CmaCh14G004630 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G004630
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionribosome production factor 1-like
LocationCma_Chr14: 2251441 .. 2253635 (-)
RNA-Seq ExpressionCmaCh14G004630
SyntenyCmaCh14G004630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGAGTAGAAGTGTGGGGCGGCGGCGACGGTGATGGTGGTGGGACACGGCGGCGGATATGCAGTCTCCGATGGATCAAAATGGAATTGGAATTTGTCTGTTCTAGGGTTTCAGAAAGGAAGAGAAGAGCGTATGAAAATTCTGATTTCGGCAAGATGGTTCGTCAGAACCAGACGAACGTTTTTCTCTCTCTTCTTCTTTCTTGTTTTTGTTTGTTTTTTATTTTTTATTTATTTAATTAAATACGAAAACAATAAATAAATAAGAGACGGAGTTTTAGTTGTGCAGCGGATAGATCGCGTGCAGAGGACGGCGACATTTATATGATCTTTCGGGTCACCACGTCGGCCCACCACGTTACCCGACCCGACTACATAAATGTCCTCTCTCTCCCCCAAATTACAAATTTAGCTTCTAAATTTTTAACTAATTAAATAAAAATCTTATTACGTTGCACAGACATTATTAAATCTTAGTTTGTGTTTACGGTCGAGATATCCCGCCTCTCCAAATCGGACTGTCGGACTTAAAGGTGCGAAAGCATGGGGAGCGAACGAGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGCGTTCGTCCTTGGTTTACGTGGATCAGAGACCTAGCTAACGCGTGAAACACTCTGCCCGAGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGATGGGGGCTCCTCTCATCAGGCTTTTATCGGAGAATCTCCACTTACTATTTCTCTTAATATCCTCTCTTCGTCACACACTGAAGGTTTGATTCAATTCAACTCTAGCCACTAGATTCACTATAAATAGTTTGTTTGGCTGTTGAATAAACTTCAAGTTTGGACATAACTCAACTATAATAGTCACTCGATTCACTATAATAGTTTATTTAAATGCTCGACAAACCTCAAGTTAAGACTCAGCTAGACTCAGTATAGTAGTTTATTCTACTGCTTCTCGACGTATTTAGTTTAACTTCTTGTAAAATTTTATTCACAAAAATTTAAAACTCAAAGTTTTATTTATTTATTTTTTTAATTTTTAATGGTTTAATTTAAATTAAGAGTATGAATTATATTTTTTAAAACATTTTTAGAAATTAAATGGTATTTTTTAAAACCTCTTCAAAAGTAAGGATATTATTGAAGCTTTTATACAACATAAATTTAATTATTTTAATACTTTAAATTATGTGAGATATATTTATTCTTAAATATAAAATTAAAATATTTCGAACGATTCTCATTGATGTATAGATTAAGTTGACATAGCTAAGCTATTGGTTATATTAAAGTTAGTCGAGAAATTTATCTAAAAAATAAAATAAAACAAATATTATGGTTTAAAAATCATTATTTTTGGTTTAGAAATTTAACTTAGAAATTGAAAATGTAAGATAAATATCAAATTTCCATCTTGATCTTCAAAATTATAAATTGTTTATTGATTATTCAAAAACCATCCGTTTCTATCGTTTAATTGAAAATATGGTCGAAATAATTTAAAATTTTATTATTTAAAGAAATATTAATTAATTTAACTATCCTTTCAGTAAGGCCTATTAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCAGGTTCGAAACCTGCATGGGCCATTTTGATTTTGCTTTATTTTATTTATTCAAAGAAAAAAGATGTGCATATTAAGATGAATAACATAAGCTCGCACATTTGAGAGCATGGCCTAGGTTCGAAACCTGCATGGGCCATTATCTTTCTTCTATTTATTTTATTTTTTTCCGATTCTCGGAGATTCTTTCTCTTACATTTTTATTCCTTCTTTAGCCTCCTCCTATCAAGATTCGACGCACCATTGATATCACCAGGGAGGTTGATGAGACTGTTTGCAAACCTAATGACGAAGAGGTGCTTCTTCCTCCTCATCTTCTTCTTCAACTTAATCTTTATTATACGAAATTTTTGTAGCTTTTGTTTAAGTATATCTATGTTTTTACTTTATAGTTCTTTTCATCTACAGTTCGTACTTGTAATGTTTCCAGTTTCGATTCTCTGCAACTATTTTCTGGAAATGATGCTGATGAATTTAGCTCCATCTTAGAGCGAATCACTTCGTCAAAAGTTCTAATTACAACTTCTCGTTTTGATTCTTCCGTAGGATTCTTCATATTACTAGTTTATGGAAACTGA

