CmaCh13G006020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G006020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	rhoGEF domain-containing protein gxcI-like
Location	Cma_Chr13: 5902852 .. 5903451 (+)
RNA-Seq Expression	CmaCh13G006020
Synteny	CmaCh13G006020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAATAGCATAAGATGCTGCATATCTTGCATTCTACCATGTGGAGCTCTGGATGTGATCCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGTGGCTCAATCAAAGCCTCCGACGTCATGAAAGCCCATCCCAAACATGTCCTTAAGAAGCCCTCCTCCCCCTCCTCCTCCGCCGCCTGCGCTGATGACGCCTCCGCCCTCCCCAAGATCGTCATCGTCCCACCGGAAGCCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCCAACCCTGACAAGCCTCGCTCCCGATCCTCCTCCCGAAGAAAGAAGAGAGTTACCAATAACAACAATAAAAACAATCATCACTCCGACCGAACACCCCCCGCCGCCCTCGCATCTGCCACCGCCGATACCGACGACAACGACGACAACAACAACAACAACAGCTCCATTTCCATGTCCAACCTCCACGTTTCCGACCAGTACCTCTCCGAAATACTCTCCGAGAAAGCCTCCACCCACCGCGAACGGCGGCGCGGCCGTGTCGGCGTCTGGAGACCTCACTTAGAGAGCATTTGCGAGTCACCCAGCCATGTCTAA

mRNA sequence

ATGAGGAATAGCATAAGATGCTGCATATCTTGCATTCTACCATGTGGAGCTCTGGATGTGATCCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGTGGCTCAATCAAAGCCTCCGACGTCATGAAAGCCCATCCCAAACATGTCCTTAAGAAGCCCTCCTCCCCCTCCTCCTCCGCCGCCTGCGCTGATGACGCCTCCGCCCTCCCCAAGATCGTCATCGTCCCACCGGAAGCCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCCAACCCTGACAAGCCTCGCTCCCGATCCTCCTCCCGAAGAAAGAAGAGAGTTACCAATAACAACAATAAAAACAATCATCACTCCGACCGAACACCCCCCGCCGCCCTCGCATCTGCCACCGCCGATACCGACGACAACGACGACAACAACAACAACAACAGCTCCATTTCCATGTCCAACCTCCACGTTTCCGACCAGTACCTCTCCGAAATACTCTCCGAGAAAGCCTCCACCCACCGCGAACGGCGGCGCGGCCGTGTCGGCGTCTGGAGACCTCACTTAGAGAGCATTTGCGAGTCACCCAGCCATGTCTAA

Coding sequence (CDS)

ATGAGGAATAGCATAAGATGCTGCATATCTTGCATTCTACCATGTGGAGCTCTGGATGTGATCCGCATAGTACACTCCAATGGCTACGTCGAAGAAATCAGTGGCTCAATCAAAGCCTCCGACGTCATGAAAGCCCATCCCAAACATGTCCTTAAGAAGCCCTCCTCCCCCTCCTCCTCCGCCGCCTGCGCTGATGACGCCTCCGCCCTCCCCAAGATCGTCATCGTCCCACCGGAAGCCGACCTCCAACGCGGTAAGATTTATTTCCTCATGCCACTCCCTCCCAACCCTGACAAGCCTCGCTCCCGATCCTCCTCCCGAAGAAAGAAGAGAGTTACCAATAACAACAATAAAAACAATCATCACTCCGACCGAACACCCCCCGCCGCCCTCGCATCTGCCACCGCCGATACCGACGACAACGACGACAACAACAACAACAACAGCTCCATTTCCATGTCCAACCTCCACGTTTCCGACCAGTACCTCTCCGAAATACTCTCCGAGAAAGCCTCCACCCACCGCGAACGGCGGCGCGGCCGTGTCGGCGTCTGGAGACCTCACTTAGAGAGCATTTGCGAGTCACCCAGCCATGTCTAA

Protein sequence

MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSAACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNNHHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRGRVGVWRPHLESICESPSHV

Homology

[Close]

BLAST of CmaCh13G006020 vs. ExPASy TrEMBL
Match: A0A6J1KLR7 (rhoGEF domain-containing protein gxcI-like OS=Cucurbita maxima OX=3661 GN=LOC111495719 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
           AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN
Sbjct: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120

Query: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180
           HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG
Sbjct: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180

Query: 181 RVGVWRPHLESICESPSHV 200
           RVGVWRPHLESICESPSHV
Sbjct: 181 RVGVWRPHLESICESPSHV 199

[Close]

BLAST of CmaCh13G006020 vs. ExPASy TrEMBL
Match: A0A5A7UMG1 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002290 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.9e-71
Identity = 153/199 (76.88%), Postives = 166/199 (83.42%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSS
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
           +A  D AS+LPKIVIVPPEADLQRGKIYFLMPLPP+PDKPR     RRKKR     + NN
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR-----RRKKR----EHSNN 120

Query: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180
           HH   T  A+ ASA  DT        NN++ISM+NL VSD YLSEILS+KASTHRERRRG
Sbjct: 121 HHRTIT-TASTASAVPDT------TTNNNNISMTNLLVSDHYLSEILSDKASTHRERRRG 180

Query: 181 RVGVWRPHLESICESPSHV 200
           RVGVWRPHL+SICESPS +
Sbjct: 181 RVGVWRPHLQSICESPSDI 183

[Close]

BLAST of CmaCh13G006020 vs. ExPASy TrEMBL
Match: A0A1S3B8G2 (uncharacterized protein LOC103486913 OS=Cucumis melo OX=3656 GN=LOC103486913 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.9e-71
Identity = 153/199 (76.88%), Postives = 166/199 (83.42%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSS
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
           +A  D AS+LPKIVIVPPEADLQRGKIYFLMPLPP+PDKPR     RRKKR     + NN
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR-----RRKKR----EHSNN 120

Query: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180
           HH   T  A+ ASA  DT        NN++ISM+NL VSD YLSEILS+KASTHRERRRG
Sbjct: 121 HHRTIT-TASTASAVPDT------TTNNNNISMTNLLVSDHYLSEILSDKASTHRERRRG 180

Query: 181 RVGVWRPHLESICESPSHV 200
           RVGVWRPHL+SICESPS +
Sbjct: 181 RVGVWRPHLQSICESPSDI 183

[Close]

BLAST of CmaCh13G006020 vs. ExPASy TrEMBL
Match: A0A0A0M094 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G471460 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 7.1e-70
Identity = 154/199 (77.39%), Postives = 163/199 (81.91%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSS
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
           AA  D ASALPKIVIVPPEADLQRGKIYFLMPLPP+PDKPR     RRKKR  +NN    
Sbjct: 61  AA-HDAASALPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR-----RRKKREYSNN---- 120

Query: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180
            H   T  A+ ASA  DT  N        SISM+NL VSD YLSEILS+KASTHRERRRG
Sbjct: 121 -HHRTTTAASTASAVPDTTTN--------SISMTNLLVSDHYLSEILSDKASTHRERRRG 180

Query: 181 RVGVWRPHLESICESPSHV 200
           RVGVWRPHL+SICESPS +
Sbjct: 181 RVGVWRPHLQSICESPSDI 180

[Close]

BLAST of CmaCh13G006020 vs. ExPASy TrEMBL
Match: F6HM99 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g01310 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 9.6e-59
Identity = 125/197 (63.45%), Postives = 152/197 (77.16%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           M+N+IRCCISCILPCGALDV+RIVHSNG+VEEISG+I AS++MKAHPKHVLKKPSS S  
Sbjct: 1   MKNTIRCCISCILPCGALDVVRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSSS-- 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
                +   +PKIV+VPP+A+LQRGKIYFLMP+PP P+K RSRSS+R+K+R + +NN N 
Sbjct: 61  -----EEGVVPKIVVVPPDAELQRGKIYFLMPIPPPPEKTRSRSSTRKKRRDSESNNTNT 120

Query: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180
           HH                     +N  N++ISM+NL +SD+YLSEILSEK ST R+RRRG
Sbjct: 121 HH-------------------HHSNTANNTISMTNLLISDRYLSEILSEKISTQRDRRRG 171

Query: 181 RVGVWRPHLESICESPS 198
           RVGVWRPHLESI E+PS
Sbjct: 181 RVGVWRPHLESISETPS 171

[Close]

BLAST of CmaCh13G006020 vs. NCBI nr
Match: XP_023001645.1 (rhoGEF domain-containing protein gxcI-like [Cucurbita maxima])

HSP 1 Score: 388.7 bits (997), Expect = 3.1e-104
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
           AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN
Sbjct: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120

Query: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180
           HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG
Sbjct: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180

Query: 181 RVGVWRPHLESICESPSHV 200
           RVGVWRPHLESICESPSHV
Sbjct: 181 RVGVWRPHLESICESPSHV 199

[Close]

BLAST of CmaCh13G006020 vs. NCBI nr
Match: KAG6583958.1 (hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364.0 bits (933), Expect = 8.2e-97
Identity = 192/199 (96.48%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
           AAC+DDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN
Sbjct: 61  AACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120

Query: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180
           HHSDRTPPAA ASATAD+DD DDNNNNN+SISMSNL VSDQYLSEILSEKASTHRERRRG
Sbjct: 121 HHSDRTPPAA-ASATADSDD-DDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRRG 180

Query: 181 RVGVWRPHLESICESPSHV 200
           RVGVWRPHLESICESPS V
Sbjct: 181 RVGVWRPHLESICESPSDV 197

[Close]

BLAST of CmaCh13G006020 vs. NCBI nr
Match: KAG7019577.1 (hypothetical protein SDJN02_18538, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 360.5 bits (924), Expect = 9.1e-96
Identity = 188/200 (94.00%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
           AAC+DDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN
Sbjct: 61  AACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120

Query: 121 HHSDRTPPAAL-ASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRR 180
           HHSDRTPPAA  A+A+A  D +DDNNNNN+SISMSNL VSDQYLSEILSEKASTHRERRR
Sbjct: 121 HHSDRTPPAAASAAASATADSDDDNNNNNNSISMSNLLVSDQYLSEILSEKASTHRERRR 180

Query: 181 GRVGVWRPHLESICESPSHV 200
           GRVGVWRPHLESICESPS V
Sbjct: 181 GRVGVWRPHLESICESPSDV 200

[Close]

BLAST of CmaCh13G006020 vs. NCBI nr
Match: XP_023519997.1 (uncharacterized protein LOC111783307, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338.2 bits (866), Expect = 4.8e-89
Identity = 183/198 (92.42%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 5   IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSP---SSSA 64
           IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSP   SSSA
Sbjct: 2   IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSSSSSA 61

Query: 65  ACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNNH 124
           AC+DDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNNH
Sbjct: 62  ACSDDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNNH 121

Query: 125 HSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRGR 184
           HSDRTPPAA A+A+A T D DDNNN   SISMSNL VSDQYLSEILSEKASTHRERRRGR
Sbjct: 122 HSDRTPPAAAAAASA-TADPDDNNN---SISMSNLLVSDQYLSEILSEKASTHRERRRGR 181

Query: 185 VGVWRPHLESICESPSHV 200
           VGVWRPHLESICESPS V
Sbjct: 182 VGVWRPHLESICESPSDV 195

[Close]

BLAST of CmaCh13G006020 vs. NCBI nr
Match: XP_008443296.1 (PREDICTED: uncharacterized protein LOC103486913 [Cucumis melo] >KAA0057042.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 1.0e-70
Identity = 153/199 (76.88%), Postives = 166/199 (83.42%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           M+NSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKPSSPSSS
Sbjct: 1   MKNSIRCCISCILPCGALDVIRIVHSNGYVEEITGSIKASDVMKAHPKHVLKKPSSPSSS 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
           +A  D AS+LPKIVIVPPEADLQRGKIYFLMPLPP+PDKPR     RRKKR     + NN
Sbjct: 61  SAAHDAASSLPKIVIVPPEADLQRGKIYFLMPLPPDPDKPR-----RRKKR----EHSNN 120

Query: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERRRG 180
           HH   T  A+ ASA  DT        NN++ISM+NL VSD YLSEILS+KASTHRERRRG
Sbjct: 121 HHRTIT-TASTASAVPDT------TTNNNNISMTNLLVSDHYLSEILSDKASTHRERRRG 180

Query: 181 RVGVWRPHLESICESPSHV 200
           RVGVWRPHL+SICESPS +
Sbjct: 181 RVGVWRPHLQSICESPSDI 183

[Close]

BLAST of CmaCh13G006020 vs. TAIR 10
Match: AT1G29195.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 177.9 bits (450), Expect = 7.8e-45
Identity = 110/196 (56.12%), Postives = 132/196 (67.35%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           M+ +IRCCI+CILPCGALDVIRIVHSNG+VEEISG+I AS++MKAHPKHVLKKPSSP+S 
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNN--NNK 120
               D  SA  KIVIVPPEA+LQRGKIYFLMP   + DK       RR+K   N     +
Sbjct: 61  HDERDVISA-TKIVIVPPEAELQRGKIYFLMPATKS-DKCAGGGKIRREKSNANAVVKKR 120

Query: 121 NNHHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRERR 180
           + +           +     D  D N   +  IS      SD+YL+EILSEK +T ++RR
Sbjct: 121 SQYRRQHRDGDEKCNGGESNDVKDKNYEKDLLIS------SDRYLTEILSEKVATQKDRR 180

Query: 181 RGRVGVWRPHLESICE 195
           +GRVGVWRPHLESI E
Sbjct: 181 KGRVGVWRPHLESISE 188

[Close]

BLAST of CmaCh13G006020 vs. TAIR 10
Match: AT1G06980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-27
Identity = 78/200 (39.00%), Postives = 112/200 (56.00%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           M NS+RCC++C+LPCGALD+IRIVH NGYVEEI+ SI A ++++A+P HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCS---- 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSRRKKRVTNNNNKNN 120
                    + KI+I+ PE++L+RG IYFL+P    P+K R R  + R+K+   N     
Sbjct: 61  ------QGVVRKILILSPESELKRGSIYFLIPDSSLPEKKRRRKDTPRRKKNLQN----- 120

Query: 121 HHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKAS--THRERR 180
                  P+A A+      D +             + + ++YL E++S  ++   HR RR
Sbjct: 121 -------PSADAAGREIKGDEE------------CVKLCEKYLEEVVSSASTGKEHRHRR 166

Query: 181 R----GRVGVWRPHLESICE 195
           R      V  WRP L+SI E
Sbjct: 181 RHSRSASVSTWRPLLDSISE 166

[Close]

BLAST of CmaCh13G006020 vs. TAIR 10
Match: AT2G30230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06980.1); Has 167 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 118.2 bits (295), Expect = 7.3e-27
Identity = 74/201 (36.82%), Postives = 113/201 (56.22%), Query Frame = 0


Query: 1   MRNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSPSSS 60
           M NS+RCC++C+LPCGALD+IRIVH NG+V+EI+  + A ++++A+P HVL KP S    
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCS---- 60

Query: 61  AACADDASALPKIVIVPPEADLQRGKIYFLMPLPPNPDKPRSRSSSR---RKKRVTNNNN 120
                    + KI+I+ PE++L+RG IYFL+P    P+K +++       RKK + + N+
Sbjct: 61  ------QGVVRKILILSPESELKRGSIYFLIPDTSMPEKKKTKKRKELRCRKKPLESGND 120

Query: 121 KNNHHSDRTPPAALASATADTDDNDDNNNNNSSISMSNLHVSDQYLSEILSEKASTHRER 180
            N+ H          S   D D +         +++   ++ D  LSE +S     +R R
Sbjct: 121 INSDH---------VSTNKDLDGH--------CLTLCEKYLEDVMLSEKMSSAGKENRHR 174

Query: 181 RR----GRVGVWRPHLESICE 195
           R+      V  WRPHL+SI E
Sbjct: 181 RKHSRSASVSTWRPHLDSITE 174

The following BLAST results are available for this feature:

BLAST of CmaCh13G006020 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G006020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLR7	1.5e-104	100.00	rhoGEF domain-containing protein gxcI-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5A7UMG1	4.9e-71	76.88	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3B8G2	4.9e-71	76.88	uncharacterized protein LOC103486913 OS=Cucumis melo OX=3656 GN=LOC103486913 PE=...	[more]
A0A0A0M094	7.1e-70	77.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G471460 PE=4 SV=1	[more]
F6HM99	9.6e-59	63.45	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_10s0003g01310 PE=4 SV=...	[more]

BLAST of CmaCh13G006020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001645.1	3.1e-104	100.00	rhoGEF domain-containing protein gxcI-like [Cucurbita maxima]	[more]
KAG6583958.1	8.2e-97	96.48	hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019577.1	9.1e-96	94.00	hypothetical protein SDJN02_18538, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023519997.1	4.8e-89	92.42	uncharacterized protein LOC111783307, partial [Cucurbita pepo subsp. pepo]	[more]
XP_008443296.1	1.0e-70	76.88	PREDICTED: uncharacterized protein LOC103486913 [Cucumis melo] >KAA0057042.1 DUF...	[more]

BLAST of CmaCh13G006020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29195.1	7.8e-45	56.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G06980.1	1.5e-27	39.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G30230.1	7.3e-27	36.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 3..194 e-value: 6.9E-36 score: 124.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..155
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 1..197
None	No IPR available	PANTHER	PTHR33052:SF3	OS01G0758500 PROTEIN	coord: 1..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G006020.1	CmaCh13G006020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding