CmaCh12G009220 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G009220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	Cma_Chr12: 7074767 .. 7075037 (-)
RNA-Seq Expression	CmaCh12G009220
Synteny	CmaCh12G009220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACAGGCATCCCAGGTAATTCAGTCTTATGGTTCTTCATTATCTGCATATGGCCTGATTTTTCTAGGGGCTCATTTTGCATGGGCTTTTAGTTTAATGTTTCTATTCAGCAGGCGTGGTTATTGGCAAGAACTTATTGAATCCATCATTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTGTCCAAGGACGTGCTGAAGGAGTAACTCATTACCTTCTGGGTGGAATTGCCACAACATAG

mRNA sequence

ATGGGCACAGGCATCCCAGGGGCTCATTTTGCATGGGCTTTTAGTTTAATGTTTCTATTCAGCAGGCGTGGTTATTGGCAAGAACTTATTGAATCCATCATTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTGTCCAAGGACGTGCTGAAGGAGTAACTCATTACCTTCTGGGTGGAATTGCCACAACATAG

Coding sequence (CDS)

ATGGGCACAGGCATCCCAGGGGCTCATTTTGCATGGGCTTTTAGTTTAATGTTTCTATTCAGCAGGCGTGGTTATTGGCAAGAACTTATTGAATCCATCATTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTGTCCAAGGACGTGCTGAAGGAGTAACTCATTACCTTCTGGGTGGAATTGCCACAACATAG

Protein sequence

MGTGIPGAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLLGGIATT

Homology

[Close]

BLAST of CmaCh12G009220 vs. ExPASy Swiss-Prot
Match: Q3V534 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-30
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPATQPRALSIVQGRA GVTHYLL
Sbjct: 673 GAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLL 732

Query: 67  GGIATT 73
           GGIATT
Sbjct: 733 GGIATT 738

[Close]

BLAST of CmaCh12G009220 vs. ExPASy Swiss-Prot
Match: A4QJB5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=434059 GN=psaA PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-30
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPATQPRALSIVQGRA GVTHYLL
Sbjct: 673 GAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLL 732

Query: 67  GGIATT 73
           GGIATT
Sbjct: 733 GGIATT 738

[Close]

BLAST of CmaCh12G009220 vs. ExPASy Swiss-Prot
Match: A4QJJ9 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=72657 GN=psaA PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-30
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPATQPRALSIVQGRA GVTHYLL
Sbjct: 673 GAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLL 732

Query: 67  GGIATT 73
           GGIATT
Sbjct: 733 GGIATT 738

[Close]

BLAST of CmaCh12G009220 vs. ExPASy Swiss-Prot
Match: Q70Y03 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 GN=psaA PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-30
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPATQPRALSIVQGRA GVTHYLL
Sbjct: 673 GAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLL 732

Query: 67  GGIATT 73
           GGIATT
Sbjct: 733 GGIATT 738

[Close]

BLAST of CmaCh12G009220 vs. ExPASy Swiss-Prot
Match: A4QK18 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psaA PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-30
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPATQPRALSIVQGRA GVTHYLL
Sbjct: 673 GAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLL 732

Query: 67  GGIATT 73
           GGIATT
Sbjct: 733 GGIATT 738

[Close]

BLAST of CmaCh12G009220 vs. ExPASy TrEMBL
Match: A0A4Y7JYS7 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Papaver somniferum OX=3469 GN=C5167_008618 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.3e-29
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 4   GIPGAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTH 63
           GIPGAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPATQPRALSIVQGRA GVTH
Sbjct: 275 GIPGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTH 334

Query: 64  YLLGGIATT 73
           YLLGG ATT
Sbjct: 335 YLLGGSATT 343

[Close]

BLAST of CmaCh12G009220 vs. ExPASy TrEMBL
Match: K9ZW81 (Photosystem I P700 apoprotein A1 (Fragment) OS=Balanites maughamii OX=66625 GN=psaA PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.1e-28
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 2  GTGIPGAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGV 61
          G   PGAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPA QPRALSIVQGRA GV
Sbjct: 3  GLFFPGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAXQPRALSIVQGRAVGV 62

Query: 62 THYLLGGIATT 73
          THYLLGGIATT
Sbjct: 63 THYLLGGIATT 73

[Close]

BLAST of CmaCh12G009220 vs. ExPASy TrEMBL
Match: A0A1Z1GAA4 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Mangifera indica OX=29780 GN=psaA PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 63/66 (95.45%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFS RGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRA GVTHYLL
Sbjct: 673 GAHFVWAFSLMFLFSGRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAVGVTHYLL 732

Query: 67  GGIATT 73
           GGIATT
Sbjct: 733 GGIATT 738

[Close]

BLAST of CmaCh12G009220 vs. ExPASy TrEMBL
Match: A0A2S0DU88 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Dioscorea polystachya OX=55575 GN=psaA PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 63/66 (95.45%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFS RGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRA GVTHYLL
Sbjct: 673 GAHFVWAFSLMFLFSGRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAVGVTHYLL 732

Query: 67  GGIATT 73
           GGIATT
Sbjct: 733 GGIATT 738

[Close]

BLAST of CmaCh12G009220 vs. ExPASy TrEMBL
Match: A0A6G7IWP5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aesculus chinensis OX=290911 GN=psaA PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 63/66 (95.45%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFS RGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRA GVTHYLL
Sbjct: 673 GAHFVWAFSLMFLFSGRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAVGVTHYLL 732

Query: 67  GGIATT 73
           GGIATT
Sbjct: 733 GGIATT 738

[Close]

BLAST of CmaCh12G009220 vs. NCBI nr
Match: MQL94995.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  MGTGIPGAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEG 60
          MGTGI GAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPATQPRALSIVQGRA G
Sbjct: 1  MGTGISGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVG 60

