CmaCh14G003940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G003940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	serine/arginine-rich SC35-like splicing factor SCL33
Location	Cma_Chr14: 1829609 .. 1831931 (+)
RNA-Seq Expression	CmaCh14G003940
Synteny	CmaCh14G003940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTAGAAGTTACAGTCCATCACCACCAAGGATTTATGGCAGGAGACATCGTAGCCCTAGTCCAAGGGATTGTGGAGGTCGTAGTACGTATCTGCCAACAAGTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGTTTGCTACTGCAATTTATATTTCATGGCTATTTCACCCGTTGCGTCTTTTATACATACAATTATGTCTTGGTTCTTCGTTTCTCATCACATTTATTACATGCATGCTAAGGACAATGCTAGGATATGCTGTATGTGGTACTTAAATTATATATTTGTTGAAGTACAAAGAAATGGTATCTTTTGCAAGTAAAAATGTTCTCTGGTTGATTAATTTTTCTGCTTGCATCTAGTTTTATTTATTTATTTGTTTTTATTGTTATTATTTGAAGGAAGGAGATCTTGCAAGTTCGAAGATCATAATTTATTTTCTTTTGTAAAGTGTTTTATATTGTATATTACTTGGGTGGTTGTCTTTTGTATTTTCAAATTGAGAAAAAAAACCACTTCCGTTAAGAAAAGGAACAAAGGAATAAAGGAAAATGTGTTTGCTTTTGTTCTGCATTGAGCTGGTATATGTCTTCATTTGCACTTGTTTTGCAGGCCAGAGGACCTACGTGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGGTAGGCATACTTTTGAAGATTGTTCTTTTGCTTTGTATGTATGGACTTTTTTTCCCGTATGTTTAACTCATTTTAGTCCCTTAATTTTGTACGCATATGATCTATATATTTGTGAATATATTTTCTGGATGGTTATTTCTATTGATTGCTTAATGATGTGGAATTGGTTCCTCTGTTTTCGATTATTTGGTTTTCCAATAACATACAATCCATTTATGGAGTTTGGTTGTTTTTAATAAAGTGTTGAAGAGAACCAATGAATTAATAAGAGTATCTTGTGGAAGACAAGAAGCAAGTAATTTGTTTATTGTGTTGAAGACATTCCAGTAAGTTCTGGTGACTTAATGTGTGCATGAAGATTTGGTGGAAGTTGGGTTTGAATACATTGAGAAGTTCAAGTCTTGAAGAATTTCATCTCAATTTTTTCTTGTAGAACAGAAATGAGGGATTGAGACTTTGTCTGGGTTTTCTTTTGAATGTGATTGAGTGTTGAACTTACCATGAAAAAACGGACCAAATAAAAGGTTTTTCCACTTTAGGTATCTTGAGTTTCCATTTCTTGGAGAAAAATCCAGCCTGAGGTTTGATTCCATCAACATTGAAGTGAATTACTTGAGTAAATTGACTTCAGCCATTTGACACCCATCATCGTGTATACTTTTAGGGGAAAGAAAAGTTGTATGCTTGATTCAAAATTGCCTCTGGCGTGGTGTACTTTATCCTTGGCCTTCTCTTTTTTGTCTCCTTTTTTTGTTATGTGAAAAGTTTCTGGCTGATAGCAGCAATTACTCAGCTGATGCACCATTACAGTCTGTTTTCTTTTTCTTATCAATCTATTGTCCATCTTTTGGGAAATCCTTTATTAATTGTAAATATCAATACTCATTAGTATTGTTCATGCATAAAATTGTTATCAGGGGTCGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTCTGGTCGAAAAAATTCACATAGTCCAGAGTATTATCCCCCTAGACGATACTCAAGGTAGGCGGTCATAATTTGTACTTTTTTTCCCATTATGATTATTGAATCACTAGGAGGAGGAGAGGGCAAGGGTGGTTTATTCTAATCTCATTTTATGTGAAATAGGTCAATCTCTCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTTAAGTTACAGCCGGAGCAGGAGTCGTAGCTATAGCCGAAGCTATTCTAGGTGAGTAAAAAATATTTCAAGTTTTAAGAAGCCCGCTAATTTTTCTAAAAACCCAGAAACTAATGATGTTAAAAATGCTTGGAATTTGGATTAGGGAGGCCTGTATATGATTTAGAAAATGCTTGCTCAGATTAACTGGTTTTATGGTTATATGTCCCACGTTAGTTGGGGAGGAGGAGGACAATATCTGCTAGTGGTGAATTTGGGTCGTTACAATGCTCTTGTTTAAATTTCTGAACCTTGTGGTTCTTGTCTCGTGTAACATGAAACTTAGGGATTTTGAAAAATGATGGTAGAAACTAAAGTTCTTAAATATGTTCTAGTCCCTGTATTTTTTGAAGTCAACCCTTCAATTTAGCCCCACTCTTAT

mRNA sequence

ATGAGAGGTAGAAGTTACAGTCCATCACCACCAAGGATTTATGGCAGGAGACATCGTAGCCCTAGTCCAAGGGATTGTGGAGGTCGTAGTACGTATCTGCCAACAAGTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGCCAGAGGACCTACGTGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGACATTCCAGTAAGTTCTGGTATCTTGAGTTTCCATTTCTTGGAGAAAAATCCAGCCTGAGGTTTGATTCCATCAACATTGAAGTGAATTACTTGAGGGAAAGAAAAGTTGTATGCTTGATTCAAAATTGCCTCTGGCGTGGTGTACTTTATCCTTGGCCTTCTCTTTTTTGTCTCCTTTTTTTGTTATGTGAAAAGTTTCTGGCTGATAGCAGCAATTACTCAGCTGATGCACCATTACAGGGTCGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTCTGGTCGAAAAAATTCACATAGTCCAGAGTATTATCCCCCTAGACGATACTCAAGGTCAATCTCTCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTTAAGTTACAGCCGGAGCAGGAGTCGTAGCTATAGCCGAAGCTATTCTAGGTGAGTAAAAAATATTTCAAGTTTTAAGAAGCCCGCTAATTTTTCTAAAAACCCAGAAACTAATGATGTTAAAAATGCTTGGAATTTGGATTAGGGAGGCCTGTATATGATTTAGAAAATGCTTGCTCAGATTAACTGGTTTTATGGTTATATGTCCCACGTTAGTTGGGGAGGAGGAGGACAATATCTGCTAGTGGTGAATTTGGGTCGTTACAATGCTCTTGTTTAAATTTCTGAACCTTGTGGTTCTTGTCTCGTGTAACATGAAACTTAGGGATTTTGAAAAATGATGGTAGAAACTAAAGTTCTTAAATATGTTCTAGTCCCTGTATTTTTTGAAGTCAACCCTTCAATTTAGCCCCACTCTTAT

Coding sequence (CDS)

ATGAGAGGTAGAAGTTACAGTCCATCACCACCAAGGATTTATGGCAGGAGACATCGTAGCCCTAGTCCAAGGGATTGTGGAGGTCGTAGTACGTATCTGCCAACAAGTCTTTTGGTTAGGAACCTAAGGCACGACTGCAGGCCAGAGGACCTACGTGGATTATTTGGGCGGTTTGGTCCGCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGACATTCCAGTAAGTTCTGGTATCTTGAGTTTCCATTTCTTGGAGAAAAATCCAGCCTGAGGTTTGATTCCATCAACATTGAAGTGAATTACTTGAGGGAAAGAAAAGTTGTATGCTTGATTCAAAATTGCCTCTGGCGTGGTGTACTTTATCCTTGGCCTTCTCTTTTTTGTCTCCTTTTTTTGTTATGTGAAAAGTTTCTGGCTGATAGCAGCAATTACTCAGCTGATGCACCATTACAGGGTCGGTCCTACAGTTACAAGCGTTCCCCCCTGCGATATTCACAATCACCGCACTCTGGTCGAAAAAATTCACATAGTCCAGAGTATTATCCCCCTAGACGATACTCAAGGTCAATCTCTCCAAGGGGACGGAGGTACAGGGAGCAATCCTACTCAAGGTCACCATATGATTCAAGGGGCTTAAGTTACAGCCGGAGCAGGAGTCGTAGCTATAGCCGAAGCTATTCTAGGTGA

Protein sequence

MRGRSYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLWRGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSPHSGRKNSHSPEYYPPRRYSRSISPRGRRYREQSYSRSPYDSRGLSYSRSRSRSYSRSYSR

Homology

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BLAST of CmaCh14G003940 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-30
Identity = 109/244 (44.67%), Postives = 133/244 (54.51%), Query Frame = 0


