CmaCh16G001350 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G001350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr16: 597497 .. 598698 (+)
RNA-Seq Expression	CmaCh16G001350
Synteny	CmaCh16G001350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGCCCATCGGAAAAGTGCATTTCATAATTCTTCTCCTTCTTCCAACTCCTGTCTGGTTCTTGATTTCGTATACTCCTACCCATGGAGTCGCACGTGCAATTCAGCGAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACCATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTGAGTTTAATGTTAGCGTCTTTTTGTCAGTCATTTTGCAGGTCTTTACGCCTTGTTTGGGTGCACGAATATAATGAACGCAAATAATAGGATTAGGGTTGGAGTAGTTCTTGGTTAACGTTAAAGGCGCATTATTTTCGTATATTTAGGTTTTTTTATTTATTTTATTTTTGACTCAAATGGACCGACCAACCAAACAGCGCCTAAACAACACGACTAAAGCGGGAATAGTGAATATTCCCTGTGAAGATATTTATGTGTGATTTATATATCACAATACTTTTTTTTTTTTTTTTTTTGTAATATTTTTTTGTTATTTATTTATTTTCTTTTTAATGACTTACGGCTATGATCCAGTAGGTACCAGAATGGACGGTAGATCTAGCAGGAGATCAAGACGGATACCATCTCTGCCGCACACTTCAATTCAAGATCAGGTCAGCGCAATATAAACATTACATTTCTTATTTCTTTCTTTTATTTTTCTCTACCAATAATAGAAATTATAAATATGTGCAATTCTTGTCTTTATTTCCTTTTAATCTTATCTTTTTCAATCAAAAGTATGCTCTTTTCGCGGCTTGTTTCAGCATTTGTTGTAATGCCACGTGGATATAAACTAATAAGTTATTTAGGTTTAATTAAATTTAAATACAAATTTTTCTCAAGTATTTGATATTTTAAACAATAATATAGATATTTATAGTTACATTATTAAAATAATAAAATGGCATGCTTATGTGGTAATGGCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCTTGTCACCTGTCAACTAATAAATATAATATTAATTATTATTATTATTTCAGCTACATTTTTTTTTTCCATTTAGTTTCTTCATTTAATCCTCGC

mRNA sequence

CCAAGCCCATCGGAAAAGTGCATTTCATAATTCTTCTCCTTCTTCCAACTCCTGTCTGGTTCTTGATTTCGTATACTCCTACCCATGGAGTCGCACGTGCAATTCAGCGAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACCATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTACCAGAATGGACGGTAGATCTAGCAGGAGATCAAGACGGATACCATCTCTGCCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCTTGTCACCTGTCAACTAATAAATATAATATTAATTATTATTATTATTTCAGCTACATTTTTTTTTTCCATTTAGTTTCTTCATTTAATCCTCGC

Coding sequence (CDS)

ATGGAGTCGCACGTGCAATTCAGCGAAACGAAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTGCGATCAATGTTCAAAAATCGGAACCATCGCCGCCGTCTACGGCTGGACCGCCACCTGTCGGACACCGCAGACTCAACCCTAGATTCGCCTCAGAAGAACAGAAAAAAGCATTCCATCTCCGGTACCAGAATGGACGGTAGATCTAGCAGGAGATCAAGACGGATACCATCTCTGCCGCACACTTCAATTCAAGATCAGGTGGTCCCACAGATGGAAGAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCTTGTCACCTGTCAACTAA

Protein sequence

MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSPQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPVN

Homology

[Close]

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1EAV1 (uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 118/121 (97.52%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1E5I2 (uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.3e-57
Identity = 118/122 (96.72%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.5e-43
Identity = 98/123 (79.67%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNH-RRRLRLDRHLSDTADSTLD 60
           MESHVQF+ET   WTNEKHMHFLNSMEASFVRSMF+NR H RRRLRLDRHL DT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPQKNRKKHSISG-TRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLS 120
           SPQK+RK H+ SG   +DGRSS RSR   SLPHTS QDQVVPQME+RAVEDEDERDHP+S
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PVN 122
           P+N
Sbjct: 147 PIN 149

[Close]

BLAST of CmaCh16G001350 vs. NCBI nr
Match: XP_022984701.1 (uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima])

HSP 1 Score: 238.4 bits (607), Expect = 3.2e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of CmaCh16G001350 vs. NCBI nr
Match: KAG7014778.1 (hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of CmaCh16G001350 vs. NCBI nr
Match: XP_022923140.1 (uncharacterized protein LOC111430892 isoform X2 [Cucurbita moschata])

HSP 1 Score: 233.8 bits (595), Expect = 7.8e-58
Identity = 118/121 (97.52%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRN+RRRL+LDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

[Close]

BLAST of CmaCh16G001350 vs. NCBI nr
Match: XP_022984699.1 (uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 7.8e-58
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSIS-GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120
           PQKNRKKHSIS GTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 VN 122
           VN
Sbjct: 121 VN 122

[Close]

BLAST of CmaCh16G001350 vs. NCBI nr
Match: XP_023552559.1 (uncharacterized protein LOC111810184 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60
           MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRR LRLDRHLSDTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRLLRLDRHLSDTADSTLDS 60

Query: 61  PQKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSPV 120
           P KNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHP+SPV
Sbjct: 61  PHKNRKKHSISGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPMSPV 120

Query: 121 N 122
           N
Sbjct: 121 N 121

The following BLAST results are available for this feature:

BLAST of CmaCh16G001350 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G001350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J606	1.5e-59	100.00	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JBA6	3.8e-58	99.18	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EAV1	3.8e-58	97.52	uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E5I2	9.3e-57	96.72	uncharacterized protein LOC111430892 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CHV7	4.5e-43	79.67	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of CmaCh16G001350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984701.1	3.2e-59	100.00	uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima]	[more]
KAG7014778.1	2.7e-58	98.35	hypothetical protein SDJN02_22407 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022923140.1	7.8e-58	97.52	uncharacterized protein LOC111430892 isoform X2 [Cucurbita moschata]	[more]
XP_022984699.1	7.8e-58	99.18	uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima]	[more]
XP_023552559.1	1.3e-57	97.52	uncharacterized protein LOC111810184 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh16G001350 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..121
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 1..115
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G001350.1	CmaCh16G001350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold