CmaCh12G008850 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription initiation factor TFIID subunit 4b-like
Location	Cma_Chr12: 6701091 .. 6716401 (+)
RNA-Seq Expression	CmaCh12G008850
Synteny	CmaCh12G008850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTAGATTTGTCGTTGTGTAAGGCACTTTTCAAAGCAGTGTCTTCTAAGCAATTTTTAGAAGTTATATTGTTGGATTGCCTGCAAGCAAGTTAACGTTACCCCGGTTGATTGCACATATAGCTTGTTATGGACCCCTATATTATGAAGCTTCTGGAAGATGACGAGGTTTTGTATCTTTTATTGCTTGTGTGTAAATGTTTATCCTAGGATTGAGGGGATATCATTTGTAAATCTTTATCATATTGGACATTTGGCTATGAACAGGATGAAACAATGCATTCAGGTGCAGTTGTGGCGGCTTTTCAGGCTGCCTCGAATAGAGAGATAGAAGGTGATGTTCCGACCGTTTCCCAGACTAATGCATCAGATACAGGTATACTTCAGCCTAAACTTAGAAGTTGAACTTTTGTACATAGATCTTGGTCAGAATAAATAACAAGAGAGGCTAAGACTCGTAGAGATCATATCAAAATGTGCATTTGCGGAAATGTGCTGTCTATGAAAGAAATTTTCTATGATTTTAATTATTTGGAGGTTCAAATTTTGTTTTACCTGGATATCCGATTGTTTCTTGTTAAATACACGTATAATGCCTTTCCTGTGGTATATAAATTTAAGTGAATAAATTGCTATTTCTCAAGTTAAAATGATTCATGTCTTGGTTCCAATGAGTTGGATATCAAATCAGCGAGAAAATGGCCGCTTTAGTATTGTTTTGGTGGAAACTTTTGGGAAGATTTCACAGTTTACCATTGATTTTGAAATGTTGCAATTTTAGGTTCCCACTTTTTTCACGCATTTTCTTATAATGAGCTTTCTTCTGGCTTTTCAATTCCTCCAATCTTATACTGGCTTGTCATATATTTGCTCAAACTGCACTTTTTTTCCCAGTAAATGATGAAAATTTGCTGTAACTGTAATAAAAAAATGTGTTTGAACCCAAGCATAAAACTTTCCATTGAGTGGCTTTGGGTGTTCATATTGAAATTGATCTGATATCTGTGACTAAATATGTAGCCTTCTCTGGTGGGAACAATGGTTCTTCTGGCCTCTTGCTACAAGCTTCTAGTCAAAATAAAAATACTGAATCTCATGTCCAACTAGATCAAAATTTTCGTTTGAAGCAAGAACAACATTCATCTCTGATGGAACCAGAGCGATGTACATCAGTACCTGAAAATCAGCAGCAACACAATGCTGCCCCCCTCCGAGCTTCAAAGAACCAACCCCATGCAGATCGTGAACAAGGGGAGGTAGAACAAGTTTCTGCTCAGTTTTCTCAAACAGAAGGACTGCAAGTTTCTGAACAAGTTCCAATCCTCATGAATAACTCAAACAGAATGCAGTACCCGGACAATGAATCTCAATACTTGAAGTTACAAAAAATGAGTAATCAGGAGGCAATGGTCTCGGAACAGGCAAATAACTCATTAAATCGTAGCAAACAGGTACCTTTTGCCTCGTTGATGCCTGTATTGATGCCTCAGCTTGATAAAGACAGAGGCATGCAACTTCAGAGTTTATTCAACAAATTGAAAGTAAGTACACGAGTAGAGGACATTCTGTTATTGCTTATAACTGTCACATCACATGTAAAATTTAAGTTAGATGTTAAGAATCCGCCCTAAGCGAAGGACTAACTGGAGAAGTCGTAGGGTTGTTATTTACCACATTGATCTGTGTCATTTCATATTCCTTCGTAGTATGCAGGTTTTAAGTCAATTCTTTATAAATGCATCGTTCCATATGTGAGTCTATTGGTACGTACCCTCAGATTATACTCTATACATGGGGTCTTGTTCGTGTGATGGTGCCTTTCTCTATTCTATCTTTTTAAATTCTGACATATCTTAAAAAATGGTTGGATAATTCTTTGTTGTATTGGCTGTCTCATATAATTGTAACTTGTATTTTAGAGGAATGAAATGAACAAAGATGATTTTGTCCGGTGCATCAGGAGTGTTGTGGGCAATCAGATGCTTAGATTAGCAGTTAGTCAAGTACAATCTCAGGTCAGCACTAACTTGATTTCTTGTCATGAGGGTTTTATTATGTATATATTGATTACTTTAAATCAGAGTCTGTCCGTGAGTTTTGTTACCTTCCTCAGGTTCCTGTCTTAAACCTTTTCATTTACAGCCTCCACCTTCAGTAAGGCAACCTTCTCCTAGAATGCCATCTATGGGTGCCGGTGCACCAAATTTCTCTGATTCACGACCATTTGCACGACTTCATCAGAAAGGCATGAATTCTCCTGCAGTTCAATCGTACATACCTTCTTCAGCATCCCAAGGGCAGAGTAGTTCATGGTACCCTGCGATAGACAAGAATATAAAATCTTCACGAGAAGTCGAACAGCGACCTGATGGTGTAAATCAATGGACTTCATCTAGTTCAGGCACCATTCAGGAAAGGAAAGGCTCCTCAGTTCCTGTTTCAGGACTCGAGAAGCAGAAGCTACACTTACAACAGAAATCGTTTTCCATGTATGGAAACAGTGGTAATTACCACCCGTATACTGGGTCTAGCATAAATGCCTCTTCATTGTCTTCTAAACCCCAAACTCACGAGGGTCACGTGAAGCAAATTCCCCAGCAGGCTCCTAATCTTGGCAGGCAAGTTACCATAGATGATTCCAAGCGAGTGCAGGGTGGAAATGTTCCACACTTGCACAACAACTTAACTGCACAGCAAAATTCAGTTTCTTGGAAATCCTCAATAAGTAAAGAGCAGAATACAGGCCCTTTGTCATCGATGAGTTACATTAAACAACAATCTTCTGGTCAGGTTTCTGAGCAGAACAAACCCCAACTTTCAAATTTGCAGGGATTGTCTTCTGTTTCTAGCATGCAGGCTGAACACGTTAAAACAACCCCTGGAATTGGGAAGGACGCTCTTGAAAAACAAACTTCTAAAATGGGTTTTCCTATAAACAATGTTATGCCTCCAACATCTGCCAACGCGGAAAATTTAATTTCTTCTGATGCCAGTTCTCTAGATGACTCTAATGCTGTGGTATGCATTGCTAGATTGTACGTTAGTCCTACATTTAGTTATGTAAAAGTCAATTGCATGCTTATGTTCGACTGTATATTTCTTATGTCAGTCAGTAATCTTATACCTTTTTGAATCTCTGTCCTAATATTTCATTTTCCATGTTATAACTTTCTTTATTCCTGGTTCATCCATTTCCTAGCATAATCTTCTCTGTTGCAATAAATTATTTAAGTTAATATATGTATTAAATGGTTGAATAGGTACCTGCTCTGCTTTGTCTTTATATATCTTCGTGAAGAATGTACATCGCTCAATCTTATGCTCCTGGCTTGCTCTTATGATGTATCAGTTGTTTGCAGACTAATTAAATCTTTATTTATCTTTTATTATTATTTTTTTATTTTGCAGTTAAGCTCTCAGGTGCCTTCTGCAGCTACTCCTGGAATGCAAGATAGGGCACCTCAAATAAAAGCAGTCGTTGGCCAGAAGAAGCCTCTTGAAACACTTGGCTCTTCACCACCCCTACCAAGGTGAATCTACTTTTTCTCGTCTTAAATACAGGAAGTGAAAATTGTTTTGGAATATTTAAAAATAAATGGGTTGATTCACAATTAAGATCGATCTTTTCAAATACAATTGACGTGTACCCAACAGTAAGAAGCAAAAACTATCTGGGGCATTTTCGGATCAAAGCATCGAACAACTTAACGATGTCACTGTAGTCAGTGGAGTTAATATTGAGGTACAATCTCATATTTCATGAATGGTTAGTTGCAGTTGGTACTAAAAAACATGAATCCTTAAAAAATGTCTGGTTTTGACCAGGAAGAAGAAGAACAACTATTTTCTAGTGCAAAGGAAAATAGTCGAGCTTTTGAAGCATCACGAAAGGTTGTACAAGAAGAAGAGAGACTACTATTTCAGAAAGGCCCATTGCAGAAAAAGCTGGTGGAAATCAGTGAGTGTCCAATTCTTTAATTAATATTCAGTTTGTTGTTCTGTTCACCTCCCCCACCCAACCCAAAGGCGGTTGAGATATGATTTAAAGTATTCAAAATGAAGATATGATTTAAAGTAATTGAGATATGATTCAAATATTCAAACTACCAAAGATTGTAGGAGATTTTAGGAGATTGCTAGTAGATTCGAATTTATCTAGATTTACATGATTTAATTTCTGGTACAGTGTATAATAAGGTATAAATACTGTAATTATGTAACCCTCTAAGTATTAAGTCAGTAGACAATAATAAAGCATGACAACTTTCATCGATTCTATCTTTTCATATCTCTTTCACTATTCTTTCTTCCAACAATTTTGGTATCAGAGCCAGGTTCGTTCGACACGAGGGCGAGTGATTATTTTCTTTCACAAAACAAAAATGACAGTAGCTGGTTTTTCTTCCTATGCATTGTTGTTACCCATCTTTAATGGTGAGAAATATGAGTGGTGGAGCATCAAGATGGAGGCCTTGCTCAGATCGCAGGAGCTATGGGACTTGGTGGAGCACGAGTTTGTTGATGTATTAGAACCCATAATAGAAGAAAAGGAGAAACTAAGAGAAACCAAGAAAAACGATGCCAAGGCTCTATTCACTATTCAGCAAGCAGTTCATGAGACTATATTTTTACGAATTGCAGCAGCAACCACATCAAAGCAGGCATGGTCAATTCTACAAAAGGAGTTTTTAGGAGATTCAAAGGTCATGACAGGGAAATTGCAATCTATAAGACGTGATTTTGAAACTCTACTCATGACGAATGACGAATCAATTGCTGATTTTTTGTCAAGAGCAATGACAATAGTCAGTCAGATGCGTACGTATGGAGAGAAAATCTCAGACGAAACAATTGTTGCAAAGGTGTTAAGACGCTTGACTCCAAAGTTTGATCATGTGGTGGCTGCCATAGAAGAAGCTAAGGATCTATCCATACTCTCCGTTGATGAACTGATTGGCTCGCTTCAGGCTCATGAGGCAAGAATCAATAGATCATCAGAAAAGAACGAAGAAAAGGCACTTCAAGTGAAGGAGACAACCAACCACGAAAACAACGAAAGAGAAAATATTCATTTAGCAGGTAGAAGACGGAAGAGGAAGATTTCGCAACTCCATGGTGGTCGTGATAACAGGGGTAGATGGAGAAGTGATGGACAGAGACAATTCAATGAACAAAGGAATGTCATACAATGTTACCATTGTAGAAGGTATGGGCACACAAAATCTGCTTGTTGGTATAAAAATCAACGAATGAATTTTGCAGCAGAGAATGAAGAAGGAGGAAAGCTGCTTATGGCGTGCATGAATACTAATCCAAAAAAGGGGTGACTTATGGTTTGTTGATAGCAGATGCTCGAACCATATGACAGACACCAAATCTTTATTCAAAAAGCTTGATGAGACCAAAAAAATTAAGGTGCAACTTGGAAACACAAAAGAGATGCAAGTTGAGGGAAAAGGTACAGTGAAAGTCGAAACTAATCTTGGTAAGATAAAACAATTAGATAATGTTCAATTTGTACCTGATTTAGGGTACAATTTATTGAGTGTTGGACAATTGATGACAAGAGGACATCCAGTTCTATTTGATGACAAACACATGTGTCATTACACATAAGAAATCAGGCCATTAAAGTTCAAATTGCCATGACTTCAAATAAGATGTTTCCACTTTATGTTTCTAACATGGAGGATTTTGATCTTACTGCTAGCACGAAAGATAGACTCAACATTATGGCATCTCAGATATGGACATTTTCATATGAACGACTTAAAAATACTCAAGGATAAAAGTATGGTTTTTATGGTTTTCGGATTACCAAGAATTGATTCAACTAATTTGTGTGAAGGATGCATTTATGGCAAGCAGACTAGGAAGTCCTTTCCCGTTGGAAAAGCTAAAAGAGCTTCACATTATCTAGAACTAATTCATGCTTGATTCATGTGGGCCAATGCAAACGAAGTCCTTGGGTGGGAGTACATACTTTTTGCTATTCTTGGATGACTATAGTCGCATGAGTTGGGTTTACTTCCTAGAAACTTTTCAGAAGTTCCAGATTTTTAAAGCTATGGTGGAGAACCAAAGTGGCCGTCACAATAAAGTTCTTCGCACAGACAGAAGTGGCGAGTTCATATCTAAAAAGTTTAATCTCTTTTGTGAAGAAGAGAGCATCCAAAGGGAGTTAACAGCTCCCTACACTCCAGAACAAAATGGAATCGCTGAACGAAAAAATCGAACCATTGTGAGATGGCAAGAAGTATGTTACAAGCAAGGAGACTTCAAAACTAATTTTGGGCAGAAGCCATAGCAACATCTGTTTATTTATTAAACCTCTCACCAACAAAGGCTGTTATGAATCGAACTCCTTATGAAGCATGGCATGGAAGGAAACCATATGTAAGTCATTTACGAATCTTTGGTTGTGTTGCTTATGCTTTGAAACATCTTCAAGTTTGTCTAAAGCTTGATGAAAAATCTGAAAAATGCATTTTCATTGGCTATTGTACTCAATCAAAGGCATATAAATTATATGCCCACATCAGTGAAAAGATTTTAGTTATAAGGGATATAATATTTAATGAAAACACGAGTTGGGATTGGAGTAAAGAACAGGAGCAGCGAAAGATTACAGTTGAAGTTCCTCCAAACAAAGAGACAAGGGTCAACTCCAGTGCATCTCCTAGTGCCTCCACTGCAACACAAAATGTGTCAAATTCATCATCTTCAGCATCACTAAACAGCGATTCTTCTCTTGAAGAACTTTCGGATGAGACACCTTCAAGAAAGTATAAATCTTTAGCTGACATATGTGCATCATGTCAATTTTCTCTTACTGTTTCAGACCCTATGAATTATGAAGAAGCAACTGAAAGAAGACGGGAAGAAAGCTATGGCAGTAGAGTTGCAGTCCGTTAAGAAAAATGGAACATGGGATATGGTTGACTTGCCAAACGAAAAGATCTATGAAGATTTACATGGGACATGCAGCCTATTGCGGTGGCCTGTTTATCAGTTGATGGAGATTTACAAGGGGGAGTGTTGTGTAACACCGTCAGAGGGATTCATAAAGGAAGACAAAAAAACAAAGATATACAAGCTGAGACAGGCATTGTACGGGTTAAAACAGACATACTTACGAAGGCCTTGTCGAAAGAAAAGCTCGGTACTTGACATTAGAAACTTTGAATCAAGGGGGAGTGTTGAGATATGATTCAAAGTATTCAAAGTGGAGATATGATTTAAAATAATTGAGATATGATTCAAATATTCAAACTACCAAGATTTGAGGAGATTGTTAGTAGATTTGAATTTATCTAGATTTATGATTTACTATTTCTGGTAAGGTATAAATACTGTAATTATGTAACCCTCTAAGTATTAAGTAATAATACTCTAAGTATTAAGTAATAATAAAGCACGGCAGCTTTCATCGATTCTATCTTTTCATATCTCTTTCACTATTCCTTCTTCCAACAAAGGCCACCGTTCCCCACCTCACTATTCGATCTTCACACCCACCCATCTTAACATACGATTTATTACCTCTTTCTTTCCCAATCCACAAGTTGTGACATCATCACCATTAAAAACCAAAAAACATTCCTAGTCCGAGGAACAAAATTTTCCACCCTTGGCCTCACCTAGACTCCAACGAGGAGTACGCCTCTAGTCCTCTTCCCCATTCCACTCCCCTCCATCTCATATTGCGGGATTATCCAATCATTCTCTCCCACCGCCAGAGATTATCCTCTTAAATACAGAGCTTGACAATGTTCTAGAAAAATAGAGCGAAACGGAGGCATAAGAAGTCCTCTAATCTCAGTGAAACTCACAACAATAGCAACCGTCTAAATTCTGGCACCATGCCTAAAAGAACACGGCATGAGCTTAATGGCCATTCCATCTACAAAGAAAAGGCCCACTACAGTTGAGAAACAGAGCCGAATTGACTATAGAGATTGTGGGCCTCCTCTCGAACGTCAATTATGATAAAAATCCAACATGACTCAATCGAGTGATCCAGACTATTTTTTTTATTATCATCTCTTGAAATGTTAAAGGCTTGGGAGACTGGCAGGGGAGTCCTCATCAAGACCCTCCTCAAATTCAACCCTACAATGATCATTCTTCAAGAAACAAAATTGAATTTTGTCAACCGTTGGATTGTTAAATTCCTTTGGTGTGCTAGACATATAGGTAGGACATCTTTGGATACTTCCAAACATCAAGGGGATCTTAATGATGTGGAATAATCCAACTTTGATCATCTCCAAAGTCGCCAAATGTCTGTACACTCTAACCACACATGTTTCTTTGGCTGACGGTTACAGTTATGGATCAGGGACCATAGGATCTATGATCCCTGCAGATACCAAGAAGCACCTGTCTTTTGGTAGGAATTGTTGGACCTTTCTTGCTTTTGCCCAAAAGTTGAATGTTGGCCAGTGACTTCAATACCTGTCGATGGGCACATAAAAAATTTAGTGGAAAAGTTTTAAGGGGATTGAGACTTTTCAATAATTTCATAAGAGAAGCTGATCTCATTTATCTTCCACTTAGTATGGTCTTTATTCTTGGCTGGATAACAGATCCCCGTCCACCCTGGCACTCATTGACAAGTTTTGGTTAGGTCTCCTAGGAAAGTTTAGTAATGTAGGAGTCCAATGACTTAACAGACCGACATTAGATAATTTTTCCATTGTGCTTTCTATGGGTTGATTCAAATGAGGCCCTTCGCCCTTCCATTTTGATGTGGTTAGAGCAGACTGATTTTTTGCCCATGGTTGAATACTGGTGGAAGAACACGCCCCTTCGTGGGTGTATGGAGCACAAATTCTTTAACAAACTCGAAGGGCTCAAAGAATTCATCGAGAAATGAAACAATAAGGTCTTCATTGTATTTCTAGAAAAAGAAACCAGATCCTTACAAAAAGCTCTTCTTGACCAAACCATTTTTGTAGAGGGACGGCAGATCCTAGATGCATCCATTCTGACAAATGAACTTATCGATGAATGGAAAATGAGAAACAAAAAGGTACAATCATTCAACTTGACATAGAAAAAGCCTTCGACAAATGAGCTTATTGGTTTTTCTTGAAACATTCTTGTAACAAAAGGTTTTGGATCAAAATGGAAGGGGTGGATAAAAGGTTTCATTTCTTCCACAAACTACTTCATTATCATCAACGGAAGACTGGGAGGAAAATTTATGCAACATGGGGTCTTCCACAAGGGGATCCAGTATTCCATTTTCTTTTCATAATGGTAATGGGTTGTCTTAATTGCTTCTTACAAAAGAAAAATATGAAGGGAAGATAAAGGGCTTCAATGTTGGCAGTAGTGAAGGCTTTAAGTATCAACCACCTATACTTTGCAAATGACATAATCCTCATCTTTGAATTAACCGATTTCTCCCCCACAAAAAACATGTTTGAGATAGTGAAAACCTTTGAAAGTTTTCATTACAAAAATCAACCTCCAAAAAATAGAGATCATGAGCTATATATCTAAAGGTGGAAGGCTCACCCTAATATAAGACACATTGTCCAATCTTCCTACTTATCACATGTCTCTGCTTGAAGTGCCTTACAAAATGACTAGAAAAATAGAAATATTATTCAGAAACTATATGTGGAAAGGTGACCTACATTTTGTCTGATGGAATACCATCAATCTCTTGCCAGACAAGGGAGGTTTTGGTCTATATTCGATGAAGGAGAAAAATAGAGGCCTCCTCACCAAATGGATATGGATGTATTTCCATGAAGGCACCACCTTGTGGAGGAACCTTATAACAACGGAATATTCTCCTACTTCGTGTACAAATTGTTCCCCTTCCTTCGGCAAAGGAACAATGGAAGTTTATAAAAAAGCACCAAAAATTCATCACCAACTGGATTCGCCATAGGGTGGGTGATGAAGGAAATACATATTTTTGGACTAACCCTTGAATCGACAACACCACGCTGTCATTGCGGTATCCTCTTTTGTACAGATTCTCACATTGCAAGGCGGTTACAATTAAAGAACTATAGAAAGGTGAACAAATTTTGAGACCTACAACTTGGTAGGATTCTAAAAGATAACGAAACATTAGAGTGAGTTGAATTAAGCCTTGACCTTGCCCCAATAGTACTATCCCAAGAAGTAGACTCATCAAAATGACTTCTTAGTGCTGACTGACTCGATGATGGATATGGGGGAAAAGTCAAATTTCATAAACCCCACACAAGCAAGACAATATTGAAATGAAATCAACCAAAAAAGATGAAGTTTTCCCAACGGAAAATTGTACACAGCCATTAGGCATAAATGAAAACCTACAAAAAAGAAAAAAAGAATGTCTTATATGACTCTATTTCCTAACTGGTGCCCTTTATGCAAGCGAGACATTGAATCACAAAATCATCTGTTTATGCCTTATAACTTTTGGATAAAGATTCTCAACACTTGTAGATGACACCTTACTTTTTCTAGGGAGGTCAAAGATTTACTCAACATGGTCCTAACGTACCATCCTTTTAAGAATGCAAAGACTTTGTTATAGTCCAACCGCATTATGGCTTTCTTTTGAAATCTTTGGAAGGAGTGAAATCAAAGTTTTCACGGAAAAGACACAAACTCATACCTGGCTCTTCGACAACGTTGTTTACCATGCTATTTCTTGGTGTATAAGCACACCTCCTTCATTGTTAATTGGGAAGATCTTTTATCAGCATCATAGATATTTTTCTTTTGTAAATTTCAAACATCAATGAAATTGTCTCATATATATATTATTTGCATTAACTGAGCAGAATGAACATCATTCTTACAGTGGTTGATTAAATGCTGATTGGTGTGTTTGTATGTGGCAGTTGCTAAATGCGGTTTGAAGGGCATGAGCAATGAGGTTGAGAGATGTCTCTCATTGGTAAGATGCTAGTCGCTCTGATCATTTTTTCAGGTGAAGTATTAACAGCCTTAAAGACAGTAACTGTATCTTCAGTGTGTGGAGGAAAGATTACGTGGGATTATTAGTAATCTAATCAGGCTGTCTAAGCAGGTCGGTGTGTTTTCTTTCATTTCCAACTCTATTTTTCTTGTGCTTCCCTCAGTTTTGTACTATATTACCGGAAGCTGTATGTTATTGCATGTTCATACTTTTTATTGATCTCTCTAGCGAGTGGACGCCGAGAAACCAAGGCACCGAACACTTATTACTTCAAATGTTCGACAACAAATCGCGTTAGCTAACCAAAAGGCCAGAGAAGAATGGGAGAAGAAACGGGGTGAAGGAGAAGAACTCCGAAGGCTTAATGATGTTAGCATTTCTTTTGCTTTCCCTGCTTACAGTCTAACCAGGGCTGTACAGTTGCATCCTTCATGTATAGCTATCAAACGTAGGATTTAGGAAAAGCTGCAGTACATTTGTTGAGCCTGTCTCTATTTGTTTGATGTAGGTTTTTAATTCTCTATCTTCATTTTTTCCAAAAATCATCTCTATTTTTTTATTGACAGTCTTTCCTCTATGAAAAAAATATTCCCTATAGCTTTGCAAAGCGAAGCTCGTTTGTCAAATATTTATGGGATGTGGTATGTCAAAACACAATATAATAATTGTACCAAGCATAATTTCCAGCAGGTGTGGTTGAAAAGAGTTTTCTTTCCCTTTCTACCTCGGGATGTGTTTTTCTTCTTCTTCTTCTACTTCTTTTTCAGTTGCAAGATTGTAACTTTTTTTCTTTTTTGATGCAGCCTGAGGATGGTCAGACGGTTGCTGTTGACACGGAGAAAGATGAAGGTCGAATGAAATCAGTTAAGGTATAGAGAGTTTACCACTTGAGACTAAACTATGACCTTTTGATTGATTAGGAATCTTGTGTTGATTTCTTTTGTGGTTTAGGCAAACAAAGAGGACGATAAAATGCGGACAACAGCAGCAAATGTTGCTGCCCGTGCTGCTTTTGGAGGAGATGACATGCTATCAAAATGGCAACTTATGGCTGAGCAGGCACGACAGAAACGTGAAGGTAGAATGGATTCAGCCTCTGGTTCTCAGTCAGGGAATGATGCTGTCCGTAAGTTTTCATCAGCAGCAGGAAGATGTAGGAAGGACAACCAAAAAGGTGAGAAAAGGTCACACCTTAAAGTCACATGCTTATATAGTCCTGGTTCTTACAGTCACATGCTTATATAGTCCTGGTTCTTAAAGTCACATGCTTATATAGTCCACTTTGCCACCCATCTAATCCAAAAAAGAAAAAGAAAAAAAAGAAAGGACCACAGTTATCCCATGTGACATCATAAAAGGATGTGGAAGTTATTGTTAGATGAACACTACTTACTCTCCACAATAGTATGATATTGTCCACTTTGAGTGATAAACTCTCATGGCTTTGCTTTGGGCTTCCCCAAATGGCCTCATACCAATGGAGAGATCTTTGATTATAAGCCCATGATCATTCCCTAAATTAGCCGATGTGGGACTTTAATCATCCAACACCTCCCCTCAAACAAAGTACGCCGTCCCTTAATCGAGACTCGACTTTTTTTTCTTTTGGAGTCCTTTGTTTGACTTTTGAGGGACTCGACTTTTTTTTCTTTTGGAGTCCTTTGTTTGACTTTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTAGGGCATGACTCTGATAACATGTTAGATAAACACTACTTTATACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAATGACCTCATACCAATCGGGAGAGTATTCTTTGATTATAAACTCATGATCATTCCTTAAATTAGCCGATATGGGACTTTCATCATCCAACCGTTATAACTAGGTTTGTTTTTAGAGACAACAATCGTGAATTCCCATTTGGATGAGGAAGCCCCCACCCAAGGAACTACATACAATTAGCTTGCCAATCCAAAGAATGGAGAGAGGGATATTACAAAAGAATTTGCCAAGAGGTATTTAACTGTACACAATCCCAAAAAAACTCAAAAGACGAAGACTTGTCTTCAAAAGTCTTCTATTTCTCTCCAGCCACAAACTCCACAAAAGAGCTCTAGAAGCGAATCTCCAAAGGGTCCCAGCTTTGTCTTCCAGCCTCCAGCAAGTGTGCAAATCAAAAAAAGCCAACCACGTCTAGGAATCAATATTTTCTGTAGCTCGAGGGCCTAGCCCTTTGTCTGGACCGAGAAAATCAAACAACTTAATGCTATGAATGAAATCATTGAACCTCATTCCTTTTGTTACTCTATCACTTTAAGACATCTCAGAGATCCACCTAACCATATTAAAATTTCCTCCAATGTATCAACAATCCACACAAAGGCCTGCAACATTGTATAACTATTGCCAAAACCATACCCTATACTGTACCTTCCATTCTAAGGCCCATAGACTGACCCTCGTTAACCAGCCATTGATACCACCATTAAAGGTAAAATCAAATAGAAATTGAAAATTCCCAGTATAACATCCTTCAACTATAGCAAATCCTCTTTTCACATGATTAAGATACCCCTGAAGAGCGAATTGCATCTAGGACAACCCAATTAATTCTTCTAGAAGACCACTCTGATTTCACTAGCCTCCTATCAACCTCCCTTCGTTTGGTTTCTTGAAAAATCACAACATCCGGGGCTCCTTAACAATTGTTCTTTGAAGGGAGCACTAAGACCTCTAACGTTCCATCAGACTATCTTCATGAGATAACTTCAATATCTTGTTTGTCTTCACAAACTTCCCCCCTACTCCCTCTGGTTCGTTCTCCCAAGTTCTCAAGATGTCATTCACCTCTCTGACGTACTTTTTAGTAGCTACACTACCTTTACCCATTGGATTGACTTTTGTAGGAATCAACCTAATGTACAATTCCATTTTTACAATGCTTTAATGGCCAACCGTCGTACTCATTTTTTTTCCTCAATAGCCAAGGTCGTGTTCTCTTCTAATGCTAATGGGAAGACGATCGAGCTAATGATGGAAAGGGGAAAACTAAGGAGATGAAGAAGATGAATGCTATGTAAAGAAGAAACGCATGTCACATACTGTGTGAGGAAGAGAGAAAACGAACGAGCAGAGGGAAGGAGGGAAGGAGGGAAGGAGAAGACAAAGAAGACATGCTAATTGTTGAGTATTGTTGAGGATTGTTGGAAGGGAGTCCCACGATTGCTAATTTAGGGAATGATCATGGGTTTATAAGTAAGGAATACATCTCCATTGGTATGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCAATACCATTGAGTCATGATTCCTAACCGAAAGAAGAAAGACAAAGAAAAAGGAGAAATGAAGGAGAAGATGAAAAGGACGAAGCTTGGGCAGAGAACTCCCCTTGGAAGGATGAACCATGAGGATGAGGCTAATAAGTAGTGTTTACAAACTTCATTTTTAAAACCAAATAGCAATCAAATAGAGCCATAGTTTATAATTTGTCTAAGAATATCATTCACTTATCTTTTCTGTTTGATCGCATTTTTTAAATTAGAGAGAGAAGAAAGAAAAGGAAAAAGAAAATAAGCAATATTTTAACCCCATCCATCTTGATTTTTCTCAGGAACTAGCAGAAGCCTTGGTAGCACCCAAATCAATGAAACTCAAACTAGGGTGGCTCGTAGTATTTCTGTCAAAGATCTCATTGCTGTTCTACTAAGAGAACCCCAGATGTGTAGATCCACCACAATATATCGTTCATACAACAGAGTTCGTGCTGAAGCAACCGACGAATAGAATCGACTACAATGAGGAAACTAGCATCCTTGCAGAATTGAGGTACTCATATATGGTAAACTGTACAGGGTCGAAAATATAACTGCTTAAGTCGGTAACTGCTGCAATAACAATCAGGAAAGGACTTTCTCAAGATCTTGTGCAGATTAAAGAGACTCTTGTTCAGAGTTTGTGCAGATCTTTCAAAGGAAAGGGGAAAAAAGTTCCTTTGAATCAATAAAAAGTGGAGTTTGGGAACTCTATTAAGAAAAAAAAAAAAAAGAGGTTTTTAGGATAGTTTAGATGTTAGTTGTTATTTTTAGGTTTCAAATGAAGTATTCTTTGTAAACCTTTTAGCACCTACAGTGCTATTATGATGATAGTCTACTAATAGGACTAAATTGGTTCAATTCTTTCTTTCCAGGTTCTCATAACTTTATTAGTCTAGTTGTTGGCAAGATGATGAGACAATATGGATATCAAAAGAAAAAAATTTAGATATTATTTTGAAATGTTTTAGTATTTTTGTGCTCAGTTGTACTTTGA

mRNA sequence

AAGTAGATTTGTCGTTGTGTAAGGCACTTTTCAAAGCAGTGTCTTCTAAGCAATTTTTAGAAGTTATATTGTTGGATTGCCTGCAAGCAAGTTAACGTTACCCCGGTTGATTGCACATATAGCTTGTTATGGACCCCTATATTATGAAGCTTCTGGAAGATGACGAGGATGAAACAATGCATTCAGGTGCAGTTGTGGCGGCTTTTCAGGCTGCCTCGAATAGAGAGATAGAAGGTGATGTTCCGACCGTTTCCCAGACTAATGCATCAGATACAGCCTTCTCTGGTGGGAACAATGGTTCTTCTGGCCTCTTGCTACAAGCTTCTAGTCAAAATAAAAATACTGAATCTCATGTCCAACTAGATCAAAATTTTCGTTTGAAGCAAGAACAACATTCATCTCTGATGGAACCAGAGCGATGTACATCAGTACCTGAAAATCAGCAGCAACACAATGCTGCCCCCCTCCGAGCTTCAAAGAACCAACCCCATGCAGATCGTGAACAAGGGGAGGTAGAACAAGTTTCTGCTCAGTTTTCTCAAACAGAAGGACTGCAAGTTTCTGAACAAGTTCCAATCCTCATGAATAACTCAAACAGAATGCAGTACCCGGACAATGAATCTCAATACTTGAAGTTACAAAAAATGAGTAATCAGGAGGCAATGGTCTCGGAACAGGCAAATAACTCATTAAATCGTAGCAAACAGGTACCTTTTGCCTCGTTGATGCCTGTATTGATGCCTCAGCTTGATAAAGACAGAGGCATGCAACTTCAGAGTTTATTCAACAAATTGAAAAGGAATGAAATGAACAAAGATGATTTTGTCCGGTGCATCAGGAGTGTTGTGGGCAATCAGATGCTTAGATTAGCAGTTAGTCAAGTACAATCTCAGCCTCCACCTTCAGTAAGGCAACCTTCTCCTAGAATGCCATCTATGGGTGCCGGTGCACCAAATTTCTCTGATTCACGACCATTTGCACGACTTCATCAGAAAGGCATGAATTCTCCTGCAGTTCAATCGTACATACCTTCTTCAGCATCCCAAGGGCAGAGTAGTTCATGGTACCCTGCGATAGACAAGAATATAAAATCTTCACGAGAAGTCGAACAGCGACCTGATGGTGTAAATCAATGGACTTCATCTAGTTCAGGCACCATTCAGGAAAGGAAAGGCTCCTCAGTTCCTGTTTCAGGACTCGAGAAGCAGAAGCTACACTTACAACAGAAATCGTTTTCCATGTATGGAAACAGTGGTAATTACCACCCGTATACTGGGTCTAGCATAAATGCCTCTTCATTGTCTTCTAAACCCCAAACTCACGAGGGTCACGTGAAGCAAATTCCCCAGCAGGCTCCTAATCTTGGCAGGCAAGTTACCATAGATGATTCCAAGCGAGTGCAGGGTGGAAATGTTCCACACTTGCACAACAACTTAACTGCACAGCAAAATTCAGTTTCTTGGAAATCCTCAATAAGTAAAGAGCAGAATACAGGCCCTTTGTCATCGATGAGTTACATTAAACAACAATCTTCTGGTCAGGTTTCTGAGCAGAACAAACCCCAACTTTCAAATTTGCAGGGATTGTCTTCTGTTTCTAGCATGCAGGCTGAACACGTTAAAACAACCCCTGGAATTGGGAAGGACGCTCTTGAAAAACAAACTTCTAAAATGGGTTTTCCTATAAACAATGTTATGCCTCCAACATCTGCCAACGCGGAAAATTTAATTTCTTCTGATGCCAGTTCTCTAGATGACTCTAATGCTGTGTTAAGCTCTCAGGTGCCTTCTGCAGCTACTCCTGGAATGCAAGATAGGGCACCTCAAATAAAAGCAGTCGTTGGCCAGAAGAAGCCTCTTGAAACACTTGGCTCTTCACCACCCCTACCAAGTAAGAAGCAAAAACTATCTGGGGCATTTTCGGATCAAAGCATCGAACAACTTAACGATGTCACTGTAGTCAGTGGAGTTAATATTGAGGAAGAAGAAGAACAACTATTTTCTAGTGCAAAGGAAAATAGTCGAGCTTTTGAAGCATCACGAAAGGTTGTACAAGAAGAAGAGAGACTACTATTTCAGAAAGGCCCATTGCAGAAAAAGCTGGTGGAAATCATTGCTAAATGCGGTTTGAAGGGCATGAGCAATGAGGTTGAGAGATGTCTCTCATTGTGTGTGGAGGAAAGATTACGTGGGATTATTAGTAATCTAATCAGGCTGTCTAAGCAGCGAGTGGACGCCGAGAAACCAAGGCACCGAACACTTATTACTTCAAATGTTCGACAACAAATCGCGTTAGCTAACCAAAAGGCCAGAGAAGAATGGGAGAAGAAACGGGGTGAAGGAGAAGAACTCCGAAGGCTTAATGATTCTTTCCTCTATGAAAAAAATATTCCCTATAGCTTTGCAAAGCGAAGCTCGTTTGTCAAATATTTATGGGATGTGCCTGAGGATGGTCAGACGGTTGCTGTTGACACGGAGAAAGATGAAGGTCGAATGAAATCAGTTAAGGCAAACAAAGAGGACGATAAAATGCGGACAACAGCAGCAAATGTTGCTGCCCGTGCTGCTTTTGGAGGAGATGACATGCTATCAAAATGGCAACTTATGGCTGAGCAGGCACGACAGAAACGTGAAGGTAGAATGGATTCAGCCTCTGGTTCTCAGTCAGGGAATGATGCTGTCCGTAAGTTTTCATCAGCAGCAGGAAGATGTAGGAAGGACAACCAAAAAGGAACTAGCAGAAGCCTTGGTAGCACCCAAATCAATGAAACTCAAACTAGGGTGGCTCGTAGTATTTCTGTCAAAGATCTCATTGCTGTTCTACTAAGAGAACCCCAGATGTGTAGATCCACCACAATATATCTTGTACTTTGA

Coding sequence (CDS)

ATGGACCCCTATATTATGAAGCTTCTGGAAGATGACGAGGATGAAACAATGCATTCAGGTGCAGTTGTGGCGGCTTTTCAGGCTGCCTCGAATAGAGAGATAGAAGGTGATGTTCCGACCGTTTCCCAGACTAATGCATCAGATACAGCCTTCTCTGGTGGGAACAATGGTTCTTCTGGCCTCTTGCTACAAGCTTCTAGTCAAAATAAAAATACTGAATCTCATGTCCAACTAGATCAAAATTTTCGTTTGAAGCAAGAACAACATTCATCTCTGATGGAACCAGAGCGATGTACATCAGTACCTGAAAATCAGCAGCAACACAATGCTGCCCCCCTCCGAGCTTCAAAGAACCAACCCCATGCAGATCGTGAACAAGGGGAGGTAGAACAAGTTTCTGCTCAGTTTTCTCAAACAGAAGGACTGCAAGTTTCTGAACAAGTTCCAATCCTCATGAATAACTCAAACAGAATGCAGTACCCGGACAATGAATCTCAATACTTGAAGTTACAAAAAATGAGTAATCAGGAGGCAATGGTCTCGGAACAGGCAAATAACTCATTAAATCGTAGCAAACAGGTACCTTTTGCCTCGTTGATGCCTGTATTGATGCCTCAGCTTGATAAAGACAGAGGCATGCAACTTCAGAGTTTATTCAACAAATTGAAAAGGAATGAAATGAACAAAGATGATTTTGTCCGGTGCATCAGGAGTGTTGTGGGCAATCAGATGCTTAGATTAGCAGTTAGTCAAGTACAATCTCAGCCTCCACCTTCAGTAAGGCAACCTTCTCCTAGAATGCCATCTATGGGTGCCGGTGCACCAAATTTCTCTGATTCACGACCATTTGCACGACTTCATCAGAAAGGCATGAATTCTCCTGCAGTTCAATCGTACATACCTTCTTCAGCATCCCAAGGGCAGAGTAGTTCATGGTACCCTGCGATAGACAAGAATATAAAATCTTCACGAGAAGTCGAACAGCGACCTGATGGTGTAAATCAATGGACTTCATCTAGTTCAGGCACCATTCAGGAAAGGAAAGGCTCCTCAGTTCCTGTTTCAGGACTCGAGAAGCAGAAGCTACACTTACAACAGAAATCGTTTTCCATGTATGGAAACAGTGGTAATTACCACCCGTATACTGGGTCTAGCATAAATGCCTCTTCATTGTCTTCTAAACCCCAAACTCACGAGGGTCACGTGAAGCAAATTCCCCAGCAGGCTCCTAATCTTGGCAGGCAAGTTACCATAGATGATTCCAAGCGAGTGCAGGGTGGAAATGTTCCACACTTGCACAACAACTTAACTGCACAGCAAAATTCAGTTTCTTGGAAATCCTCAATAAGTAAAGAGCAGAATACAGGCCCTTTGTCATCGATGAGTTACATTAAACAACAATCTTCTGGTCAGGTTTCTGAGCAGAACAAACCCCAACTTTCAAATTTGCAGGGATTGTCTTCTGTTTCTAGCATGCAGGCTGAACACGTTAAAACAACCCCTGGAATTGGGAAGGACGCTCTTGAAAAACAAACTTCTAAAATGGGTTTTCCTATAAACAATGTTATGCCTCCAACATCTGCCAACGCGGAAAATTTAATTTCTTCTGATGCCAGTTCTCTAGATGACTCTAATGCTGTGTTAAGCTCTCAGGTGCCTTCTGCAGCTACTCCTGGAATGCAAGATAGGGCACCTCAAATAAAAGCAGTCGTTGGCCAGAAGAAGCCTCTTGAAACACTTGGCTCTTCACCACCCCTACCAAGTAAGAAGCAAAAACTATCTGGGGCATTTTCGGATCAAAGCATCGAACAACTTAACGATGTCACTGTAGTCAGTGGAGTTAATATTGAGGAAGAAGAAGAACAACTATTTTCTAGTGCAAAGGAAAATAGTCGAGCTTTTGAAGCATCACGAAAGGTTGTACAAGAAGAAGAGAGACTACTATTTCAGAAAGGCCCATTGCAGAAAAAGCTGGTGGAAATCATTGCTAAATGCGGTTTGAAGGGCATGAGCAATGAGGTTGAGAGATGTCTCTCATTGTGTGTGGAGGAAAGATTACGTGGGATTATTAGTAATCTAATCAGGCTGTCTAAGCAGCGAGTGGACGCCGAGAAACCAAGGCACCGAACACTTATTACTTCAAATGTTCGACAACAAATCGCGTTAGCTAACCAAAAGGCCAGAGAAGAATGGGAGAAGAAACGGGGTGAAGGAGAAGAACTCCGAAGGCTTAATGATTCTTTCCTCTATGAAAAAAATATTCCCTATAGCTTTGCAAAGCGAAGCTCGTTTGTCAAATATTTATGGGATGTGCCTGAGGATGGTCAGACGGTTGCTGTTGACACGGAGAAAGATGAAGGTCGAATGAAATCAGTTAAGGCAAACAAAGAGGACGATAAAATGCGGACAACAGCAGCAAATGTTGCTGCCCGTGCTGCTTTTGGAGGAGATGACATGCTATCAAAATGGCAACTTATGGCTGAGCAGGCACGACAGAAACGTGAAGGTAGAATGGATTCAGCCTCTGGTTCTCAGTCAGGGAATGATGCTGTCCGTAAGTTTTCATCAGCAGCAGGAAGATGTAGGAAGGACAACCAAAAAGGAACTAGCAGAAGCCTTGGTAGCACCCAAATCAATGAAACTCAAACTAGGGTGGCTCGTAGTATTTCTGTCAAAGATCTCATTGCTGTTCTACTAAGAGAACCCCAGATGTGTAGATCCACCACAATATATCTTGTACTTTGA

Protein sequence

MDPYIMKLLEDDEDETMHSGAVVAAFQAASNREIEGDVPTVSQTNASDTAFSGGNNGSSGLLLQASSQNKNTESHVQLDQNFRLKQEQHSSLMEPERCTSVPENQQQHNAAPLRASKNQPHADREQGEVEQVSAQFSQTEGLQVSEQVPILMNNSNRMQYPDNESQYLKLQKMSNQEAMVSEQANNSLNRSKQVPFASLMPVLMPQLDKDRGMQLQSLFNKLKRNEMNKDDFVRCIRSVVGNQMLRLAVSQVQSQPPPSVRQPSPRMPSMGAGAPNFSDSRPFARLHQKGMNSPAVQSYIPSSASQGQSSSWYPAIDKNIKSSREVEQRPDGVNQWTSSSSGTIQERKGSSVPVSGLEKQKLHLQQKSFSMYGNSGNYHPYTGSSINASSLSSKPQTHEGHVKQIPQQAPNLGRQVTIDDSKRVQGGNVPHLHNNLTAQQNSVSWKSSISKEQNTGPLSSMSYIKQQSSGQVSEQNKPQLSNLQGLSSVSSMQAEHVKTTPGIGKDALEKQTSKMGFPINNVMPPTSANAENLISSDASSLDDSNAVLSSQVPSAATPGMQDRAPQIKAVVGQKKPLETLGSSPPLPSKKQKLSGAFSDQSIEQLNDVTVVSGVNIEEEEEQLFSSAKENSRAFEASRKVVQEEERLLFQKGPLQKKLVEIIAKCGLKGMSNEVERCLSLCVEERLRGIISNLIRLSKQRVDAEKPRHRTLITSNVRQQIALANQKAREEWEKKRGEGEELRRLNDSFLYEKNIPYSFAKRSSFVKYLWDVPEDGQTVAVDTEKDEGRMKSVKANKEDDKMRTTAANVAARAAFGGDDMLSKWQLMAEQARQKREGRMDSASGSQSGNDAVRKFSSAAGRCRKDNQKGTSRSLGSTQINETQTRVARSISVKDLIAVLLREPQMCRSTTIYLVL

Homology

[Close]

BLAST of CmaCh12G008850 vs. ExPASy Swiss-Prot
Match: F4K4L7 (Transcription initiation factor TFIID subunit 4b OS=Arabidopsis thaliana OX=3702 GN=TAF4B PE=1 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.4e-141
Identity = 404/989 (40.85%), Postives = 532/989 (53.79%), Query Frame = 0


Query: 1   MDPYIMKLLEDDEDETMHSGAVVAAFQAASNREIEGDVPTVSQTNASDTAFSGGNNGSSG 60
           MDP I KLLE+DEDE+MHSGA V AFQAA NR+IEG     S T +     + GNN S  
Sbjct: 1   MDPSIFKLLEEDEDESMHSGADVDAFQAALNRDIEG-----SMTTSIPHVTNPGNNHS-- 60

Query: 61  LLLQASSQNKNTESHVQLDQNFRLKQEQHS--SLMEPERCTSVPENQQQHN---AAPLRA 120
                S Q  +T  +   D N  + Q QHS  S    E+  S  ENQ QH+   A     
Sbjct: 61  -----SRQQFSTWKNGIGDSNINV-QTQHSLESTQMKEQEGSTLENQHQHDLKRANEPHL 120

Query: 121 SKNQPHADREQGEVEQVSAQFSQTEGLQVSEQVPILMNNSNRMQYPDNESQYLKLQKMSN 180
             NQP      G++ +  +Q  Q+ GL +SE+ P   N S+R    ++ESQY+KLQKMS+
Sbjct: 121 QHNQPQDLHRAGQLWENPSQVPQSTGLPISEKNP-TGNESDRSHNQESESQYMKLQKMSS 180

Query: 181 QEAMVSEQANNSLN------RSKQVPFASLMPVLMPQLDKDRGMQLQSLFNKLKRNEMNK 240
           Q+A   E   N +N        KQVPFA+L+P LM QLDKDR +QL++L+ +LK+NE+ K
Sbjct: 181 QQARGVEPPVNPMNVNPINRNPKQVPFAALLPTLMNQLDKDRALQLRTLYARLKKNEIPK 240

Query: 241 DDFVRCIRSVVGNQMLRLAVSQVQSQPPPSVRQPSPRMPSMGAGAPNFSDSRPFARLHQK 300
           + F R ++ +VG+QMLR+AVS++Q                                  Q 
Sbjct: 241 EGFTRHMKDIVGDQMLRMAVSKLQ----------------------------------QV 300

Query: 301 GMNSPAVQSYIPSSASQGQSSSWYPAIDKNIKSSREVEQRPDGVNQWTSSSSGTIQERKG 360
             N   +    PS+    Q S              + + R   +NQ  SS+SGT+    G
Sbjct: 301 NYNQGKIGIQAPSTEINNQKS--------------QSDPRAVHLNQLPSSASGTL----G 360

Query: 361 SSVPVSGLEKQKLHLQQ---KSFSMYGNSGNYHPYTGSSINASSLSSKPQTHEGHVKQI- 420
           SSVPV GL K   H  Q    SF MY  SG++H + G + NAS  + +P  H+ H++ + 
Sbjct: 361 SSVPVQGLTKHPQHQMQHPPSSFPMYTTSGSFHSFPGPNTNASGSTLRPHLHDSHMRHVA 420

Query: 421 -------------PQQA------PNLGRQVTIDDSKRVQGGNVPHLHNNLTAQQNSVSWK 480
                        PQ        P   R  +++D  RVQGG   H  N+           
Sbjct: 421 HNQPMGSTGLGGPPQSTTNMMTMPKFERPSSVNDPSRVQGGATSHFQNS----------- 480

Query: 481 SSISKEQNTGPLSSMSYIKQQSSGQVSEQNKPQLSNLQGLSSVSSMQAEHVKTTPGIGKD 540
           SS+      G  SS+S++KQ+S  Q  E+N           + +SM +           +
Sbjct: 481 SSLPLNSAPGQGSSVSHVKQESVDQSFEKN-----------NAASMTS----------NE 540

Query: 541 ALEKQTSKMGFPINNVMPPTSANAENLISSDASSLDDSNAVLSSQVP-SAATPGMQDRAP 600
            LEK++S+M     N M P S+     +S   ++  D++  ++S+ P   +  G   R P
Sbjct: 541 DLEKESSRMVLSTPNNMAPASS-----VSPSMTTQLDASTTMNSRGPLGTSQGGANARMP 600

Query: 601 QIKAVVGQKKPLETLGSSPPLPSKKQKLSGAFSDQSIEQLNDVTVVSGVNIEEEEEQLFS 660
             K  VGQKKPLETLGSSPP PSKKQK++G   DQSIEQLNDVT VSGVN+ EEEEQLFS
Sbjct: 601 PKKPSVGQKKPLETLGSSPPPPSKKQKVAGNSMDQSIEQLNDVTAVSGVNLREEEEQLFS 660

Query: 661 SAKENSRAFEASRKVV-QEEERLLFQKGPLQKKLVEIIAKCGLKGMSNEVERCLSLCVEE 720
            AKE+ R  EASR+VV +EEERL+ QK PLQ+KL EI+AK GLK +SN+VERCLSLCVEE
Sbjct: 661 GAKEDGRVSEASRRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDVERCLSLCVEE 720

Query: 721 RLRGIISNLIRLSKQRVDAEKPRHRTLITSNVRQQIALANQKAREEWEKKRGEGEELRRL 780
           R+RG++S++IRLSKQRVDAEK RHRT ITS++R QI   NQK +EEWEKK+ E E+L++ 
Sbjct: 721 RMRGLLSHIIRLSKQRVDAEKSRHRTFITSDIRLQINEMNQKVKEEWEKKQAEAEKLKKP 780

Query: 781 NDSFLYEKNIPYSFAKRSSFVKYLWDVPEDGQTVAVDTEKD--EGRMKSVKANKE-DDKM 840
           ++S                         E+G    VD+EKD  + R K VK NKE DDKM
Sbjct: 781 SES-------------------------EEGDG-GVDSEKDKEDNRSKGVKGNKEDDDKM 840

Query: 841 RTTAANVAARAAFGGDDMLSKWQLMAEQARQKREGRMDSASGSQSGNDAVRKFSSAAGRC 900
           RTTAANVAARAA GGDD   KWQLMAE ARQK        S S++G D  +K +S  G+ 
Sbjct: 841 RTTAANVAARAAVGGDDAFLKWQLMAE-ARQK--------SVSEAGKDGNQKTTSGGGKN 851

Query: 901 RKDNQKG------------------------------------TSRSLGSTQINETQTRV 915
            KD Q G                                      R +G  Q +  Q +V
Sbjct: 901 SKDRQDGGRRFSGTESSCGVGIVYRVSSSRFWFAMMSFGFLFAGGRRVGKNQGSSLQPKV 851

[Close]

BLAST of CmaCh12G008850 vs. ExPASy Swiss-Prot
Match: Q6SJR1 (Transcription initiation factor TFIID subunit 4 OS=Arabidopsis thaliana OX=3702 GN=TAF4 PE=1 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.8e-86
Identity = 284/795 (35.72%), Postives = 405/795 (50.94%), Query Frame = 0


Query: 152 MNNSNRMQYPDNESQYLKLQKMSNQEAMVSEQANNSLNRSKQVPFASLMPVLMPQLDKDR 211
           +NN+   +    + +Y+KLQKMS++E    E+  + +N + ++  A +  +L   +D   
Sbjct: 43  INNTTGNESEKPQPRYMKLQKMSSKETPWVEKTVDPVNHNLRL--ARVTDLLRTVVDHQP 102

Query: 212 GMQLQ--SLFNKLKRNEMNKDDFVRCIRSVVGNQMLRLAVSQVQSQPPPSVRQPSPRMPS 271
           G +    +L  KLKR E+  ++F+R +R +VG+Q++R  +SQ+          P  +  +
Sbjct: 103 GKKTHCLNLHYKLKRKELTMEEFMRQLRDLVGDQIIRSVISQL----------PQLKPGN 162

Query: 272 MGAGAPNFSDSRPFARLHQKGMNSPAVQSYIPSSASQGQSSSWYPAIDKNIKSSREVEQR 331
           MG   P  S+       H K   S                            +++E + R
Sbjct: 163 MGIKVPGRSN-------HDKVSKSAEF-------------------------TAQESDPR 222

Query: 332 PDGVNQWTSSSSGTIQERKGSSVPVSGLEK---QKLHLQQKSFSMYGNSGNYHPYTGSSI 391
              VNQ +S++SGT+     SS  V GL K   Q + L   SF M   SG+ +PY G+++
Sbjct: 223 EVHVNQLSSTTSGTL----NSSTTVQGLNKHPEQHMQLPSSSFHMDTKSGSLNPYPGTNV 282

Query: 392 NASSLSSKPQTHEGHVKQIPQQ------------------APNLGRQVTIDDSKRVQGGN 451
            +   SS+ +  +   ++  Q                    P   R   ++   RVQ G 
Sbjct: 283 TSPGSSSRAKLPDFQHRENNQNVGIASVGGPTKSTINMTTVPKFERPTFVNGPSRVQDGP 342