Query: 1   MRGRSYSPSPPRIYGRRHRSPSPRD-CGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRFG 60
           MRGRSY+PSPPR YGRR RSPSPR   GGRS  LPTSLLVRNLRHDCR EDLR  F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  PLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLWR 120
           P+KDIYLPRDYY+G    F +++F    + +  +    +++   L  R+           
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH---HMDGYLLLGRE----------- 120

Query: 121 GVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRY-----SQSPHSGR 180
                      L  +  E+     +   A     GR    +R+P RY     S  P  GR
Sbjct: 121 -----------LTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGR 180

Query: 181 KNSHSPEYY--PPRR-YSRSISPRGRRY-REQSYSRSPYD--SRGLSYS--RSRSRSYSR 231
             S S +YY  PPRR + RSISPR  RY   +SYSRSP    SRG S +  R +SRS S 
Sbjct: 181 SRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSP 219

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BLAST of CmaCh14G003940 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-29
Identity = 112/246 (45.53%), Postives = 133/246 (54.07%), Query Frame = 0


Query: 1   MRGRSYSPSPPRIYGRRHRSPSPRD--CGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSY+PSPPR YGRR RSPSPR    G R + LPTSLLVRNLRHDCR EDLR  F +F
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEF--PFLGEKSSLRFDSINIEVNYL---RERKVVCLI 120
           GP+KDIYLPRDYY+G    F +++F  P    ++  + D       YL   RE  VV   
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMD------GYLLLGRELTVVFAE 120

Query: 121 QNCLWRGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSP--- 180
           +N          P+         E    D    S       R    +RSP RYS+SP   
Sbjct: 121 EN-------RKKPT---------EMRTRDRGGRS------NRFQDRRRSPPRYSRSPPPR 180

Query: 181 HSGRKNSHSPEYYPP---RRYSRSISPRGRRY-REQSYSRSP--YDSRGLSYSRSRSRSY 231
              R  S S  Y  P   R  SRS+SP+ RRY +E+SYSRSP    SR  S S  R +S+
Sbjct: 181 RGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSH 218

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BLAST of CmaCh14G003940 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 92/246 (37.40%), Postives = 117/246 (47.56%), Query Frame = 0


Query: 2   RGRSYSP-----SPPRIY-----GRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDL 61
           R RSYSP     SPPR        R    PS RD     +  P+ LL+RNL  D RP DL
Sbjct: 7   RSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRD---HESSGPSGLLIRNLPLDARPNDL 66

Query: 62  RGLFGRFGPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVC 121
           R  F RFGPLKDIYLPR+YY+G    F ++++ +  E ++     +N +V   RE  +V 
Sbjct: 67  RDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRY-AEDAAEAMKRMNHKVIGGREIAIVF 126

Query: 122 LIQNCLWRGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQG-RSYSYKRSPLRYSQSP 181
             +N      +                   D    S  +P +  RS+S  RSP R  +S 
Sbjct: 127 AEENRKTPQEMRTTNG--------TSGRHGDYKRTSHRSPRRRYRSHSRSRSPPR-RESR 186

Query: 182 HSGRKNSHSPEYYPPRRYSRSIS----PRGRRYREQSYSRSPYDSRGLSYSRSR--SRSY 231
           HS        + Y PRR SRSIS    PR  R  +    RSP + R L+  RSR  SRS 
Sbjct: 187 HS---KVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSR 236

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BLAST of CmaCh14G003940 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-13
Identity = 81/220 (36.82%), Postives = 103/220 (46.82%), Query Frame = 0


Query: 4   RSYSP---SPPRI-YGRRHRSPSP----------RDCGGRSTYLPTSLLVRNLRHDCRPE 63
           R YSP   SPPR  YG R RSP P             GGR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRGLFGRFGPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKV 123
           +LR  F RFGP++D+Y+PRDYYSG    F ++EF    +    +  S+N      RE  V
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQ-RSMNRRSFAGREITV 121

Query: 124 VCLIQNCLWRGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQS 183
           V   ++          P    +      +  + S + S     + RS S  RSP R S S
Sbjct: 122 VVASES-------RKRPEEMRVKTRTRSREPSGSRDRS-HGRSRSRSISRSRSPRRPSDS 181

Query: 184 PHSGRKNSHSPEYYPPRRYSRSISPRGRRYREQSYSRSPY 210
               R  S+SP    PRR  R   PRG    +++YSR  Y
Sbjct: 182 RSRYRSRSYSP---APRR--RGGPPRGE--EDENYSRRSY 205

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BLAST of CmaCh14G003940 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-07
Identity = 65/207 (31.40%), Postives = 93/207 (44.93%), Query Frame = 0


Query: 35  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRF 94
           TSL VRN+  D R EDLR  FGR+GP+ D+Y+P D+Y+     F Y++F  + +      
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 95  D-------SINIEVNYLR-ERKVVCLIQNCLWRGVLYPWPSLFCLLFLLCEKFLADSSNY 154
           +          IE+ + + +RK    ++    R V                     SS Y
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVY-------------------SSSRY 129

Query: 155 -SADAPLQGRSYSYKRSPLRYSQSPHSGRKNSHSPEYYPPRRYS-RSISPRGRRYREQSY 214
              D   + RS SY+R            R  S S +Y   R YS R+  P GR  R +S+
Sbjct: 130 DDYDRYRRSRSRSYERR-----------RSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSH 186

Query: 215 S-RSPYDSRGLSYSRSRSRSYSRSYSR 231
           S    +  R  S+SRS+S S SRS S+
Sbjct: 190 SDNDRFKHRNRSFSRSKSNSRSRSKSQ 186

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BLAST of CmaCh14G003940 vs. ExPASy TrEMBL
Match: A0A6J1DCY5 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3673 GN=LOC111019338 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.1e-58
Identity = 144/235 (61.28%), Postives = 161/235 (68.51%), Query Frame = 0


Query: 1   MRGR--SYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGR  SYSPSPPR YGRRHRSPSPRD GGR   LPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLW 120
           GPLKDIYLPRDYYSG    F +++F    + +  +++ ++ +V   RE  VV   +N   
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADATDAKYE-LDGQVLLGRELTVVFAEEN--- 120

Query: 121 RGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSPHSGRKNSH 180
                  P          E    DSS        +GRSY+Y+RSPLRYS+SPH  RK S 
Sbjct: 121 ----RKRPE---------EMRARDSS--------RGRSYNYRRSPLRYSRSPHYDRKYSR 180

Query: 181 SPEYYPPR---RYSRSISPRGRRYREQSYSRSPYDSRGLSYSRSRSRSYSRSYSR 231
           SPEYY P    RYSRSISPR RRYRE+SY RSPYDSRG SYSRSRSRSYSRSY R
Sbjct: 181 SPEYYSPAQSGRYSRSISPRDRRYRERSYLRSPYDSRGRSYSRSRSRSYSRSYCR 210

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BLAST of CmaCh14G003940 vs. ExPASy TrEMBL
Match: A0A1S3B7U0 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=LOC103486733 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.5e-55
Identity = 144/237 (60.76%), Postives = 159/237 (67.09%), Query Frame = 0


Query: 1   MRGR--SYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGR  SYSPSPPR YGRR+RSPSPR  GGR   LPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLW 120
           GPLKDIYLPRDYYSG    F +++F    + +  +++ ++ +V    E  VV   +N   
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYE-LDGQVLLGHELTVVFAEEN--- 120

Query: 121 RGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKR--SPLRYSQSPHSGRKN 180
                  P          E    DSS        +GRSYSY R  SPLRYS+SPH  RK 
Sbjct: 121 ----RKRPE---------EMRARDSS--------RGRSYSYSRRHSPLRYSRSPHYDRKY 180

Query: 181 SHSPEYYPP---RRYSRSISPRGRRYREQSYSRSPYDSRGLSYSRSRSRSYSRSYSR 231
           S SPEYY P   RRYSR  SPRGRRYREQSYSRSPYD RG SYSRSRSRSYSRSYSR
Sbjct: 181 SRSPEYYSPARSRRYSR--SPRGRRYREQSYSRSPYDPRGRSYSRSRSRSYSRSYSR 210

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BLAST of CmaCh14G003940 vs. ExPASy TrEMBL
Match: A0A6J1G9Y1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-53
Identity = 138/237 (58.23%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MRGR--SYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGR  SYSPSPPR YGRR+RS SPR  GGR   LPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLW 120
           GPLKDIYLPRDYYSG    F ++++    + +  +++ ++ +V   RE  VV        
Sbjct: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYE-LDGQVLLGRELTVV-------- 120

Query: 121 RGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSPHSGRKNSH 180
                             E+         A     GRSYSY+RSPL+YSQSP  GRK S 
Sbjct: 121 ----------------FAEENRKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSP 180

Query: 181 SPEYYPPR---RYSRSISPRGRRYREQSYSRSPYDS--RGLSYSRSRSRSYSRSYSR 231
           SPEYY P    RYSRSISPR RRYRE+SYSRSPYDS  RG S SRSRSRSYSRSYSR
Sbjct: 181 SPEYYSPARSGRYSRSISPRDRRYRERSYSRSPYDSRDRGYSRSRSRSRSYSRSYSR 212

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BLAST of CmaCh14G003940 vs. ExPASy TrEMBL
Match: A0A6J1G9Y3 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-53
Identity = 138/237 (58.23%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MRGR--SYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGR  SYSPSPPR YGRR+RS SPR  GGR   LPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 11  MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 70

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLW 120
           GPLKDIYLPRDYYSG    F ++++    + +  +++ ++ +V   RE  VV        
Sbjct: 71  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYE-LDGQVLLGRELTVV-------- 130

Query: 121 RGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSPHSGRKNSH 180
                             E+         A     GRSYSY+RSPL+YSQSP  GRK S 
Sbjct: 131 ----------------FAEENRKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSP 190

Query: 181 SPEYYPPR---RYSRSISPRGRRYREQSYSRSPYDS--RGLSYSRSRSRSYSRSYSR 231
           SPEYY P    RYSRSISPR RRYRE+SYSRSPYDS  RG S SRSRSRSYSRSYSR
Sbjct: 191 SPEYYSPARSGRYSRSISPRDRRYRERSYSRSPYDSRDRGYSRSRSRSRSYSRSYSR 222

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BLAST of CmaCh14G003940 vs. ExPASy TrEMBL
Match: A0A6J1G9D2 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-53
Identity = 138/237 (58.23%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MRGR--SYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGR  SYSPSPPR YGRR+RS SPR  GGR   LPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 5   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 64

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLW 120
           GPLKDIYLPRDYYSG    F ++++    + +  +++ ++ +V   RE  VV        
Sbjct: 65  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYE-LDGQVLLGRELTVV-------- 124

Query: 121 RGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSPHSGRKNSH 180
                             E+         A     GRSYSY+RSPL+YSQSP  GRK S 
Sbjct: 125 ----------------FAEENRKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSP 184

Query: 181 SPEYYPPR---RYSRSISPRGRRYREQSYSRSPYDS--RGLSYSRSRSRSYSRSYSR 231
           SPEYY P    RYSRSISPR RRYRE+SYSRSPYDS  RG S SRSRSRSYSRSYSR
Sbjct: 185 SPEYYSPARSGRYSRSISPRDRRYRERSYSRSPYDSRDRGYSRSRSRSRSYSRSYSR 216

[Close]

BLAST of CmaCh14G003940 vs. NCBI nr
Match: XP_022151394.1 (serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia])

HSP 1 Score: 236.5 bits (602), Expect = 2.3e-58
Identity = 144/235 (61.28%), Postives = 161/235 (68.51%), Query Frame = 0


Query: 1   MRGR--SYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGR  SYSPSPPR YGRRHRSPSPRD GGR   LPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLW 120
           GPLKDIYLPRDYYSG    F +++F    + +  +++ ++ +V   RE  VV   +N   
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADATDAKYE-LDGQVLLGRELTVVFAEEN--- 120

Query: 121 RGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSPHSGRKNSH 180
                  P          E    DSS        +GRSY+Y+RSPLRYS+SPH  RK S 
Sbjct: 121 ----RKRPE---------EMRARDSS--------RGRSYNYRRSPLRYSRSPHYDRKYSR 180

Query: 181 SPEYYPPR---RYSRSISPRGRRYREQSYSRSPYDSRGLSYSRSRSRSYSRSYSR 231
           SPEYY P    RYSRSISPR RRYRE+SY RSPYDSRG SYSRSRSRSYSRSY R
Sbjct: 181 SPEYYSPAQSGRYSRSISPRDRRYRERSYLRSPYDSRGRSYSRSRSRSYSRSYCR 210

[Close]

BLAST of CmaCh14G003940 vs. NCBI nr
Match: KAG7017535.1 (Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.0 bits (593), Expect = 2.5e-57
Identity = 145/233 (62.23%), Postives = 159/233 (68.24%), Query Frame = 0


Query: 1   MRGRSYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRFGP 60
           MRGRSYSPSPPR YGRR+RSPSPR  GGRS YL TSLLVRNLRHDCRPED+ GLFGRFGP
Sbjct: 30  MRGRSYSPSPPRSYGRRNRSPSPRGRGGRSRYLHTSLLVRNLRHDCRPEDVHGLFGRFGP 89

Query: 61  LKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLWRG 120
           LKDIYLPRDYYSG    F +++F    + +   +D    +V   RE  VV   +N     
Sbjct: 90  LKDIYLPRDYYSGEPRGFRFVQFVDPAD-AKYEWDG---QVLLGRELTVVFAEENRKRPE 149

Query: 121 VLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSPHSGRKNSHSP 180
           V+                   DSS        +G SYSYKRSPLRYSQSPH GRKN+ S 
Sbjct: 150 VMR----------------ARDSS--------RGWSYSYKRSPLRYSQSPHYGRKNARSA 209

Query: 181 EYYPP---RRYSRSISPRGRRYREQSYSRSPYDSRGLSYSRSRSRS-YSRSYS 230
           EYY P   RRYSRS+SPRGRRYREQSYSRSPYDSRG SYSRSRS S YSRSYS
Sbjct: 210 EYYSPARCRRYSRSMSPRGRRYREQSYSRSPYDSRGCSYSRSRSHSCYSRSYS 234

[Close]

BLAST of CmaCh14G003940 vs. NCBI nr
Match: XP_008443002.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 3.1e-55
Identity = 144/237 (60.76%), Postives = 159/237 (67.09%), Query Frame = 0


Query: 1   MRGR--SYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGR  SYSPSPPR YGRR+RSPSPR  GGR   LPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLW 120
           GPLKDIYLPRDYYSG    F +++F    + +  +++ ++ +V    E  VV   +N   
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYE-LDGQVLLGHELTVVFAEEN--- 120

Query: 121 RGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKR--SPLRYSQSPHSGRKN 180
                  P          E    DSS        +GRSYSY R  SPLRYS+SPH  RK 
Sbjct: 121 ----RKRPE---------EMRARDSS--------RGRSYSYSRRHSPLRYSRSPHYDRKY 180

Query: 181 SHSPEYYPP---RRYSRSISPRGRRYREQSYSRSPYDSRGLSYSRSRSRSYSRSYSR 231
           S SPEYY P   RRYSR  SPRGRRYREQSYSRSPYD RG SYSRSRSRSYSRSYSR
Sbjct: 181 SRSPEYYSPARSRRYSR--SPRGRRYREQSYSRSPYDPRGRSYSRSRSRSYSRSYSR 210

[Close]

BLAST of CmaCh14G003940 vs. NCBI nr
Match: KAG6596659.1 (Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.0 bits (567), Expect = 2.6e-54
Identity = 137/235 (58.30%), Postives = 155/235 (65.96%), Query Frame = 0


Query: 1   MRGR--SYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGR  SYSPSPPR YGRR+RS SPR  GGR   LPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 48  MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 107

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLW 120
           GPLKDIYLPRDYYSG    F ++++    + +  +++ ++ +V   RE  VV        
Sbjct: 108 GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYE-LDGQVLLGRELTVV-------- 167

Query: 121 RGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSPHSGRKNSH 180
                             E+         A    +GRSYSY+RSPL+YSQSP  GRK S 
Sbjct: 168 ----------------FAEENRKRPEQMRARDSSRGRSYSYRRSPLQYSQSPPHGRKYSR 227

Query: 181 SPEYYPP---RRYSRSISPRGRRYREQSYSRSPYDSRGLSYSRSRSRSYSRSYSR 231
           SPEYY P   RRYSRSISPR RRYRE+SYSRSPYDSR   YSRSRSRS SRSYSR
Sbjct: 228 SPEYYSPARSRRYSRSISPRDRRYRERSYSRSPYDSRDRGYSRSRSRSRSRSYSR 257

[Close]

BLAST of CmaCh14G003940 vs. NCBI nr
Match: XP_022948463.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-53
Identity = 138/237 (58.23%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MRGR--SYSPSPPRIYGRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGR  SYSPSPPR YGRR+RS SPR  GGR   LPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 5   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 64

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLW 120
           GPLKDIYLPRDYYSG    F ++++    + +  +++ ++ +V   RE  VV        
Sbjct: 65  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYE-LDGQVLLGRELTVV-------- 124

Query: 121 RGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSPHSGRKNSH 180
                             E+         A     GRSYSY+RSPL+YSQSP  GRK S 
Sbjct: 125 ----------------FAEENRKRPEQMRARDSSSGRSYSYRRSPLQYSQSPPHGRKYSP 184

Query: 181 SPEYYPPR---RYSRSISPRGRRYREQSYSRSPYDS--RGLSYSRSRSRSYSRSYSR 231
           SPEYY P    RYSRSISPR RRYRE+SYSRSPYDS  RG S SRSRSRSYSRSYSR
Sbjct: 185 SPEYYSPARSGRYSRSISPRDRRYRERSYSRSPYDSRDRGYSRSRSRSRSYSRSYSR 216

[Close]

BLAST of CmaCh14G003940 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 134.8 bits (338), Expect = 8.8e-32
Identity = 106/239 (44.35%), Postives = 130/239 (54.39%), Query Frame = 0


Query: 1   MRGRSYSPSPPRIYGRRHRSPSPRD-CGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRFG 60
           MRGRSY+PSPPR YGRR RSPSPR   GGRS  LPTSLLVRNLRHDCR EDLR  F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  PLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLWR 120
           P+KDIYLPRDYY+G    F +++F    + +  +    +++   L  R+           
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH---HMDGYLLLGRE----------- 120

Query: 121 GVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRY-----SQSPHSGR 180
                      L  +  E+     +   A     GR    +R+P RY     S  P  GR
Sbjct: 121 -----------LTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGR 180

Query: 181 KNSHSPEYY--PPRR-YSRSISPRGRRY-REQSYSRSPYD--SRGLSYSRSRSRSYSRS 228
             S S +YY  PPRR + RSISPR  RY   +SYSRSP    SRG S +  R +S S S
Sbjct: 181 SRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLS 214

[Close]

BLAST of CmaCh14G003940 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-31
Identity = 109/244 (44.67%), Postives = 133/244 (54.51%), Query Frame = 0


Query: 1   MRGRSYSPSPPRIYGRRHRSPSPRD-CGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRFG 60
           MRGRSY+PSPPR YGRR RSPSPR   GGRS  LPTSLLVRNLRHDCR EDLR  F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  PLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVCLIQNCLWR 120
           P+KDIYLPRDYY+G    F +++F    + +  +    +++   L  R+           
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH---HMDGYLLLGRE----------- 120

Query: 121 GVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRY-----SQSPHSGR 180
                      L  +  E+     +   A     GR    +R+P RY     S  P  GR
Sbjct: 121 -----------LTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGR 180

Query: 181 KNSHSPEYY--PPRR-YSRSISPRGRRY-REQSYSRSPYD--SRGLSYS--RSRSRSYSR 231
             S S +YY  PPRR + RSISPR  RY   +SYSRSP    SRG S +  R +SRS S 
Sbjct: 181 SRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSP 219

[Close]

BLAST of CmaCh14G003940 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-30
Identity = 112/246 (45.53%), Postives = 133/246 (54.07%), Query Frame = 0


Query: 1   MRGRSYSPSPPRIYGRRHRSPSPRD--CGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSY+PSPPR YGRR RSPSPR    G R + LPTSLLVRNLRHDCR EDLR  F +F
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 61  GPLKDIYLPRDYYSGHSSKFWYLEF--PFLGEKSSLRFDSINIEVNYL---RERKVVCLI 120
           GP+KDIYLPRDYY+G    F +++F  P    ++  + D       YL   RE  VV   
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMD------GYLLLGRELTVVFAE 120

Query: 121 QNCLWRGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPLRYSQSP--- 180
           +N          P+         E    D    S       R    +RSP RYS+SP   
Sbjct: 121 EN-------RKKPT---------EMRTRDRGGRS------NRFQDRRRSPPRYSRSPPPR 180

Query: 181 HSGRKNSHSPEYYPP---RRYSRSISPRGRRY-REQSYSRSP--YDSRGLSYSRSRSRSY 231
              R  S S  Y  P   R  SRS+SP+ RRY +E+SYSRSP    SR  S S  R +S+
Sbjct: 181 RGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSH 218

[Close]

BLAST of CmaCh14G003940 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 125.6 bits (314), Expect = 5.3e-29
Identity = 113/254 (44.49%), Postives = 134/254 (52.76%), Query Frame = 0


Query: 1   MRGRSYSPSPPRIYGRRHRSPSPRD-CGGRSTYLPTSLLVRNLRHDCRPEDLRGLFGRFG 60
           MRGRSY+PSPPR YGRR RSPSPR   GGRS  LPTSLLVRNLRHDCR EDLR  F +FG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  PLKDIYLPRDYYSG------------HSSKFWYLEFPFLGEKSSLRFDSINIEVNYL--- 120
           P+KDIYLPRDYY+G                F +++F    + +    D+ +    YL   
Sbjct: 61  PVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAA----DAKHHMDGYLLLG 120

Query: 121 RERKVVCLIQNCLWRGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQGRSYSYKRSPL 180
           RE  VV   +N          P+       +  +     S +        R YS  RSP 
Sbjct: 121 RELTVVFAEEN-------RKKPT------EMRARERGGGSRFRDRRRTPPRYYSRSRSP- 180

Query: 181 RYSQSPHSGRKNSHSPEYY--PPRR-YSRSISPRGRRY-REQSYSRSPYD--SRGLSYS- 231
                P  GR  S S +YY  PPRR + RSISPR  RY   +SYSRSP    SRG S + 
Sbjct: 181 ----PPRRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTP 232

[Close]

BLAST of CmaCh14G003940 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 81.6 bits (200), Expect = 8.8e-16
Identity = 92/246 (37.40%), Postives = 117/246 (47.56%), Query Frame = 0


Query: 2   RGRSYSP-----SPPRIY-----GRRHRSPSPRDCGGRSTYLPTSLLVRNLRHDCRPEDL 61
           R RSYSP     SPPR        R    PS RD     +  P+ LL+RNL  D RP DL
Sbjct: 7   RSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRD---HESSGPSGLLIRNLPLDARPNDL 66

Query: 62  RGLFGRFGPLKDIYLPRDYYSGHSSKFWYLEFPFLGEKSSLRFDSINIEVNYLRERKVVC 121
           R  F RFGPLKDIYLPR+YY+G    F ++++ +  E ++     +N +V   RE  +V 
Sbjct: 67  RDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRY-AEDAAEAMKRMNHKVIGGREIAIVF 126

Query: 122 LIQNCLWRGVLYPWPSLFCLLFLLCEKFLADSSNYSADAPLQG-RSYSYKRSPLRYSQSP 181
             +N      +                   D    S  +P +  RS+S  RSP R  +S 
Sbjct: 127 AEENRKTPQEMRTTNG--------TSGRHGDYKRTSHRSPRRRYRSHSRSRSPPR-RESR 186

Query: 182 HSGRKNSHSPEYYPPRRYSRSIS----PRGRRYREQSYSRSPYDSRGLSYSRSR--SRSY 231
           HS        + Y PRR SRSIS    PR  R  +    RSP + R L+  RSR  SRS 
Sbjct: 187 HS---KVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSR 236

The following BLAST results are available for this feature:

BLAST of CmaCh14G003940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU4	1.6e-30	44.67	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	1.8e-29	45.53	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q1PDV2	1.2e-14	37.40	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
Q8L3X8	5.2e-13	36.82	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
O75494	2.5e-07	31.40	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of CmaCh14G003940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCY5	1.1e-58	61.28	serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3...	[more]
A0A1S3B7U0	1.5e-55	60.76	serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1G9Y1	1.8e-53	58.23	serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita mos...	[more]
A0A6J1G9Y3	1.8e-53	58.23	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita mos...	[more]
A0A6J1G9D2	1.8e-53	58.23	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita mos...	[more]

BLAST of CmaCh14G003940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151394.1	2.3e-58	61.28	serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia]	[more]
KAG7017535.1	2.5e-57	62.23	Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyro...	[more]
XP_008443002.1	3.1e-55	60.76	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Cucumis melo]	[more]
KAG6596659.1	2.6e-54	58.30	Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyro...	[more]
XP_022948463.1	3.8e-53	58.23	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita mosch...	[more]

BLAST of CmaCh14G003940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.2	8.8e-32	44.35	SC35-like splicing factor 33	[more]
AT1G55310.1	1.1e-31	44.67	SC35-like splicing factor 33	[more]
AT3G13570.1	1.3e-30	45.53	SC35-like splicing factor 30A	[more]
AT1G55310.3	5.3e-29	44.49	SC35-like splicing factor 33	[more]
AT5G18810.1	8.8e-16	37.40	SC35-like splicing factor 28	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 36..102 e-value: 0.0051 score: 26.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 37..83 e-value: 5.6E-8 score: 32.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 35..106 score: 10.002025
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 15..89 e-value: 7.6E-10 score: 40.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..176
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..110
None	No IPR available	PANTHER	PTHR23147:SF193	BNAA06G00410D PROTEIN	coord: 1..110
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G003940.1	CmaCh14G003940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0003676	nucleic acid binding