CmaCh13G005170 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G005170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionBEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
LocationCma_Chr13: 5472473 .. 5472760 (-)
RNA-Seq ExpressionCmaCh13G005170
SyntenyCmaCh13G005170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCACATCTCGATTGGCCAGATTCATAAGCGAAGCTTGCCCTCCCCAATTCGTCTCTGTAATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAATGAAGAAGATCACAGAGAAGCTCTCTCCTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCGCTGCCGTCCACCATGGCTGCTTCTCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTTTCTCAATCAGGTCCCCTTGAGGTCCTTCTCCCTTTTCGAGCACTGA

mRNA sequence

ATGGCAGCCACATCTCGATTGGCCAGATTCATAAGCGAAGCTTGCCCTCCCCAATTCGTCTCTGTAATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAATGAAGAAGATCACAGAGAAGCTCTCTCCTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCGCTGCCGTCCACCATGGCTGCTTCTCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTTTCTCAATCAGGTCCCCTTGAGGTCCTTCTCCCTTTTCGAGCACTGA

Coding sequence (CDS)

ATGGCAGCCACATCTCGATTGGCCAGATTCATAAGCGAAGCTTGCCCTCCCCAATTCGTCTCTGTAATGAGGCGCAGAAGCCCCAAAGTTCTAGACACCATTAATGAAGAAGATCACAGAGAAGCTCTCTCCTCCTCTTCCTCCTTGAAGATCGACAAATTCTCTGTTTCTTCGCTGCCGTCCACCATGGCTGCTTCTCCGCCTTCTCCTGCAACTTCCGCCGCCGTTAATTCCAAATACTTTCTCAATCAGGTCCCCTTGAGGTCCTTCTCCCTTTTCGAGCACTGA

Protein sequence

MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPSTMAASPPSPATSAAVNSKYFLNQVPLRSFSLFEH
Homology
BLAST of CmaCh13G005170 vs. ExPASy TrEMBL
Match: A0A5A7UJX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00970 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.5e-28
Identity = 77/97 (79.38%), Postives = 82/97 (84.54%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEED RE+L+SSSS KIDKFSVSS P
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLASSSSFKIDKFSVSSPP 60

Query: 61 STMAASPPSPATSAAVNSKYFLNQ--VPLRSFSLFEH 96
               SP S A +AAVNSKYFL+Q  VPL  FS+FEH
Sbjct: 61 -----SPASSAAAAAVNSKYFLDQVPVPLGPFSIFEH 92

BLAST of CmaCh13G005170 vs. ExPASy TrEMBL
Match: A0A0A0LYE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.9e-26
Identity = 74/98 (75.51%), Postives = 81/98 (82.65%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEED REAL SSSS KIDKFSV    
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSV---- 60

Query: 61 STMAASPPSP-ATSAAVNSKYFLNQ--VPLRSFSLFEH 96
               SPPSP +++AA+NSKYFL+Q  VPL  FS+FEH
Sbjct: 61 ----PSPPSPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

BLAST of CmaCh13G005170 vs. ExPASy TrEMBL
Match: A0A314XQS6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10926 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 55/101 (54.46%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDH------REALSSSSSLKIDKF 60
          M A SRLARFI+E  PPQFVSVMR R+ KVLDTINEE+        ++L SSSS K    
Sbjct: 1  MMANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSFKGCAC 60

Query: 61 SVSSLPSTMAASPPSPATSAAVNSKYFLNQVPLRSFSLFEH 96
          S SS PS   AS  S A +A   SKYFL +V  R+FS+  H
Sbjct: 61 STSSPPS--FASAASGAAAAGTESKYFLKEVH-RAFSMLSH 98

BLAST of CmaCh13G005170 vs. ExPASy TrEMBL
Match: A0A803R962 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEE-------DHREALSSSSSLKIDKFS 62
          A +R+ARFI+E  PPQFV+VMR R+ KVLDTI EE       D + A SSSS+      S
Sbjct: 2  ANARIARFITEVAPPQFVTVMRHRTTKVLDTIKEEERDVCGNDSKVAFSSSSASPSTSTS 61

Query: 63 VSSLPSTMAASPPSPATSAAVNSKYFLNQVPLRSFSLFEH 96
           ++  S+ A S  S ++S +++SKYFL  VP+  FS+FEH
Sbjct: 62 TATSASSRARSCSSSSSSGSMSSKYFLKDVPM--FSIFEH 99

BLAST of CmaCh13G005170 vs. ExPASy TrEMBL
Match: A0A6J5WYZ3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS25601 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 54/100 (54.00%), Postives = 65/100 (65.00%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          A SRLARFI+E  PPQFVSVMR R+ KVLDTINEE+   A +S  SL      +SS PS 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSYDSL------ISSSPSK 61

Query: 63 MAA----SPPSPAT---SAAVNSKYFLNQVPLRSFSLFEH 96
            A    SPPS A+   +A  +SKYFL +V  R+FS+F H
Sbjct: 62 GCACSTSSPPSFASGSAAAGTDSKYFLKEVH-RAFSMFGH 94

BLAST of CmaCh13G005170 vs. NCBI nr
Match: KAG7019500.1 (hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 2.1e-34
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60

Query: 61 STMAASPPSPATSAAVNSKYFLNQVPLRSFSLF 94
          STMAASPPSPATSAAV+SKYFLNQ    S S F
Sbjct: 61 STMAASPPSPATSAAVSSKYFLNQFQWPSESAF 93

BLAST of CmaCh13G005170 vs. NCBI nr
Match: KAG6583880.1 (hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.3 bits (347), Expect = 3.5e-29
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60

Query: 61 STMAASPPSPATSAA 76
          STMAASPPSPATSAA
Sbjct: 61 STMAASPPSPATSAA 75

BLAST of CmaCh13G005170 vs. NCBI nr
Match: KAA0054015.1 (hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK20701.1 hypothetical protein E5676_scaffold480G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 77/97 (79.38%), Postives = 82/97 (84.54%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEED RE+L+SSSS KIDKFSVSS P
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLASSSSFKIDKFSVSSPP 60

Query: 61 STMAASPPSPATSAAVNSKYFLNQ--VPLRSFSLFEH 96
               SP S A +AAVNSKYFL+Q  VPL  FS+FEH
Sbjct: 61 -----SPASSAAAAAVNSKYFLDQVPVPLGPFSIFEH 92

BLAST of CmaCh13G005170 vs. NCBI nr
Match: KGN65872.1 (hypothetical protein Csa_023250 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 8.1e-26
Identity = 74/98 (75.51%), Postives = 81/98 (82.65%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60
          MAATSRLARFISEACPPQFVSVMRRRSP+VLDTINEED REAL SSSS KIDKFSV    
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSV---- 60

Query: 61 STMAASPPSP-ATSAAVNSKYFLNQ--VPLRSFSLFEH 96
               SPPSP +++AA+NSKYFL+Q  VPL  FS+FEH
Sbjct: 61 ----PSPPSPDSSAAAINSKYFLDQVPVPLGPFSIFEH 90

BLAST of CmaCh13G005170 vs. NCBI nr
Match: PQP93653.1 (hypothetical protein Pyn_10926 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 78.2 bits (191), Expect = 4.3e-11
Identity = 55/101 (54.46%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDH------REALSSSSSLKIDKF 60
          M A SRLARFI+E  PPQFVSVMR R+ KVLDTINEE+        ++L SSSS K    
Sbjct: 1  MMANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSFKGCAC 60

Query: 61 SVSSLPSTMAASPPSPATSAAVNSKYFLNQVPLRSFSLFEH 96
          S SS PS   AS  S A +A   SKYFL +V  R+FS+  H
Sbjct: 61 STSSPPS--FASAASGAAAAGTESKYFLKEVH-RAFSMLSH 98

BLAST of CmaCh13G005170 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 42/97 (43.30%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLPST 62
          ATSRLARFI+E  PPQFV+VMRRR+ KVLDTI EE+      S      +   +SS P T
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISS-PFT 61

Query: 63 MAASPPSPATSAAVNSKYFLNQVPLR----SFSLFEH 96
             S    + SA+ +    LN+ P+     SF +F++
Sbjct: 62 SPYSSSVSSASASASCTSGLNKFPVTENRGSFPVFKN 97

BLAST of CmaCh13G005170 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein )

HSP 1 Score: 50.8 bits (120), Expect = 6.9e-07
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 3  ATSRLARFISEACPPQFVSVMRRR--SPKVLDTINEEDHRE 42
          ATSRLARF+SE  PPQFV+VMRR   + + LDTI EE+++E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UJX75.5e-2879.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYE63.9e-2675.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1[more]
A0A314XQS62.1e-1154.46Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_109... [more]
A0A803R9621.0e-1048.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J5WYZ31.4e-1054.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS25601 PE=4 S... [more]
Match NameE-valueIdentityDescription
KAG7019500.12.1e-3492.47hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583880.13.5e-29100.00hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054015.11.1e-2779.38hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK2070... [more]
KGN65872.18.1e-2675.51hypothetical protein Csa_023250 [Cucumis sativus][more]
PQP93653.14.3e-1154.46hypothetical protein Pyn_10926 [Prunus yedoensis var. nudiflora][more]
Match NameE-valueIdentityDescription
AT1G30260.11.5e-0943.30BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein... [more]
AT4G21060.16.9e-0763.41Galactosyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35101:SF12OS02G0162600 PROTEINcoord: 2..94
NoneNo IPR availablePANTHERPTHR35101OS02G0162600 PROTEINcoord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G005170.1CmaCh13G005170.1mRNA