Query: 61 VTHYLLGGIATT 73
          VTHYLLGGIATT
Sbjct: 61 VTHYLLGGIATT 72

[Close]

BLAST of CmaCh12G009220 vs. NCBI nr
Match: RZC64928.1 (hypothetical protein C5167_008618 [Papaver somniferum])

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 4   GIPGAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTH 63
           GIPGAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPATQPRALSIVQGRA GVTH
Sbjct: 275 GIPGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTH 334

Query: 64  YLLGGIATT 73
           YLLGG ATT
Sbjct: 335 YLLGGSATT 343

[Close]

BLAST of CmaCh12G009220 vs. NCBI nr
Match: KAF5774549.1 (putative photosystem I PsaA/PsaB [Helianthus annuus])

HSP 1 Score: 133.3 bits (334), Expect = 8.6e-28
Identity = 68/89 (76.40%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MGTGIP-----------------GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVA 60
          MGTGIP                 GAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVA
Sbjct: 1  MGTGIPGNSVLWFFIIRIWPFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVA 60

Query: 61 PATQPRALSIVQGRAEGVTHYLLGGIATT 73
          PATQPRALSIVQGRA GVTHYLLGGIATT
Sbjct: 61 PATQPRALSIVQGRAVGVTHYLLGGIATT 89

[Close]

BLAST of CmaCh12G009220 vs. NCBI nr
Match: KAF3613787.1 (Photosystem I chlorophyll a apoprotein A1 [Capsicum annuum])

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSI+QGR  GVTHYLL
Sbjct: 214 GAHFVWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIIQGRVVGVTHYLL 273

Query: 67  GGIATT 73
           GGIATT
Sbjct: 274 GGIATT 279

[Close]

BLAST of CmaCh12G009220 vs. NCBI nr
Match: AFZ63891.1 (photosystem I P700 apoprotein A1, partial [Balanites maughamii])

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 2  GTGIPGAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGV 61
          G   PGAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPA QPRALSIVQGRA GV
Sbjct: 3  GLFFPGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAXQPRALSIVQGRAVGV 62

Query: 62 THYLLGGIATT 73
          THYLLGGIATT
Sbjct: 63 THYLLGGIATT 73

[Close]

BLAST of CmaCh12G009220 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 131.0 bits (328), Expect = 4.0e-31
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 7   GAHFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAPATQPRALSIVQGRAEGVTHYLL 66
           GAHF WAFSLMFLFS RGYWQELIESI+WAHNKLKVAPATQPRALSI+QGRA GVTHYLL
Sbjct: 673 GAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIIQGRAVGVTHYLL 732

Query: 67  GGIATT 73
           GGIATT
Sbjct: 733 GGIATT 738

[Close]

BLAST of CmaCh12G009220 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-11
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 9   HFAWAFSLMFLFSRRGYWQELIESIIWAHNKLKVAP----ATQPRALSIVQGRAEGVTHY 68
           H  WA   MFL S RGYWQELIE++ WAH +  +A       +P ALSIVQ R  G+ H+
Sbjct: 654 HLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHF 713

Query: 69  LLGGIAT 72
            +G I T
Sbjct: 714 SVGYIFT 720

The following BLAST results are available for this feature:

BLAST of CmaCh12G009220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V534	4.3e-30	93.94	Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA...	[more]
A4QJB5	4.3e-30	93.94	Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=4340...	[more]
A4QJJ9	4.3e-30	93.94	Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=726...	[more]
Q70Y03	4.3e-30	93.94	Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 ...	[more]
A4QK18	4.3e-30	93.94	Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psa...	[more]

BLAST of CmaCh12G009220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y7JYS7	8.3e-29	92.75	Photosystem I P700 chlorophyll a apoprotein A1 OS=Papaver somniferum OX=3469 GN=...	[more]
K9ZW81	7.1e-28	88.73	Photosystem I P700 apoprotein A1 (Fragment) OS=Balanites maughamii OX=66625 GN=p...	[more]
A0A1Z1GAA4	1.2e-27	95.45	Photosystem I P700 chlorophyll a apoprotein A1 OS=Mangifera indica OX=29780 GN=p...	[more]
A0A2S0DU88	1.2e-27	95.45	Photosystem I P700 chlorophyll a apoprotein A1 OS=Dioscorea polystachya OX=55575...	[more]
A0A6G7IWP5	1.2e-27	95.45	Photosystem I P700 chlorophyll a apoprotein A1 OS=Aesculus chinensis OX=290911 G...	[more]

BLAST of CmaCh12G009220 vs. NCBI nr


Match Name	E-value	Identity	Description
MQL94995.1	4.1e-30	93.06	hypothetical protein [Colocasia esculenta]	[more]
RZC64928.1	1.7e-28	92.75	hypothetical protein C5167_008618 [Papaver somniferum]	[more]
KAF5774549.1	8.6e-28	76.40	putative photosystem I PsaA/PsaB [Helianthus annuus]	[more]
KAF3613787.1	1.5e-27	93.94	Photosystem I chlorophyll a apoprotein A1 [Capsicum annuum]	[more]
AFZ63891.1	1.5e-27	88.73	photosystem I P700 apoprotein A1, partial [Balanites maughamii]	[more]

BLAST of CmaCh12G009220 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	4.0e-31	92.42	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	1.6e-11	49.25	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 7..72 e-value: 3.8E-34 score: 118.0
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 2..72 e-value: 2.8E-36 score: 126.5
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 5..72
IPR006243	Photosystem I PsaA	PANTHER	PTHR30128:SF61	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1	coord: 6..58
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 6..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G009220.1	CmaCh12G009220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0046872	metal ion binding