CmaCh16G001350 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G001350
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr16: 597497 .. 598698 (+)
RNA-Seq ExpressionCmaCh16G001350
SyntenyCmaCh16G001350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAGCCCATCGGAAAAGTGCATTTCATAATTCTTCTCCTTCTTCCAACTCCTGTCTGGTTCTTGATTTCGTATACTCCTACCCATGGAGTCGCACGTGCAATTCAGCGAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACCATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTGAGTTTAATGTTAGCGTCTTTTTGTCAGTCATTTTGCAGGTCTTTACGCCTTGTTTGGGTGCACGAATATAATGAACGCAAATAATAGGATTAGGGTTGGAGTAGTTCTTGGTTAACGTTAAAGGCGCATTATTTTCGTATATTTAGGTTTTTTTATTTATTTTATTTTTGACTCAAATGGACCGACCAACCAAACAGCGCCTAAACAACACGACTAAAGCGGGAATAGTGAATATTCCCTGTGAAGATATTTATGTGTGATTTATATATCACAATACTTTTTTTTTTTTTTTTTTTGTAATATTTTTTTGTTATTTATTTATTTTCTTTTTAATGACTTACGGCTATGATCCAGTAGGTACCAGAATGGACGGTAGATCTAGCAGGAGATCAAGACGGATACCATCTCTGCCGCACACTTCAATTCAAGATCAGGTCAGCGCAATATAAACATTACATTTCTTATTTCTTTCTTTTATTTTTCTCTACCAATAATAGAAATTATAAATATGTGCAATTCTTGTCTTTATTTCCTTTTAATCTTATCTTTTTCAATCAAAAGTATGCTCTTTTCGCGGCTTGTTTCAGCATTTGTTGTAATGCCACGTGGATATAAACTAATAAGTTATTTAGGTTTAATTAAATTTAAATACAAATTTTTCTCAAGTATTTGATATTTTAAACAATAATATAGATATTTATAGTTACATTATTAAAATAATAAAATGGCATGCTTATGTGGTAATGGCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCTTGTCACCTGTCAACTAATAAATATAATATTAATTATTATTATTATTTCAGCTACATTTTTTTTTTCCATTTAGTTTCTTCATTTAATCCTCGC

mRNA sequence

CCAAGCCCATCGGAAAAGTGCATTTCATAATTCTTCTCCTTCTTCCAACTCCTGTCTGGTTCTTGATTTCGTATACTCCTACCCATGGAGTCGCACGTGCAATTCAGCGAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACCATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTACCAGAATGGACGGTAGATCTAGCAGGAGATCAAGACGGATACCATCTCTGCCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCTTGTCACCTGTCAACTAATAAATATAATATTAATTATTATTATTATTTCAGCTACATTTTTTTTTTCCATTTAGTTTCTTCATTTAATCCTCGC

Coding sequence (CDS)

ATGGAGTCGCACGTGCAATTCAGCGAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACCATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTACCAGAATGGACGGTAGATCTAGCAGGAGATCAAGACGGATACCATCTCTGCCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCTTGTCACCTGTCAACTAA

Protein sequence

MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSPQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPVN
Homology
BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1EAV1 (uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 118/121 (97.52%), Postives = 121/121 (100.00%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1E5I2 (uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.3e-57
Identity = 118/122 (96.72%), Postives = 121/122 (99.18%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.5e-43
Identity = 98/123 (79.67%), Postives = 107/123 (86.99%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNH-RRRLRLDRHLSDTADSTLD 60
           MESHVQF+ET   WTNEKHMHFLNSMEASFVRSMF+NR H RRRLRLDRHL DT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPQKNRKKHSISG-TRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLS 120
           SPQK+RK H+ SG   +DGRSS RSR   SLPHTS QDQVVPQME+RAVEDEDERDHP+S
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PVN 122
           P+N
Sbjct: 147 PIN 149

BLAST of CmaCh16G001350 vs. NCBI nr
Match: XP_022984701.1 (uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima])

HSP 1 Score: 238.4 bits (607), Expect = 3.2e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

BLAST of CmaCh16G001350 vs. NCBI nr
Match: KAG7014778.1 (hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

BLAST of CmaCh16G001350 vs. NCBI nr
Match: XP_022923140.1 (uncharacterized protein LOC111430892 isoform X2 [Cucurbita moschata])

HSP 1 Score: 233.8 bits (595), Expect = 7.8e-58
Identity = 118/121 (97.52%), Postives = 121/121 (100.00%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

BLAST of CmaCh16G001350 vs. NCBI nr
Match: XP_022984699.1 (uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 7.8e-58
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

BLAST of CmaCh16G001350 vs. NCBI nr
Match: XP_023552559.1 (uncharacterized protein LOC111810184 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0

Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRR LRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRLLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           P KNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PHKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J6061.5e-59100.00uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JBA63.8e-5899.18uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1EAV13.8e-5897.52uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1E5I29.3e-5796.72uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1CHV74.5e-4379.67uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
XP_022984701.13.2e-59100.00uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima][more]
KAG7014778.12.7e-5898.35hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022923140.17.8e-5897.52uncharacterized protein LOC111430892 isoform X2 [Cucurbita moschata][more]
XP_022984699.17.8e-5899.18uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima][more]
XP_023552559.11.3e-5797.52uncharacterized protein LOC111810184 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..121
NoneNo IPR availablePANTHERPTHR33676:SF15SUBFAMILY NOT NAMEDcoord: 1..115
IPR044678Cold-regulated protein 27/28PANTHERPTHR33676COLD REGULATED PROTEIN 27coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G001350.1CmaCh16G001350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042752 regulation of circadian rhythm
biological_process GO:0009409 response to cold