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CmaCh16G006430 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGCTGCAGAGTCGAATGGCCGCTGGTGCGGCTTGTAAACGGGTGGGGCAATCGTTAGCCAATTCAGGTTTTCAAAGGTTTGGAGTCCCGAAGGCGTCTTCGTTTGAAAGCGCAATTTCCGACCATTCTGCAAATAGTTCATCGGCGGCATCCATCTCCTTGATTTCTCGGTATAGGCAGATCTCTCAGCTTGCGAAATCTAACGGGAAGCGATTGTTTCTAGTCGACACTTTAGCCCTAGTAATTTCGCTCTCTTTATTCTTTGCCTTTTCTCGGTTTTGTAACATTGTTCTTCGATTTTTATCAATCGCTTGCATTATAATCCACCATGGGGGTGGAATGAGGAAGTTAAGAATTTATGCACTCTCATGAGGGCTGCTTGAAAGTGATATGATTCCTTTTCTTTCAGGTTAGGAAATTGGAGGGTCAAGGGGTGCCCTCAAATCAAGCTGAGGCAATAACAGCTGCCATTACTGAAGTGTTGAATGATAGCTTGGAAAATATATCTCATTCATTTGTTTCAAAGGGAGAGATGCAGAAAGTGAGTTTTTAAGTACTTTACTTTTACATGTTTTCTATTCAGCTAATGTCGGTGTAGTTCAATGATGACGAAAAGCTAAAGTTTTTGGTGGTACGAGCGTGTATAACATCTATCATTTTACCTTCTTTTGTATTGTTTGCGTCCTACTGTCCTTTAAATGGATATCTTTACTATATGTTTGTAGGTTGAAATGATCCAGGATTCAAATTTGTCAAAATTCAAATCTGAAGTTCAAAGTTCACAGGTACCAAATTTGTAGACTTGCCCTATCCTAGTTTACTTTCTTGGTCTGGTTAGATGATGGTATCTATGTATAATACTCCCTAATTTGTTTGGTTTAGCAACAAACTAAAGAGGGAAACCTTAAATAAAAATGAGTATTTAGTTTCCATTGGAGTCCTGTATCATAATATACTCAAGAATGTTGTTGCACTTCTTGAGCAGAAAAGAAATATTCCAGACCGATGTGATGATCTACACTCCGAATTCCTGCTTTTTTGCAATACGTGAAATAATTAAGTTCGATTAACACTTGAACTACCATGAGTTGGTTAAGTAGTCAAAGCGACAACCATAAACTTGTATGTTTTTTAGGTTATGGGATCAATTCTTAGTGTCACTCATTTCAAGATGCCAAATGACTTACTAATATCATGGGTCGTGACCAAATGTTGCGTATTTTGGATAATGTGGGTGGGGTGGGTGGGAGGACGAAGGTGTCTTCGGGCATGGGAGTTTTATACAGCATCTGGCTGAATTCTTGATTACTGAACTTGCTAGTGAAAATATAGCACTTACGGGTCTGCAAACTATGATGGTGTTTGCACTGCTGGGAAATTTCATATTTTTGTACACTATGGACGTGAAGCTCCCATATGCTATTGGAAGGAGTTTTCTGAAAAGTTTCTGATCCATTTCCTGCTAATTTACTTCGCAAGATGTTCCTTTACAATGTTGGATTGTTTGTTTATGTCTCTGACCATTGGATTGAACACATGGTATGTAGGGGCACCATTTTTCTTTATTGGGACACGAGACAGAAAAACTTCGAAATGATATCGAGAAGATGCGTAGTGAGTTGAGGTTTGTGTTACCGTACATCAGTTTTTATGAAATGTATACTAGCTTCATATTTCAACATTAACTTGTTCTCTCTTGAATTAATCTTATTTGTGCAAAGACCTTTAACTATGGTGCAGGTATGAAATCGACAAAGTCACAGCTGGACAGCGATTGGATTTGAATCTTGAAAGAGGGTAAGTATACTTTTTCACGTAAAAAAAAGAGTACATTTTGGTTTGATTTGAGCTTTGCTTACAAATTCCATTGTTCACAAGTGCAGGAGGATACGGGATGAGCTAGCTAATCAGAATGCTGAAACAACTAACCTGACGAATAAACTCGATCGGGTAAGACCAACCTCCTGAAGAGAATGTTGGACAATTTTAGATAAAGTTTCTTAGTTTAGATAAGCAAATTAACATACAAATTATAGACTTAAAGAGACTTTAAAACTCATTGAAACTGTGTTCTACTTGTTCTAGATAGAAAAACAATAGTCTTGGGCTGTGTTAGAAGAACAATTCTTTGAGTTTTTTCTGCTGTGTGAGTTGGGGTAGGCTGCAAAAAACCCGAGTGCAGCACGGGATTCTCCCAAATATCGCTCTTCCGAGTTTTAACTCGTCTTCCTAAAACTTTTCAGGAAATTCATGGTCTGAGGGCACAGCTGGAAGCTGCCAAATACGATGTAATAAAATACTGCATTGGAACCCTTGTTTCCATCTCTGCTGTTGGTCTAGCTGTGTTGCGCATCTTAATGTAAACAGTTCAAAATCATGAACTGGTTTAGGGGATTGATCAAGAATTTGACAAGATTATTGTTTACTTTCAGTTTTTTTTTGTTCTTTAACCTTCTTTTAGAGAGGATTCTGGGAAGTTGAGCTATTTTCTCCGAGAGAGTTTCCATGTTTTATTTGTGTCGTCATGGAAATGGACCTCGTTGTAGCCATTTGAATTGTTCTCATTTGAGAATATGATTATAGATAGTGATAATAAACATTGTTGTAATTTTATGTGATCAGGGGATGTTCAACTCATTAGTATCCATGTTCTTGTGCCTTTTC ATGTTGCTGCAGAGTCGAATGGCCGCTGGTGCGGCTTGTAAACGGGTGGGGCAATCGTTAGCCAATTCAGGTTTTCAAAGGTTTGGAGTCCCGAAGGCGTCTTCGTTTGAAAGCGCAATTTCCGACCATTCTGCAAATAGTTCATCGGCGGCATCCATCTCCTTGATTTCTCGGTATAGGCAGATCTCTCAGCTTGCGAAATCTAACGGGAAGCGATTGTTTCTAGTCGACACTTTAGCCCTAGTTAGGAAATTGGAGGGTCAAGGGGTGCCCTCAAATCAAGCTGAGGCAATAACAGCTGCCATTACTGAAGTGTTGAATGATAGCTTGGAAAATATATCTCATTCATTTGTTTCAAAGGGAGAGATGCAGAAAGTTGAAATGATCCAGGATTCAAATTTGTCAAAATTCAAATCTGAAGTTCAAAGTTCACAGGGGCACCATTTTTCTTTATTGGGACACGAGACAGAAAAACTTCGAAATGATATCGAGAAGATGCGTAGTGAGTTGAGGTATGAAATCGACAAAGTCACAGCTGGACAGCGATTGGATTTGAATCTTGAAAGAGGGAGGATACGGGATGAGCTAGCTAATCAGAATGCTGAAACAACTAACCTGACGAATAAACTCGATCGGGAAATTCATGGTCTGAGGGCACAGCTGGAAGCTGCCAAATACGATGTAATAAAATACTGCATTGGAACCCTTGTTTCCATCTCTGCTGTTGGTCTAGCTGTGTTGCGCATCTTAATGTAAACAGTTCAAAATCATGAACTGGTTTAGGGGATTGATCAAGAATTTGACAAGATTATTGTTTACTTTCAGTTTTTTTTTGTTCTTTAACCTTCTTTTAGAGAGGATTCTGGGAAGTTGAGCTATTTTCTCCGAGAGAGTTTCCATGTTTTATTTGTGTCGTCATGGAAATGGACCTCGTTGTAGCCATTTGAATTGTTCTCATTTGAGAATATGATTATAGATAGTGATAATAAACATTGTTGTAATTTTATGTGATCAGGGGATGTTCAACTCATTAGTATCCATGTTCTTGTGCCTTTTC ATGTTGCTGCAGAGTCGAATGGCCGCTGGTGCGGCTTGTAAACGGGTGGGGCAATCGTTAGCCAATTCAGGTTTTCAAAGGTTTGGAGTCCCGAAGGCGTCTTCGTTTGAAAGCGCAATTTCCGACCATTCTGCAAATAGTTCATCGGCGGCATCCATCTCCTTGATTTCTCGGTATAGGCAGATCTCTCAGCTTGCGAAATCTAACGGGAAGCGATTGTTTCTAGTCGACACTTTAGCCCTAGTTAGGAAATTGGAGGGTCAAGGGGTGCCCTCAAATCAAGCTGAGGCAATAACAGCTGCCATTACTGAAGTGTTGAATGATAGCTTGGAAAATATATCTCATTCATTTGTTTCAAAGGGAGAGATGCAGAAAGTTGAAATGATCCAGGATTCAAATTTGTCAAAATTCAAATCTGAAGTTCAAAGTTCACAGGGGCACCATTTTTCTTTATTGGGACACGAGACAGAAAAACTTCGAAATGATATCGAGAAGATGCGTAGTGAGTTGAGGTATGAAATCGACAAAGTCACAGCTGGACAGCGATTGGATTTGAATCTTGAAAGAGGGAGGATACGGGATGAGCTAGCTAATCAGAATGCTGAAACAACTAACCTGACGAATAAACTCGATCGGGAAATTCATGGTCTGAGGGCACAGCTGGAAGCTGCCAAATACGATGTAATAAAATACTGCATTGGAACCCTTGTTTCCATCTCTGCTGTTGGTCTAGCTGTGTTGCGCATCTTAATGTAA MLLQSRMAAGAACKRVGQSLANSGFQRFGVPKASSFESAISDHSANSSSAASISLISRYRQISQLAKSNGKRLFLVDTLALVRKLEGQGVPSNQAEAITAAITEVLNDSLENISHSFVSKGEMQKVEMIQDSNLSKFKSEVQSSQGHHFSLLGHETEKLRNDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHGLRAQLEAAKYDVIKYCIGTLVSISAVGLAVLRILM Homology
BLAST of CmaCh16G006430 vs. ExPASy Swiss-Prot
Match: P43557 (Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FMP32 PE=1 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.4e-16 Identity = 46/166 (27.71%), Postives = 97/166 (58.43%), Query Frame = 0
BLAST of CmaCh16G006430 vs. ExPASy Swiss-Prot
Match: Q9GZT6 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Homo sapiens OX=9606 GN=CCDC90B PE=1 SV=2) HSP 1 Score: 79.3 bits (194), Expect = 6.7e-14 Identity = 54/196 (27.55%), Postives = 98/196 (50.00%), Query Frame = 0
BLAST of CmaCh16G006430 vs. ExPASy Swiss-Prot
Match: Q6DJ87 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Xenopus tropicalis OX=8364 GN=ccdc90b PE=2 SV=2) HSP 1 Score: 77.8 bits (190), Expect = 1.9e-13 Identity = 53/197 (26.90%), Postives = 98/197 (49.75%), Query Frame = 0
BLAST of CmaCh16G006430 vs. ExPASy Swiss-Prot
Match: O14042 (Protein fmp32, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fmp32 PE=3 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.5e-13 Identity = 48/175 (27.43%), Postives = 96/175 (54.86%), Query Frame = 0
BLAST of CmaCh16G006430 vs. ExPASy Swiss-Prot
Match: Q8C3X2 (Coiled-coil domain-containing protein 90B, mitochondrial OS=Mus musculus OX=10090 GN=Ccdc90b PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 3.3e-13 Identity = 51/196 (26.02%), Postives = 100/196 (51.02%), Query Frame = 0
BLAST of CmaCh16G006430 vs. TAIR 10
Match: AT2G16460.1 (Protein of unknown function (DUF1640) ) HSP 1 Score: 313.5 bits (802), Expect = 1.5e-85 Identity = 169/205 (82.44%), Postives = 185/205 (90.24%), Query Frame = 0
BLAST of CmaCh16G006430 vs. TAIR 10
Match: AT3G51090.1 (Protein of unknown function (DUF1640) ) HSP 1 Score: 290.4 bits (742), Expect = 1.4e-78 Identity = 167/235 (71.06%), Postives = 187/235 (79.57%), Query Frame = 0
BLAST of CmaCh16G006430 vs. TAIR 10
Match: AT2G16460.2 (Protein of unknown function (DUF1640) ) HSP 1 Score: 212.2 bits (539), Expect = 4.7e-55 Identity = 114/145 (78.62%), Postives = 127/145 (87.59%), Query Frame = 0
BLAST of CmaCh16G006430 vs. TAIR 10
Match: AT2G35090.1 (Protein of unknown function (DUF1640) ) HSP 1 Score: 65.5 bits (158), Expect = 7.1e-11 Identity = 55/200 (27.50%), Postives = 96/200 (48.00%), Query Frame = 0
BLAST of CmaCh16G006430 vs. TAIR 10
Match: AT2G35070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube development, pollen development; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1640) (TAIR:AT2G35090.1); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 3.9e-09 Identity = 53/196 (27.04%), Postives = 91/196 (46.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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