CmaCh16G001920 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G001920
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr16: 845274 .. 847156 (-)
RNA-Seq Expression	CmaCh16G001920
Synteny	CmaCh16G001920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTGGAGGGCCCCACAAAACGACAACGTGGCCCCGTCATCTTCGACACGACCACACGTGTCGTCACGCGCTTTATGCGCAATAGCTGTAAGCCACGTATTGTTGTGTCTTACGGCGAGGTGACTTTTGACATTTTTTCCTCCCTTATTATTATTATTCATTAAATAAAAACTTCGCCAGTTTCTAGTTTTTTCCGTTATTTTATTTTATTTAGAAGAACGGAATTAAGACGTAAAAACAACCAAATTCACTGGCTTCGACGCAGGCATGAATAATTAAATAATTAACTAATTTTAAATGCAGCTGAATATTAAATATATTTCCGCCATTAATACTTAACATTTCAAGATTAACAAAAAAATAAATAAATAAATATTTGATCCTAGTGTTAGATACCTGCTATCCTAGAGAAGTATGCGTGGTTAACACGCGCCACCTTCGCGCGTAAAGATGGATTCAGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGAGGAGTGTTCCCGGATTCAACAACCACGCATAGACCATCGAAAACAGGGGGTTCTCTATAAATAACCAAAGCCAATTGAATTTCTTCTCCTCGCTTCTTCCGCATCAAGATTTTTCCTCTCTGTTTTCGCTTCAATTTCGTTCTTGTTCTTCGCGATTCGGGTTCTTGTTAACTGCATTTCGCGACCTTTCTTTATCTCTCACAGGTTCTTCCCTCTCTTTCTGTTTCCATTCTTTGACCTTCTTCCCCTTTTCTAGTCGCTTTCTGTTTCTGATGCCCGCCGGCGTAATATCTGCCGCCTAAACCCAGAGCTTTTGTTGGGCTTTTCACGTTTTCACGTTTATCTGGTGCCTAAGAACTCTTTCCCCCTTCTAATCGATTTTTTTGTGGCCTTTTGAAGGTGAAAATTGCTCGACTACTTTTCTTTCCTCTTTTGATGAATTCTCTTTTGTTGTTTATTGGTTTTGAATCTGCATTTTACCGGGACCTGCTTGCATTTCGGTTTCGTTACAATTTTTCCCATTAGAGCTCTCTTCCGCAGGTTACTTCCTTGTATTCGTTTCTTAAATTGCTTCGGTTCATCGGGGTTTTCACTTGATGACGCAATATTTGTTATTAACCGTACGTTTGGTTTTTAAATGTTTGCGGATTTTCTGGGGTTTTAATCAATTGATACGTCTGTTTTACGTGTTTGAATGGATGATAGGCTTTTAGGTGTGGGAATGAATTCTGGTTTGACTTTGTTTATGGAATTCAAACAGGCTTTTCTGTTTGGGGTTTATGCAATTTCGATTCTCTACGAAATTTCCCTGAAAATTATTGATTGGTTCTTTCTTTAAATCAGATTTGATGGACACTGTTTCCGCCTTGTTTGCGTTTGAGTTTCTTGTTATTAAATTGATGGGACATTTATTACTTCATTGTCGCCAAACTTGATATTTGATATAATAATCGACCTCGATTCTTCACCCTCTTTCAATTGGGTTCATAGATTATGAACTGATTATTGTAGCCACAACTGTAAAAGCCATGTATATGCATTAATTGCCTGAACCAAGGTCTTGTGTTTAGTGTTTTACTGCGTCTATGGCCTTCGGGAAACTGAATCTTCATTTCTTTGTCCATTTGTTTATTTCTTTGCTTGCTTCTATGTAGCCCCATAATCTTCATTTCTTTTTGTATACTCTTTTTAAGCTCATCAACCAGTGCCTGCTCTGAAACTTCTTCTTTTTATGATGATTTTTCAGATGTTTTGTGCTTGATGAACTGTGTGCTAAGTGGTAGTGACAAGAAAACATTACAAAAGTTTCCATACACTTGA

mRNA sequence

ATGACGTGGAGGGCCCCACAAAACGACAACGTGGCCCCGTCATCTTCGACACGACCACACGTGTCGTCACGCGCTTTATGCGCAATAGCTGTAAGCCACATACCTGCTATCCTAGAGAAGTATGCGTGGTTAACACGCGCCACCTTCGCGCATGTTTTGTGCTTGATGAACTGTGTGCTAAGTGGTAGTGACAAGAAAACATTACAAAAGTTTCCATACACTTGA

Coding sequence (CDS)

ATGACGTGGAGGGCCCCACAAAACGACAACGTGGCCCCGTCATCTTCGACACGACCACACGTGTCGTCACGCGCTTTATGCGCAATAGCTGTAAGCCACATACCTGCTATCCTAGAGAAGTATGCGTGGTTAACACGCGCCACCTTCGCGCATGTTTTGTGCTTGATGAACTGTGTGCTAAGTGGTAGTGACAAGAAAACATTACAAAAGTTTCCATACACTTGA

Protein sequence

MTWRAPQNDNVAPSSSTRPHVSSRALCAIAVSHIPAILEKYAWLTRATFAHVLCLMNCVLSGSDKKTLQKFPYT

Homology

[Close]

BLAST of CmaCh16G001920 vs. ExPASy TrEMBL
Match: A0A0A0L9F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175680 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-04
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1  MTWRAPQNDNVAPSSSTRPHVSSRALCAIAVS 33
          MTWRAPQ DNVAPS+ST PHVSSRAL AIA S
Sbjct: 1  MTWRAPQRDNVAPSASTGPHVSSRALYAIAFS 32

[Close]

BLAST of CmaCh16G001920 vs. NCBI nr
Match: KAE8650428.1 (hypothetical protein Csa_010274, partial [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1  MTWRAPQNDNVAPSSSTRPHVSSRALCAIAVS 33
          MTWRAPQ DNVAPS+ST PHVSSRAL AIA S
Sbjct: 1  MTWRAPQRDNVAPSASTGPHVSSRALYAIAFS 32

The following BLAST results are available for this feature:

BLAST of CmaCh16G001920 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G001920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9F7	1.9e-04	84.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175680 PE=4 SV=1	[more]

BLAST of CmaCh16G001920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650428.1	4.0e-04	84.38	hypothetical protein Csa_010274, partial [Cucumis sativus]	[more]

BLAST of CmaCh16G001920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G001920.1	CmaCh16G001920.1	mRNA