mRNA sequence

ATGGTTGGAGTAGAAGTGTGGGGCGGCGGCGACGGTGATGGTGGTGGGACACGGCGGCGGATATGCAGTCTCCGATGGATCAAAATGGAATTGGAATTTGTCTGTTCTAGGGTTTCAGAAAGGAAGAGAAGAGCGTATGAAAATTCTGATTTCGGCAAGATGCCTCCTCCTATCAAGATTCGACGCACCATTGATATCACCAGGGAGGTTGATGAGACTGTTTGCAAACCTAATGACGAAGAGTTCTTTTCATCTACAGTTCGTACTTGTAATGTTTCCAGTTTCGATTCTCTGCAACTATTTTCTGGAAATGATGCTGATGAATTTAGCTCCATCTTAGAGCGAATCACTTCGTCAAAAGTTCTAATTACAACTTCTCGTTTTGATTCTTCCGTAGGATTCTTCATATTACTAGTTTATGGAAACTGA

Coding sequence (CDS)

ATGGTTGGAGTAGAAGTGTGGGGCGGCGGCGACGGTGATGGTGGTGGGACACGGCGGCGGATATGCAGTCTCCGATGGATCAAAATGGAATTGGAATTTGTCTGTTCTAGGGTTTCAGAAAGGAAGAGAAGAGCGTATGAAAATTCTGATTTCGGCAAGATGCCTCCTCCTATCAAGATTCGACGCACCATTGATATCACCAGGGAGGTTGATGAGACTGTTTGCAAACCTAATGACGAAGAGTTCTTTTCATCTACAGTTCGTACTTGTAATGTTTCCAGTTTCGATTCTCTGCAACTATTTTCTGGAAATGATGCTGATGAATTTAGCTCCATCTTAGAGCGAATCACTTCGTCAAAAGTTCTAATTACAACTTCTCGTTTTGATTCTTCCGTAGGATTCTTCATATTACTAGTTTATGGAAACTGA

Protein sequence

MVGVEVWGGGDGDGGGTRRRICSLRWIKMELEFVCSRVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFDSLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVGFFILLVYGN
Homology
[Close]
BLAST of CmaCh14G004630 vs. ExPASy Swiss-Prot
Match: Q6IQU6 (Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.6e-04
Identity = 32/101 (31.68%), Postives = 48/101 (47.52%), Query Frame = 0 

Query: 26  WIKMELEFVCSRVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSS 85
           ++K++ E    R+  +K++  E        PP ++ +TI+  R  DET   P DEE    
Sbjct: 48  FLKLKEEKRKKRMELKKKKKKERKALDDKAPPKEVPKTIENQRIYDETTVNPEDEEV--- 107

Query: 86  TVRTCNVSSFDSLQLFSGNDADEFSSILERITSSKVLITTS 127
                   +FD          DEFS+   R+T+ KVLITTS
Sbjct: 108 --------AFD-------EGTDEFSAYFNRLTNPKVLITTS 130

[Close]
BLAST of CmaCh14G004630 vs. ExPASy TrEMBL
Match: A0A6J1DT48 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 0 

Query: 37  RVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFD 96
           R   R     +  + G+ PPP  I RTI+ TREVDETVCKP+DEE               
Sbjct: 40  RAKARDASEKQALELGEEPPPRMIPRTIENTREVDETVCKPDDEE--------------- 99

Query: 97  SLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
              LF+GNDADEFSSI++R T  KVLITT RF+SS+G
Sbjct: 100 ---LFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIG 118

[Close]
BLAST of CmaCh14G004630 vs. ExPASy TrEMBL
Match: A0A6J1DPH5 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.4e-13
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 0 

Query: 37  RVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFD 96
           R   R     +  + G+ PPP  I RTI+ TREVDETVCKP+DEE               
Sbjct: 40  RAKARDASEKQALELGEEPPPRMIPRTIENTREVDETVCKPDDEE--------------- 99

Query: 97  SLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
              LF+GNDADEFSSI++R T  KVLITT RF+S++G
Sbjct: 100 ---LFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIG 118

[Close]
BLAST of CmaCh14G004630 vs. ExPASy TrEMBL
Match: A0A6J1I6C8 (ribosome production factor 1 OS=Cucurbita maxima OX=3661 GN=LOC111470043 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 0 

Query: 37  RVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFD 96
           R   R     +  + G+ PPP K  RTI+ TREVDETVCKP+DEE               
Sbjct: 39  RAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEE--------------- 98

Query: 97  SLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
              LF+GNDADEFSSI++R    KVLITT RF+SS+G
Sbjct: 99  ---LFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIG 117

[Close]
BLAST of CmaCh14G004630 vs. ExPASy TrEMBL
Match: A0A6J1FUK1 (ribosome production factor 1 OS=Cucurbita moschata OX=3662 GN=LOC111448557 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 0 

Query: 37  RVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFD 96
           R   R     +  + G+ PPP K  RTI+ TREVDETVCKP+DEE               
Sbjct: 39  RAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEE--------------- 98

Query: 97  SLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
              LF+GNDADEFSSI++R    KVLITT RF+SS+G
Sbjct: 99  ---LFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIG 117

[Close]
BLAST of CmaCh14G004630 vs. ExPASy TrEMBL
Match: B9GRT3 (Brix domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G182600 PE=4 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-12
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 0 

Query: 36  SRVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSF 95
           +R +E KR      + G+ PPP KI RTI+ TRE DETVCKP+DEE              
Sbjct: 71  ARDAEEKRAL----ELGEEPPPRKIPRTIENTRENDETVCKPDDEE-------------- 130

Query: 96  DSLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
               LF+GNDADEFSSIL+R  + K+LITTSRF+S+ G
Sbjct: 131 ----LFAGNDADEFSSILKRERTPKILITTSRFNSTRG 146

[Close]
BLAST of CmaCh14G004630 vs. NCBI nr
Match: XP_022155906.1 (ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-13
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 0 

Query: 37  RVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFD 96
           R   R     +  + G+ PPP  I RTI+ TREVDETVCKP+DEE               
Sbjct: 40  RAKARDASEKQALELGEEPPPRMIPRTIENTREVDETVCKPDDEE--------------- 99

Query: 97  SLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
              LF+GNDADEFSSI++R T  KVLITT RF+SS+G
Sbjct: 100 ---LFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIG 118

[Close]
BLAST of CmaCh14G004630 vs. NCBI nr
Match: XP_022156150.1 (ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-12
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 0 

Query: 37  RVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFD 96
           R   R     +  + G+ PPP  I RTI+ TREVDETVCKP+DEE               
Sbjct: 40  RAKARDASEKQALELGEEPPPRMIPRTIENTREVDETVCKPDDEE--------------- 99

Query: 97  SLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
              LF+GNDADEFSSI++R T  KVLITT RF+S++G
Sbjct: 100 ---LFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIG 118

[Close]
BLAST of CmaCh14G004630 vs. NCBI nr
Match: XP_022943997.1 (ribosome production factor 1 [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 0 

Query: 37  RVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFD 96
           R   R     +  + G+ PPP K  RTI+ TREVDETVCKP+DEE               
Sbjct: 39  RAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEE--------------- 98

Query: 97  SLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
              LF+GNDADEFSSI++R    KVLITT RF+SS+G
Sbjct: 99  ---LFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIG 117

[Close]
BLAST of CmaCh14G004630 vs. NCBI nr
Match: KAG7027746.1 (Ribosome production factor 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 0 

Query: 37  RVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFD 96
           R   R     +  + G+ PPP K  RTI+ TREVDETVCKP+DEE               
Sbjct: 39  RAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEE--------------- 98

Query: 97  SLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
              LF+GNDADEFSSI++R    KVLITT RF+SS+G
Sbjct: 99  ---LFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIG 117

[Close]
BLAST of CmaCh14G004630 vs. NCBI nr
Match: XP_022971273.1 (ribosome production factor 1 [Cucurbita maxima] >XP_023539259.1 ribosome production factor 1 [Cucurbita pepo subsp. pepo] >KAG6596207.1 Ribosome production factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 0 

Query: 37  RVSERKRRAYENSDFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFD 96
           R   R     +  + G+ PPP K  RTI+ TREVDETVCKP+DEE               
Sbjct: 39  RAKARDAAEKQALELGEEPPPRKTPRTIENTREVDETVCKPDDEE--------------- 98

Query: 97  SLQLFSGNDADEFSSILERITSSKVLITTSRFDSSVG 134
              LF+GNDADEFSSI++R    KVLITT RF+SS+G
Sbjct: 99  ---LFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIG 117

[Close]
BLAST of CmaCh14G004630 vs. TAIR 10
Match: AT4G01560.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-10
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0 

Query: 50  DFGKMPPPIKIRRTIDITREVDETVCKPNDEEFFSSTVRTCNVSSFDSLQLFSGNDADEF 109
           + G+ PP   I +TI+ TRE DETVC+P+DEE                  LF+  DADEF
Sbjct: 76  ELGEEPPQKMIPKTIENTRESDETVCRPDDEE------------------LFADIDADEF 135

Query: 110 SSILERITSSKVLITTSRFDSSVG 134
           + +L R  + KVL+TT RF+S+ G
Sbjct: 136 NPVLRREIAPKVLLTTCRFNSTRG 141

The following BLAST results are available for this feature:
BLAST of CmaCh14G004630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6IQU63.6e-0431.68Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1[more]
BLAST of CmaCh14G004630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DT483.3e-1350.52ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909... [more]
A0A6J1DPH57.4e-1349.48ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106... [more]
A0A6J1I6C81.3e-1249.48ribosome production factor 1 OS=Cucurbita maxima OX=3661 GN=LOC111470043 PE=4 SV... [more]
A0A6J1FUK11.3e-1249.48ribosome production factor 1 OS=Cucurbita moschata OX=3662 GN=LOC111448557 PE=4 ... [more]
B9GRT31.7e-1251.02Brix domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G18260... [more]
BLAST of CmaCh14G004630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155906.16.9e-1350.52ribosome production factor 1-like [Momordica charantia][more]
XP_022156150.11.5e-1249.48ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome... [more]
XP_022943997.12.6e-1249.48ribosome production factor 1 [Cucurbita moschata][more]
KAG7027746.12.6e-1249.48Ribosome production factor 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022971273.12.6e-1249.48ribosome production factor 1 [Cucurbita maxima] >XP_023539259.1 ribosome product... [more]
BLAST of CmaCh14G004630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G01560.13.4e-1042.86Ribosomal RNA processing Brix domain protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G004630.1CmaCh14G004630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing