPAPSHGAPSLPAGKF 124
           + CLC  +  PD    + +   +A+ +  +CG+  D S C KT   +P+    +  +G  
Sbjct: 69  VSCLCTAFKHPDLLRFLALTKENAIKILDSCGINHDPSVCNKTNPSSPAALPEAATSGNS 128

Query: 125 FQ------LDGYFRHFSFYFL 138
           F       L   F  FSF FL
Sbjct: 129 FSTKKNTALAITFFGFSFVFL 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6NLF71.4e-1340.17Non-specific lipid transfer protein GPI-anchored 7 OS=Arabidopsis thaliana OX=37... [more]
Q9LE564.6e-1239.56Non-specific lipid transfer protein GPI-anchored 3 OS=Arabidopsis thaliana OX=37... [more]
Q1PFD81.1e-0834.09Non-specific lipid transfer protein GPI-anchored 9 OS=Arabidopsis thaliana OX=37... [more]
B3H5871.7e-0630.50Non-specific lipid transfer protein GPI-anchored 8 OS=Arabidopsis thaliana OX=37... [more]
Q1G2Y55.4e-0533.33Non-specific lipid transfer protein GPI-anchored 21 OS=Arabidopsis thaliana OX=3... [more]
Match NameE-valueIdentityDescription
AT1G62790.11.0e-1440.17Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT1G62790.22.9e-1439.64Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT1G18280.13.2e-1339.56Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT1G73560.17.5e-1034.09Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT1G73550.11.2e-0730.50Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 32..103
e-value: 0.003
score: 26.8
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 19..103
e-value: 8.1E-16
score: 58.0
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilyGENE3D1.10.110.10coord: 30..105
e-value: 3.1E-12
score: 48.2
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILY47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 31..103
NoneNo IPR availablePANTHERPTHR33044:SF37OS10G0191100 PROTEINcoord: 6..115
NoneNo IPR availableCDDcd00010AAI_LTSScoord: 36..96
e-value: 1.22503E-13
score: 59.7479
IPR043325Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) ProteinPANTHERPTHR33044BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATEDcoord: 6..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G010500.1CmaCh16G010500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane