Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTTGATATCATCCAATTTGGTGCAACATCCGATGGAAAAATGGATAGCGCGAAGGTAAAATTATATACTCGATTCAAACAACTTTTGTTCATTATTTACAATATTAGTATATGTTTCATAGGCAACATTTTTATTTTTTATTTTATATTCTTTTAAAAGTTTTTGAAAAATAGAACGCATTAGAAACATTATTTTAAAAATACCATTTTTCAAATGGGATACAATTTTTGGAAACAAGGCCATGAGTTTCTTAAGCCTTTTTGGTTTTTTCTTTGTTTTATTATCTATTTCAGGTCTATAAAACAAATTTTTAAAACTAAAAAATTATATATTTTTTGTTTTTTGATAATTCATCAGCATAATAAATATCTAAACGAAAATAATAATGTAAAAATAATTTTTATATTATTTATGGTAAATTCAGTCGCACACTAAAAAAAATTTAAAAATTTCCAAAAATAATAAAATTTAAAATTTAAGGTATTTAGTTGAAAGTAGATTAAGTTATTTAGTTTGTATAGGCATTAAGTAGCGCATGGAGGGAAGCTTGTGGACATAATGGAGGTGGTGTAGTTTTAGAGCCGATGTTCCTTTTCGAAGAGTAGAATCGAAGTATAGTGTTGAACAGGTCGGTGAAGGGAGGTTTCTAGTTTTGCCGTTGGTGCTTGAAGGTCCATGTAAAGGATCCATTGGTCTGGATATTAAAGGTGAACTGTTGGCTCCAGTTGCCAAGAATTTCTCCATCGGTGAATATTGGCTAAGTATTTATCAAGTGGACAACTTTTTTGTTGACGGTCCTCGCAGCTTGAACGGCGGTGGTTCTTCAGCTTGGTCTTCCAACACTTCTAAACGTCCAATTGTAAGTCTATTTTGAGGTTTAAATACTAAAAAAAAGTTGATTGGTTAGGTTGCAGTTAAATGGATGCAATCATTTTACATTTATTTTAAATGTAAACCAAAATATACTTGTGCATGATATAATGTCAACACAGCGAGAATTGCAAAGATAACATCGTCCAATAGCAAGTTGTTCCATTTTGCTGTGCATGGATGTCGTGATGTCACGTTTGATCACGTTACAGTCCCAATACAGATGGAATTCACGTTTCAAACTCAAGTGGTGTCAACATTATGCATTCAGTGATTGACACTGGAGACGATTGTATCTCTTTGGGCCCGGGAAGTAGATTCATCAACATAACAAACATCCATTGTGGTCCAGGTCACGGAATCAGCATCGGCAGCCTTGGAAAATACCCAAATGAGGAAGATGTCTCTGACGTTTTAGTAAGAGACTCCACATTTGTTGGTACAGACAACGGTGTGAGGATCAAAACATGGTCGTCTTCACATCCTAGTTTTGTTACCAAGATTGTTTTTCTCAATCTCGAAATGAAGGACGTAAGAAACCCTATGATCATTGATCAAAAATATTGCCTTGACTGCAGCAGAGATAAAATGGTATATATATTCAAATTTGATATCGTTAGGTTTTAGTAAAAGTGAAAATGGTATTACAATGAATGTTGTTTGTGGTGGACAGAGTACTTCAAGAGTGCAGATTCGAGACGTGAGATATGAAGGTATACGGGGGACTTCAGCAACCCAAGCGGCAGTAAATTTTGAATGCAGCCAAGTTTTTCCATGCGAAGGCATAGTGTTGCAAGACATTAACCTCTCCTTTAATGGTGGTGGCCAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAACTTCCTTCCTCTTGCCTT
mRNA sequence
CGTTTGATATCATCCAATTTGGTGCAACATCCGATGGAAAAATGGATAGCGCGAAGGCATTAAGTAGCGCATGGAGGGAAGCTTGTGGACATAATGGAGGTGGTGTAGTTTTAGAGCCGATAGTAGAATCGAAGTATAGTGTTGAACAGGTCGGTGAAGGGAGGTTTCTAGTTTTGCCGTTGGTGCTTGAAGGTCCATGTAAAGGATCCATTGGTCTGGATATTAAAGGTGAACTGTTGGCTCCAGTTGCCAAGAATTTCTCCATCGGTGAATATTGGCTAAGTATTTATCAAGTGGACAACTTTTTTGTTGACGGTCCTCGCAGCTTGAACGGCGGTGGTTCTTCAGCTTGGTCTTCCAACACTTCTAAACGTCCAATTGTAACGAGAATTGCAAAGATAACATCGTCCAATAGCAAGTTGTTCCATTTTGCTGTGCATGGATGTCGTGATGTCACTCCCAATACAGATGGAATTCACGTTTCAAACTCAAGTGGTGTCAACATTATGCATTCAGTGATTGACACTGGAGACGATTGTATCTCTTTGGGCCCGGGAAGTAGATTCATCAACATAACAAACATCCATTGTGGTCCAGGTCACGGAATCAGCATCGGCAGCCTTGGAAAATACCCAAATGAGGAAGATGTCTCTGACGTTTTAGTAAGAGACTCCACATTTGTTGGTACAGACAACGGTGTGAGGATCAAAACATGGTCGTCTTCACATCCTAGTTTTGTTACCAAGATTGTTTTTCTCAATCTCGAAATGAAGGACGTAAGAAACCCTATGATCATTGATCAAAAATATTGCCTTGACTGCAGCAGAGATAAAATGAGTACTTCAAGAGTGCAGATTCGAGACGTGAGATATGAAGGTATACGGGGGACTTCAGCAACCCAAGCGGCAGTAAATTTTGAATGCAGCCAAGTTTTTCCATGCGAAGGCATAGTGTTGCAAGACATTAACCTCTCCTTTAATGGTGGTGGCCAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAACTTCCTTCCTCTTGCCTT
Coding sequence (CDS)
ATGGATAGCGCGAAGGCATTAAGTAGCGCATGGAGGGAAGCTTGTGGACATAATGGAGGTGGTGTAGTTTTAGAGCCGATAGTAGAATCGAAGTATAGTGTTGAACAGGTCGGTGAAGGGAGGTTTCTAGTTTTGCCGTTGGTGCTTGAAGGTCCATGTAAAGGATCCATTGGTCTGGATATTAAAGGTGAACTGTTGGCTCCAGTTGCCAAGAATTTCTCCATCGGTGAATATTGGCTAAGTATTTATCAAGTGGACAACTTTTTTGTTGACGGTCCTCGCAGCTTGAACGGCGGTGGTTCTTCAGCTTGGTCTTCCAACACTTCTAAACGTCCAATTGTAACGAGAATTGCAAAGATAACATCGTCCAATAGCAAGTTGTTCCATTTTGCTGTGCATGGATGTCGTGATGTCACTCCCAATACAGATGGAATTCACGTTTCAAACTCAAGTGGTGTCAACATTATGCATTCAGTGATTGACACTGGAGACGATTGTATCTCTTTGGGCCCGGGAAGTAGATTCATCAACATAACAAACATCCATTGTGGTCCAGGTCACGGAATCAGCATCGGCAGCCTTGGAAAATACCCAAATGAGGAAGATGTCTCTGACGTTTTAGTAAGAGACTCCACATTTGTTGGTACAGACAACGGTGTGAGGATCAAAACATGGTCGTCTTCACATCCTAGTTTTGTTACCAAGATTGTTTTTCTCAATCTCGAAATGAAGGACGTAAGAAACCCTATGATCATTGATCAAAAATATTGCCTTGACTGCAGCAGAGATAAAATGAGTACTTCAAGAGTGCAGATTCGAGACGTGAGATATGAAGGTATACGGGGGACTTCAGCAACCCAAGCGGCAGTAAATTTTGAATGCAGCCAAGTTTTTCCATGCGAAGGCATAGTGTTGCAAGACATTAACCTCTCCTTTAATGGTGGTGGCCAACCAACTTCCATTTGTCACAATGTGAAGGGCTCTGCTTTTGGCAAACAACTTCCTTCCTCTTGCCTT
Protein sequence
MDSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLDIKGELLAPVAKNFSIGEYWLSIYQVDNFFVDGPRSLNGGGSSAWSSNTSKRPIVTRIAKITSSNSKLFHFAVHGCRDVTPNTDGIHVSNSSGVNIMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDSTFVGTDNGVRIKTWSSSHPSFVTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQIRDVRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNGGGQPTSICHNVKGSAFGKQLPSSCL
Homology
BLAST of CmaCh16G009330 vs. ExPASy Swiss-Prot
Match:
P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)
HSP 1 Score: 275.4 bits (703), Expect = 8.6e-73
Identity = 149/366 (40.71%), Postives = 211/366 (57.65%), Query Frame = 0
Query: 2 DSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLDI 61
DS +AL++AW+EAC +L P +G F V + LEGPCK SIGL +
Sbjct: 1 DSTQALTTAWKEACASASPSTILVP------------KGNFAVGLITLEGPCKSSIGLQL 60
Query: 62 KGELLAPVAKNFSIGEYWLSIYQVDNFFVDGPRSLNGGGSSAWSSNTSKR--PIVTRIA- 121
+G L AP + G W+++ ++D + G +G G SAW N + PI ++
Sbjct: 61 QGTLKAPADPSKIKGLGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSM 120
Query: 122 -------------KITSSNSKLFHFAVHGCRDVT------------PNTDGIHVSNSSGV 181
+T+ +SK FH V GC+++T NTDGIH+ S GV
Sbjct: 121 NLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGV 180
Query: 182 NIMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDSTF 241
NI+++ I TGDDCISLG GS+ INITNI CGPGHGIS+GSLG+Y NEE V + V++ T
Sbjct: 181 NIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTI 240
Query: 242 VGTDNGVRIKTWSSSHPSFVTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQIR 301
G+ NGVRIKTW S P +++ F ++ M V P++IDQ YC S V++
Sbjct: 241 TGSQNGVRIKTWPKSEPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLS 300
Query: 302 DVRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNG-GGQPTSICHNVKGSAFGK 339
+ ++ I+GTS T+ AV CS+ FPC G+ L DI+L+++G GG TS+C N+K + GK
Sbjct: 301 KISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGK 354
BLAST of CmaCh16G009330 vs. ExPASy Swiss-Prot
Match:
Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)
HSP 1 Score: 271.6 bits (693), Expect = 1.2e-71
Identity = 148/364 (40.66%), Postives = 208/364 (57.14%), Query Frame = 0
Query: 2 DSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGS-IGLD 61
D ++A+ AW+ AC G VL P +G + + + ++GPCKGS IG
Sbjct: 22 DISQAVMKAWKAACASQGPSTVLIP------------KGNYNMGEVAMQGPCKGSKIGFQ 81
Query: 62 IKGELLAPVAKNFSIGEYWLSIYQVDNFFVDGPRSLNGGGSSAWS-SNTSKRPIVTRIA- 121
I G + AP + + W+S Y++D V G +L+G G +AW+ +N K P A
Sbjct: 82 IDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCKHAAM 141
Query: 122 -------------KITSSNSKLFHFAVHGCRDVT------------PNTDGIHVSNSSGV 181
ITS NSK+FH V C D+T NTDGIHV S GV
Sbjct: 142 NLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGV 201
Query: 182 NIMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDSTF 241
I ++ I TGDDCIS+GPGS+ + IT ++CGPGHGISIGSLG+Y NE++V + V+ TF
Sbjct: 202 TITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGCTF 261
Query: 242 VGTDNGVRIKTWSSSHPSFVTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQIR 301
GT NGVR+KTW +S P T + F +L M +V+NP+I+DQ+YC + + SR+++
Sbjct: 262 SGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQAPSRIKLS 321
Query: 302 DVRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNGGGQP-TSICHNVKGSAFGK 337
++ + IRGTS + AV CS PC + + +INLS+ G G P TS C NVK + GK
Sbjct: 322 NINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTCSNVKPTFSGK 373
BLAST of CmaCh16G009330 vs. ExPASy Swiss-Prot
Match:
P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)
HSP 1 Score: 260.8 bits (665), Expect = 2.2e-68
Identity = 142/360 (39.44%), Postives = 201/360 (55.83%), Query Frame = 0
Query: 2 DSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLDI 61
DS KA+ AW ACG G +L P +G FLV PL GPCKG + + +
Sbjct: 55 DSTKAVQEAWASACGGTGKQTILIP------------KGDFLVGPLNFTGPCKGDVTIQV 114
Query: 62 KGELLAPV-AKNFSIGEYWLSIYQVDNFFVDGPRSLNGGGSSAWSSNTSKRPIVTRI--- 121
G LLA + W+ I +VDN + G L+G G + WS N+ + +I
Sbjct: 115 NGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYDCKILPN 174
Query: 122 ------------AKITSSNSKLFHFAVHGCRDV------------TPNTDGIHVSNSSGV 181
+ IT NSK FH ++ C+D+ +PNTDGIH+ +SSGV
Sbjct: 175 SLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGV 234
Query: 182 NIMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDSTF 241
I ++VI GDDCIS+GPG+ +NIT + CGPGHGISIGSLG+Y +E+DV+D+ V+D T
Sbjct: 235 TITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTL 294
Query: 242 VGTDNGVRIKTWSSSHPSF-VTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQI 301
T NGVRIK + + +KI + N++M+D P+IID KYC + S+V +
Sbjct: 295 KKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTANGASKVTV 354
Query: 302 RDVRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNGGGQPT-SICHNVKGSAFG 332
+DV ++ I GTS+T AVN C+ PC G+ + D+N+ ++G T ++C N KGSA G
Sbjct: 355 KDVTFKNITGTSSTPEAVNLLCTAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNAKGSAKG 402
BLAST of CmaCh16G009330 vs. ExPASy Swiss-Prot
Match:
P49063 (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 PE=2 SV=2)
HSP 1 Score: 253.4 bits (646), Expect = 3.5e-66
Identity = 143/367 (38.96%), Postives = 203/367 (55.31%), Query Frame = 0
Query: 2 DSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLDI 61
D + A ++AW+EAC G + P +G ++V L +GPCKG + L++
Sbjct: 84 DDSAAFAAAWKEACA--AGSTITVP------------KGEYMVESLEFKGPCKGPVTLEL 143
Query: 62 KGELLAP-VAKNFSIGEYWLSIYQVDNFFVDGPRSL-NGGGSSAWSSNTSKR-------P 121
G AP K W+ + +F ++G +++ +G GS AW +N + P
Sbjct: 144 NGNFKAPATVKTTKPHAGWIDFENIADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLP 203
Query: 122 IVTR--------IAKITSSNSKLFHFAVHGCRDVT------------PNTDGIHVSNSSG 181
I R I ITS+NSKLFH + C+++T NTDGIH+ S+G
Sbjct: 204 INIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNG 263
Query: 182 VNIMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDST 241
VN++ + I TGDDC+S+G G+ + + N+ CGPGHGISIGSLG+YPNE+ V V VR
Sbjct: 264 VNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCL 323
Query: 242 FVGTDNGVRIKTWSSSHPSFVTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQI 301
TDNGVRIKTW S P + I+F ++ M +V P++IDQ+YC S+V++
Sbjct: 324 IKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKL 383
Query: 302 RDVRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNG-GGQPTSICHNVKGSAFG 339
DV +GI+GTSAT+ AV CS+ PC I L DINL NG G S C N+K G
Sbjct: 384 SDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSG 436
BLAST of CmaCh16G009330 vs. ExPASy Swiss-Prot
Match:
Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)
HSP 1 Score: 253.4 bits (646), Expect = 3.5e-66
Identity = 143/364 (39.29%), Postives = 197/364 (54.12%), Query Frame = 0
Query: 2 DSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLDI 61
D +K AW+EAC V+ P +G +L+ + LEGPCK I +++
Sbjct: 44 DLSKPFLDAWKEACASVTPSTVVIP------------KGTYLLSKVNLEGPCKAPIEINV 103
Query: 62 KGELLAPVAKNFSIGEYWLSIYQVDNFFVDGPRSLNGGGSSAWSSNT-------SKRPIV 121
+G + AP + W+ Y V+NF + G +G GS A+ NT SK P+
Sbjct: 104 QGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLPVN 163
Query: 122 TR--------IAKITSSNSKLFHFAVHGCRDVT------------PNTDGIHVSNSSGVN 181
R I ITS +SKLFH V C+++T PNTDGIH+ S GVN
Sbjct: 164 IRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVN 223
Query: 182 IMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDSTFV 241
I+ S I TGDDCIS+G G++ + I I CGPGHGISIGSLGK+ NEE V + + + T
Sbjct: 224 IIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTIT 283
Query: 242 GTDNGVRIKTWSSSHPSFVTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQIRD 301
T NG RIKTW H V++I F ++ M +V +P++IDQ+YC K S+V++ +
Sbjct: 284 NTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESKVKLSN 343
Query: 302 VRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNGGGQPTSICHNVKGSAFGKQL 339
+ ++ IRGTSA A+ F CS PC+ + L DI++ NG TS C NVK GK
Sbjct: 344 ISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAEPATSQCLNVKPITIGKLN 395
BLAST of CmaCh16G009330 vs. TAIR 10
Match:
AT3G07850.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 253.4 bits (646), Expect = 2.5e-67
Identity = 143/367 (38.96%), Postives = 203/367 (55.31%), Query Frame = 0
Query: 2 DSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLDI 61
D + A ++AW+EAC G + P +G ++V L +GPCKG + L++
Sbjct: 84 DDSAAFAAAWKEACA--AGSTITVP------------KGEYMVESLEFKGPCKGPVTLEL 143
Query: 62 KGELLAP-VAKNFSIGEYWLSIYQVDNFFVDGPRSL-NGGGSSAWSSNTSKR-------P 121
G AP K W+ + +F ++G +++ +G GS AW +N + P
Sbjct: 144 NGNFKAPATVKTTKPHAGWIDFENIADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLP 203
Query: 122 IVTR--------IAKITSSNSKLFHFAVHGCRDVT------------PNTDGIHVSNSSG 181
I R I ITS+NSKLFH + C+++T NTDGIH+ S+G
Sbjct: 204 INIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNG 263
Query: 182 VNIMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDST 241
VN++ + I TGDDC+S+G G+ + + N+ CGPGHGISIGSLG+YPNE+ V V VR
Sbjct: 264 VNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCL 323
Query: 242 FVGTDNGVRIKTWSSSHPSFVTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQI 301
TDNGVRIKTW S P + I+F ++ M +V P++IDQ+YC S+V++
Sbjct: 324 IKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKL 383
Query: 302 RDVRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNG-GGQPTSICHNVKGSAFG 339
DV +GI+GTSAT+ AV CS+ PC I L DINL NG G S C N+K G
Sbjct: 384 SDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSG 436
BLAST of CmaCh16G009330 vs. TAIR 10
Match:
AT3G14040.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 251.5 bits (641), Expect = 9.5e-67
Identity = 143/367 (38.96%), Postives = 202/367 (55.04%), Query Frame = 0
Query: 2 DSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLDI 61
D + A ++AW+EAC G + P +G +LV L +GPCKG + L++
Sbjct: 85 DDSAAFAAAWKEACA--AGSTITVP------------KGEYLVESLEFKGPCKGPVTLEL 144
Query: 62 KGELLAP-VAKNFSIGEYWLSIYQVDNFFVDGPRSL-NGGGSSAWSSNTSKR-------P 121
G AP K W+ + +F ++G +++ +G GS AW +N + P
Sbjct: 145 NGNFKAPATVKTTKPHAGWIDFENLADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLP 204
Query: 122 IVTR--------IAKITSSNSKLFHFAVHGCRDVT------------PNTDGIHVSNSSG 181
I R I ITS+NSKLFH + C+++T NTDGIH+ S+G
Sbjct: 205 INIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLTDIGIDAPPESLNTDGIHIGRSNG 264
Query: 182 VNIMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDST 241
VN++ + I TGDDC+S+G G+ + + N+ CGPGHGISIGSLG+YPNE+ V V VR
Sbjct: 265 VNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCL 324
Query: 242 FVGTDNGVRIKTWSSSHPSFVTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQI 301
TDNGVRIKTW S P + I+F ++ M +V P++IDQ+YC S+V++
Sbjct: 325 IKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKL 384
Query: 302 RDVRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNG-GGQPTSICHNVKGSAFG 339
DV + I+GTSAT+ AV CS+ PC I L DINL NG G S C N+K G
Sbjct: 385 SDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILSG 437
BLAST of CmaCh16G009330 vs. TAIR 10
Match:
AT2G43890.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 248.4 bits (633), Expect = 8.0e-66
Identity = 139/364 (38.19%), Postives = 196/364 (53.85%), Query Frame = 0
Query: 2 DSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLDI 61
DS KA AW+ AC V P G FL+ P+ GPC+ I I
Sbjct: 43 DSTKAFLGAWQAACRSAAAVTVTVP------------RGSFLLKPVEFRGPCRSRITFQI 102
Query: 62 KGELLAPV-AKNFSIGEYWLSIYQVDNFFVDGPRSLNGGGSSAWSSNTSKR--PIVTR-- 121
G ++AP + YW+ +V+ + G +L+ G+S W+ S + P+ R
Sbjct: 103 YGTIVAPSDYRGLGNSGYWILFVKVNRISIIG-GTLDARGASFWACRKSGKSCPVGARSM 162
Query: 122 ---------IAKITSSNSKLFHFAVHGCRDV------------TPNTDGIHVSNSSGVNI 181
++ +TS NS+ H ++ C +V +PNTDG+HV S+GV +
Sbjct: 163 TFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKVKLVAPDQSPNTDGLHVQGSAGVTV 222
Query: 182 MHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDSTFVG 241
TGDDCIS+GPG+R + ++ ++CGPGHGISIGSLG+ NE V ++ + +S F G
Sbjct: 223 TDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRDANEAGVENITLINSVFSG 282
Query: 242 TDNGVRIKTWSSSHPSFVTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQIRDV 301
+DNGVRIKTW+ FV ++F NL MK+V+NP+I+DQ YC S V+I V
Sbjct: 283 SDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCPSNQGCPKQGSGVKISQV 342
Query: 302 RYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNGGGQPTSICHNVKGSAFGKQLP 340
Y I+GTS TQ A+ F+CS+ PC+ I L DI L+FN G TS C N+KG G +P
Sbjct: 343 VYRNIQGTSRTQQALTFDCSRSNPCQAIRLHDIKLTFN-GRSATSTCKNIKGVKAGVVMP 392
BLAST of CmaCh16G009330 vs. TAIR 10
Match:
AT1G17150.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 240.4 bits (612), Expect = 2.2e-63
Identity = 142/368 (38.59%), Postives = 206/368 (55.98%), Query Frame = 0
Query: 1 MDSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLD 60
MD+ A ++AW++AC NG + P+ G F + + GPC G I
Sbjct: 46 MDNTNAFTNAWKDACRWNGPSKMYIPL------------GTFYLGGVTFVGPCDGKISFV 105
Query: 61 IKGELLAPVAKNFSIGEYWLSIYQVDNFFVDGPRSLNGGGSSAWS-------SNTSKRPI 120
I G LLAP + E W++ ++ V G +L+G G +WS +N K I
Sbjct: 106 IDGTLLAPPNNDDIKKEIWINFRYINYLTVFGDGTLDGQGKKSWSLIDCQKDNNCPKLAI 165
Query: 121 --------VTRIAKITSSNSK--------LFHFAVHGCRDV----TPNTDGIHVSNSSGV 180
+ + ITS NSK + HF++ + +PNTDGI ++ SS +
Sbjct: 166 NMGFDFVKNSSMNGITSLNSKAGHFNFLSVDHFSITRVNIIAPSNSPNTDGIKIALSSNM 225
Query: 181 NIMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDSTF 240
I ++ I TGDDCI++ G+ +I N+ CGPGHGISIGSLGK +E++V+ ++VR+S F
Sbjct: 226 QISNTHISTGDDCIAMLSGNTNFDIYNVKCGPGHGISIGSLGKNKDEKNVNGLMVRNSVF 285
Query: 241 VGTDNGVRIKTWSSSHPSF-VTKIVFLNLEMKDVRNPMIIDQKYCLDCSRDKMSTSRVQI 300
GT NG+RIKTW SS + + +V+ NL+M +V NP+ IDQKYC M S +QI
Sbjct: 286 TGTTNGIRIKTWESSASTIRIINLVYENLQMINVENPIGIDQKYCPYPPCSNMGDSHIQI 345
Query: 301 RDVRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNG-GGQPTSICHNVKGSAFG 340
R+V + I GTS + AV F+CS+ FPC+ + L DINL+ +G G +++C NV GSA G
Sbjct: 346 RNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLIDINLTHHGVDGPASALCENVDGSATG 401
BLAST of CmaCh16G009330 vs. TAIR 10
Match:
AT2G15450.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 240.0 bits (611), Expect = 2.8e-63
Identity = 143/370 (38.65%), Postives = 202/370 (54.59%), Query Frame = 0
Query: 2 DSAKALSSAWREACGHNGGGVVLEPIVESKYSVEQVGEGRFLVLPLVLEGPCKGSIGLDI 61
D+A A +S W AC G S V +G F + + GPCK I I
Sbjct: 45 DNANAFTSIWSRACKRISGS-----------SKIYVPKGTFYLGGVEFVGPCKNPIEFII 104
Query: 62 KGELLAPVAKNFSIGEYWLSIYQVDNFFVDGPRSLNGGGSSAW-------SSNTSKRPIV 121
G LLAP + + W++ ++N + G +L+G G +W + N K +
Sbjct: 105 DGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCPKLAMT 164
Query: 122 --------TRIAKITSSNSKLFH---FAVH--GCRDVT-------PNTDGIHVSNSSGVN 181
+ I ITS NSK+ H F+VH VT PNTDGI + + S +
Sbjct: 165 MGFAFVNNSNIKDITSLNSKMGHFNFFSVHHFNITGVTITAPGDSPNTDGIKMGSCSNIQ 224
Query: 182 IMHSVIDTGDDCISLGPGSRFINITNIHCGPGHGISIGSLGKYPNEEDVSDVLVRDSTFV 241
I + I TGDDCI++ G+ +NI+N++CGPGHGIS+GSLGK +E+DV D++VRD F
Sbjct: 225 ISDTNIGTGDDCIAILSGTTNLNISNVNCGPGHGISVGSLGKNKDEKDVKDLIVRDVIFN 284
Query: 242 GTDNGVRIKTW-SSSHPSFVTKIVFLNLEMKDVRNPMIIDQKYC--LDCSRDKMSTSRVQ 301
GT +G+RIK W SS+ V+ V+ N++M DV P+ IDQKYC C ++ S VQ
Sbjct: 285 GTSDGIRIKNWESSASKILVSNFVYENIQMIDVGKPINIDQKYCPHPPCEHERKGESHVQ 344
Query: 302 IRDVRYEGIRGTSATQAAVNFECSQVFPCEGIVLQDINLSFNG--GGQPTSICHNVKGSA 340
I++++ + I GTS + AVN +CS++FPC+ + L DIN+ NG G TS+C NV G A
Sbjct: 345 IQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQNGVKDGSSTSVCENVDGFA 403
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P24548 | 8.6e-73 | 40.71 | Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1 | [more] |
Q6H9K0 | 1.2e-71 | 40.66 | Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S... | [more] |
P35339 | 2.2e-68 | 39.44 | Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1 | [more] |
P49063 | 3.5e-66 | 38.96 | Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana OX=3702 GN=At3g07850 ... | [more] |
Q39766 | 3.5e-66 | 39.29 | Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1 | [more] |