Query: 452 VPHLHNNLTAQQNSVSWKSSISKEQNTGPLSSMSYIKQQSSGQVSEQ-NKPQLSNLQGLS 511
           +     N +    S  W+ S++K+   GP SS+ +++ +   Q  EQ +KP+    QG++
Sbjct: 343 ISDFPKNSSFPLYSAPWQGSVTKDHTVGPSSSVIHVEHKLIDQSFEQAHKPRYLVQQGVT 402

Query: 512 SVSSMQAEHVKTTPGIGKDALEKQTSKMGFPINNVMPPTSANAENLISSDASSLDDSNAV 571
           +V   Q   +   P    D LEKQ+SKMG      +  ++ +A ++  S  + LD S  V
Sbjct: 403 NVPLKQKNAI---PISSNDDLEKQSSKMG------LFTSTTSASSVFPSMTTQLDSSTMV 462

Query: 572 ----LSSQVPSAATPGMQDRAPQIKAVVGQKKPLETLGSSPPLPSKKQKLSGAFSDQSIE 631
                S  +P  A   +  + P     VGQKKPLE LGSS P   KKQK+ G  SD+SIE
Sbjct: 463 NMPAPSETIPKIANVTVTPKMPS----VGQKKPLEALGSSLPPSRKKQKICGTSSDESIE 522

Query: 632 QLNDVTVVSGVNIEEEEEQLFSSA-KENSRAFEASRKVVQ-EEERLLFQKGPLQKKLVEI 691
           + NDVT VSG+N+ EEE+QL  S  K+N R  +A R++V  EEER L QK PLQ+KL EI
Sbjct: 523 KFNDVTAVSGINLREEEKQLLDSGPKKNDRVSKAYRRLVHGEEERTLLQKIPLQRKLTEI 582

Query: 692 IAKCGLKGMSNEVERCLSLCVEERLRGIISNLIRLSKQRVDAEKPRHRTLITSNVRQQIA 751
           + K GLK + ++VERCLSLCVEER+RG++ N+IR+SKQR DAEK R+RT ITS++R++I 
Sbjct: 583 MGKSGLKHIDHDVERCLSLCVEERMRGLLFNIIRISKQRTDAEKCRNRTFITSDIRKEIN 642

Query: 752 LANQKAREEWEKKRGEGEELRRLNDSFLYEKNIPYSFAKRSSFVKYLWDVPEDGQTVAVD 811
             NQK +EEWEKK   GEE  + N                                   D
Sbjct: 643 EMNQKVKEEWEKKH-SGEEKNKEN-----------------------------------D 702

Query: 812 TEKDEGRMKSVKANKED-DKMRTTAANVAARAAFGGDDMLSKWQLMAEQARQKREGRMDS 871
           TEK++ R   VKANK+D DK R  AANVA RAA GGDD  SKW+LMAE ARQ+       
Sbjct: 703 TEKEDQRSNEVKANKKDEDKERAKAANVAVRAAVGGDDRFSKWKLMAE-ARQRS------ 712

Query: 872 ASGSQSGNDAVRKFSSAAGRCRKDNQKGTSRSLGSTQINETQ--TRVARSISVKDLIAVL 914
                         S   GR    N K  S   G TQ  + Q   +V RSISVKD+IAV+
Sbjct: 763 --------------SPGPGR----NSKKLS---GGTQFGKNQGLPKVVRSISVKDVIAVV 712

[Close]

BLAST of CmaCh12G008850 vs. ExPASy Swiss-Prot
Match: Q92750 (Transcription initiation factor TFIID subunit 4B OS=Homo sapiens OX=9606 GN=TAF4B PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 9.3e-05
Identity = 45/167 (26.95%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 579 TLGSSPPLPSK-KQKLSGAFSDQSIEQLNDVTVVSGVNIEEEEEQLFSSAKENSRAFEAS 638
           +L +SP   ++ K+ ++  F D+  + +NDVT ++GVN+ EE   + ++  E       S
Sbjct: 591 SLQASPTQKNRIKENVTSCFRDE--DDINDVTSMAGVNLNEENACILATNSELVGTLIQS 650

Query: 639 RKVVQEEERLLFQKGPLQKKLVEIIAKCGLKGMSNEVERCLSLCVEERLRGIISNLIRLS 698
            K    +E  LF  G LQK++++I  K  +  ++++    +S   +ERLRG++  L  ++
Sbjct: 651 CK----DEPFLF-IGALQKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLTAIA 710

Query: 699 KQRVDAEKPRHRTLITSNVRQQIALANQKAREEWEKKRGEGEELRRL 745
           + R+   K     ++ S+ R Q+    +   ++ EK+R + EE   L
Sbjct: 711 QHRMTTYKASENYILCSDTRSQLKFLEK--LDQLEKQRKDLEEREML 748

[Close]

BLAST of CmaCh12G008850 vs. TAIR 10
Match: AT5G43130.1 (TBP-associated factor 4 )

HSP 1 Score: 515.8 bits (1327), Expect = 7.2e-146
Identity = 404/960 (42.08%), Postives = 532/960 (55.42%), Query Frame = 0


Query: 1   MDPYIMKLLEDDEDETMHSGAVVAAFQAASNREIEGDVPTVSQTNASDTAFSGGNNGSSG 60
           MDP I KLLE+DEDE+MHSGA V AFQAA NR+IEG     S T +     + GNN S  
Sbjct: 1   MDPSIFKLLEEDEDESMHSGADVDAFQAALNRDIEG-----SMTTSIPHVTNPGNNHS-- 60

Query: 61  LLLQASSQNKNTESHVQLDQNFRLKQEQHS--SLMEPERCTSVPENQQQHN---AAPLRA 120
                S Q  +T  +   D N  + Q QHS  S    E+  S  ENQ QH+   A     
Sbjct: 61  -----SRQQFSTWKNGIGDSNINV-QTQHSLESTQMKEQEGSTLENQHQHDLKRANEPHL 120

Query: 121 SKNQPHADREQGEVEQVSAQFSQTEGLQVSEQVPILMNNSNRMQYPDNESQYLKLQKMSN 180
             NQP      G++ +  +Q  Q+ GL +SE+ P   N S+R    ++ESQY+KLQKMS+
Sbjct: 121 QHNQPQDLHRAGQLWENPSQVPQSTGLPISEKNP-TGNESDRSHNQESESQYMKLQKMSS 180

Query: 181 QEAMVSEQANNSLN------RSKQVPFASLMPVLMPQLDKDRGMQLQSLFNKLKRNEMNK 240
           Q+A   E   N +N        KQVPFA+L+P LM QLDKDR +QL++L+ +LK+NE+ K
Sbjct: 181 QQARGVEPPVNPMNVNPINRNPKQVPFAALLPTLMNQLDKDRALQLRTLYARLKKNEIPK 240

Query: 241 DDFVRCIRSVVGNQMLRLAVSQVQSQPPPSVRQPSPRMPSMGAGAPNFSDSRPFARLHQK 300
           + F R ++ +VG+QMLR+AVS++Q                                  Q 
Sbjct: 241 EGFTRHMKDIVGDQMLRMAVSKLQ----------------------------------QV 300

Query: 301 GMNSPAVQSYIPSSASQGQSSSWYPAIDKNIKSSREVEQRPDGVNQWTSSSSGTIQERKG 360
             N   +    PS+    Q S              + + R   +NQ  SS+SGT+    G
Sbjct: 301 NYNQGKIGIQAPSTEINNQKS--------------QSDPRAVHLNQLPSSASGTL----G 360

Query: 361 SSVPVSGLEKQKLHLQQ---KSFSMYGNSGNYHPYTGSSINASSLSSKPQTHEGHVKQI- 420
           SSVPV GL K   H  Q    SF MY  SG++H + G + NAS  + +P  H+ H++ + 
Sbjct: 361 SSVPVQGLTKHPQHQMQHPPSSFPMYTTSGSFHSFPGPNTNASGSTLRPHLHDSHMRHVA 420

Query: 421 -------------PQQA------PNLGRQVTIDDSKRVQGGNVPHLHNNLTAQQNSVSWK 480
                        PQ        P   R  +++D  RVQGG   H  N+           
Sbjct: 421 HNQPMGSTGLGGPPQSTTNMMTMPKFERPSSVNDPSRVQGGATSHFQNS----------- 480

Query: 481 SSISKEQNTGPLSSMSYIKQQSSGQVSEQNKPQLSNLQGLSSVSSMQAEHVKTTPGIGKD 540
           SS+      G  SS+S++KQ+S  Q  E+N           + +SM +           +
Sbjct: 481 SSLPLNSAPGQGSSVSHVKQESVDQSFEKN-----------NAASMTS----------NE 540

Query: 541 ALEKQTSKMGFPINNVMPPTSANAENLISSDASSLDDSNAVLSSQVP-SAATPGMQDRAP 600
            LEK++S+M     N M P S+     +S   ++  D++  ++S+ P   +  G   R P
Sbjct: 541 DLEKESSRMVLSTPNNMAPASS-----VSPSMTTQLDASTTMNSRGPLGTSQGGANARMP 600

Query: 601 QIKAVVGQKKPLETLGSSPPLPSKKQKLSGAFSDQSIEQLNDVTVVSGVNIEEEEEQLFS 660
             K  VGQKKPLETLGSSPP PSKKQK++G   DQSIEQLNDVT VSGVN+ EEEEQLFS
Sbjct: 601 PKKPSVGQKKPLETLGSSPPPPSKKQKVAGNSMDQSIEQLNDVTAVSGVNLREEEEQLFS 660

Query: 661 SAKENSRAFEASRKVV-QEEERLLFQKGPLQKKLVEIIAKCGLKGMSNEVERCLSLCVEE 720
            AKE+ R  EASR+VV +EEERL+ QK PLQ+KL EI+AK GLK +SN+VERCLSLCVEE
Sbjct: 661 GAKEDGRVSEASRRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDVERCLSLCVEE 720

Query: 721 RLRGIISNLIRLSKQRVDAEKPRHRTLITSNVRQQIALANQKAREEWEKKRGEGEELRRL 780
           R+RG++S++IRLSKQRVDAEK RHRT ITS++R QI   NQK +EEWEKK+ E E+L++ 
Sbjct: 721 RMRGLLSHIIRLSKQRVDAEKSRHRTFITSDIRLQINEMNQKVKEEWEKKQAEAEKLKKP 780

Query: 781 NDSFLYEKNIPYSFAKRSSFVKYLWDVPEDGQTVAVDTEKD--EGRMKSVKANKE-DDKM 840
           ++S                         E+G    VD+EKD  + R K VK NKE DDKM
Sbjct: 781 SES-------------------------EEGDG-GVDSEKDKEDNRSKGVKGNKEDDDKM 822

Query: 841 RTTAANVAARAAFGGDDMLSKWQLMAEQARQKREGRMDSASGSQSGNDAVRKFSSAAGRC 900
           RTTAANVAARAA GGDD   KWQLMAE ARQK        S S++G D  +K +S  G+ 
Sbjct: 841 RTTAANVAARAAVGGDDAFLKWQLMAE-ARQK--------SVSEAGKDGNQKTTSGGGKN 822

Query: 901 RKDNQKG-------TSRSLGSTQINETQTRVARSISVKDLIAVLLREPQMCRSTTIYLVL 915
            KD Q G         R +G  Q +  Q +V R+ISVKD++AVL REPQM +ST +Y ++
Sbjct: 901 SKDRQDGGRRFSGTGGRRVGKNQGSSLQPKVVRTISVKDVVAVLEREPQMSKSTLMYRLI 822

[Close]

BLAST of CmaCh12G008850 vs. TAIR 10
Match: AT5G43130.2 (TBP-associated factor 4 )

HSP 1 Score: 504.6 bits (1298), Expect = 1.7e-142
Identity = 404/989 (40.85%), Postives = 532/989 (53.79%), Query Frame = 0


Query: 1   MDPYIMKLLEDDEDETMHSGAVVAAFQAASNREIEGDVPTVSQTNASDTAFSGGNNGSSG 60
           MDP I KLLE+DEDE+MHSGA V AFQAA NR+IEG     S T +     + GNN S  
Sbjct: 1   MDPSIFKLLEEDEDESMHSGADVDAFQAALNRDIEG-----SMTTSIPHVTNPGNNHS-- 60

Query: 61  LLLQASSQNKNTESHVQLDQNFRLKQEQHS--SLMEPERCTSVPENQQQHN---AAPLRA 120
                S Q  +T  +   D N  + Q QHS  S    E+  S  ENQ QH+   A     
Sbjct: 61  -----SRQQFSTWKNGIGDSNINV-QTQHSLESTQMKEQEGSTLENQHQHDLKRANEPHL 120

Query: 121 SKNQPHADREQGEVEQVSAQFSQTEGLQVSEQVPILMNNSNRMQYPDNESQYLKLQKMSN 180
             NQP      G++ +  +Q  Q+ GL +SE+ P   N S+R    ++ESQY+KLQKMS+
Sbjct: 121 QHNQPQDLHRAGQLWENPSQVPQSTGLPISEKNP-TGNESDRSHNQESESQYMKLQKMSS 180

Query: 181 QEAMVSEQANNSLN------RSKQVPFASLMPVLMPQLDKDRGMQLQSLFNKLKRNEMNK 240
           Q+A   E   N +N        KQVPFA+L+P LM QLDKDR +QL++L+ +LK+NE+ K
Sbjct: 181 QQARGVEPPVNPMNVNPINRNPKQVPFAALLPTLMNQLDKDRALQLRTLYARLKKNEIPK 240

Query: 241 DDFVRCIRSVVGNQMLRLAVSQVQSQPPPSVRQPSPRMPSMGAGAPNFSDSRPFARLHQK 300
           + F R ++ +VG+QMLR+AVS++Q                                  Q 
Sbjct: 241 EGFTRHMKDIVGDQMLRMAVSKLQ----------------------------------QV 300

Query: 301 GMNSPAVQSYIPSSASQGQSSSWYPAIDKNIKSSREVEQRPDGVNQWTSSSSGTIQERKG 360
             N   +    PS+    Q S              + + R   +NQ  SS+SGT+    G
Sbjct: 301 NYNQGKIGIQAPSTEINNQKS--------------QSDPRAVHLNQLPSSASGTL----G 360

Query: 361 SSVPVSGLEKQKLHLQQ---KSFSMYGNSGNYHPYTGSSINASSLSSKPQTHEGHVKQI- 420
           SSVPV GL K   H  Q    SF MY  SG++H + G + NAS  + +P  H+ H++ + 
Sbjct: 361 SSVPVQGLTKHPQHQMQHPPSSFPMYTTSGSFHSFPGPNTNASGSTLRPHLHDSHMRHVA 420

Query: 421 -------------PQQA------PNLGRQVTIDDSKRVQGGNVPHLHNNLTAQQNSVSWK 480
                        PQ        P   R  +++D  RVQGG   H  N+           
Sbjct: 421 HNQPMGSTGLGGPPQSTTNMMTMPKFERPSSVNDPSRVQGGATSHFQNS----------- 480

Query: 481 SSISKEQNTGPLSSMSYIKQQSSGQVSEQNKPQLSNLQGLSSVSSMQAEHVKTTPGIGKD 540
           SS+      G  SS+S++KQ+S  Q  E+N           + +SM +           +
Sbjct: 481 SSLPLNSAPGQGSSVSHVKQESVDQSFEKN-----------NAASMTS----------NE 540

Query: 541 ALEKQTSKMGFPINNVMPPTSANAENLISSDASSLDDSNAVLSSQVP-SAATPGMQDRAP 600
            LEK++S+M     N M P S+     +S   ++  D++  ++S+ P   +  G   R P
Sbjct: 541 DLEKESSRMVLSTPNNMAPASS-----VSPSMTTQLDASTTMNSRGPLGTSQGGANARMP 600

Query: 601 QIKAVVGQKKPLETLGSSPPLPSKKQKLSGAFSDQSIEQLNDVTVVSGVNIEEEEEQLFS 660
             K  VGQKKPLETLGSSPP PSKKQK++G   DQSIEQLNDVT VSGVN+ EEEEQLFS
Sbjct: 601 PKKPSVGQKKPLETLGSSPPPPSKKQKVAGNSMDQSIEQLNDVTAVSGVNLREEEEQLFS 660

Query: 661 SAKENSRAFEASRKVV-QEEERLLFQKGPLQKKLVEIIAKCGLKGMSNEVERCLSLCVEE 720
            AKE+ R  EASR+VV +EEERL+ QK PLQ+KL EI+AK GLK +SN+VERCLSLCVEE
Sbjct: 661 GAKEDGRVSEASRRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDVERCLSLCVEE 720

Query: 721 RLRGIISNLIRLSKQRVDAEKPRHRTLITSNVRQQIALANQKAREEWEKKRGEGEELRRL 780
           R+RG++S++IRLSKQRVDAEK RHRT ITS++R QI   NQK +EEWEKK+ E E+L++ 
Sbjct: 721 RMRGLLSHIIRLSKQRVDAEKSRHRTFITSDIRLQINEMNQKVKEEWEKKQAEAEKLKKP 780

Query: 781 NDSFLYEKNIPYSFAKRSSFVKYLWDVPEDGQTVAVDTEKD--EGRMKSVKANKE-DDKM 840
           ++S                         E+G    VD+EKD  + R K VK NKE DDKM
Sbjct: 781 SES-------------------------EEGDG-GVDSEKDKEDNRSKGVKGNKEDDDKM 840

Query: 841 RTTAANVAARAAFGGDDMLSKWQLMAEQARQKREGRMDSASGSQSGNDAVRKFSSAAGRC 900
           RTTAANVAARAA GGDD   KWQLMAE ARQK        S S++G D  +K +S  G+ 
Sbjct: 841 RTTAANVAARAAVGGDDAFLKWQLMAE-ARQK--------SVSEAGKDGNQKTTSGGGKN 851

Query: 901 RKDNQKG------------------------------------TSRSLGSTQINETQTRV 915
            KD Q G                                      R +G  Q +  Q +V
Sbjct: 901 SKDRQDGGRRFSGTESSCGVGIVYRVSSSRFWFAMMSFGFLFAGGRRVGKNQGSSLQPKV 851

[Close]

BLAST of CmaCh12G008850 vs. TAIR 10
Match: AT1G27720.1 (TBP-associated factor 4B )

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-87
Identity = 284/795 (35.72%), Postives = 405/795 (50.94%), Query Frame = 0


Query: 152 MNNSNRMQYPDNESQYLKLQKMSNQEAMVSEQANNSLNRSKQVPFASLMPVLMPQLDKDR 211
           +NN+   +    + +Y+KLQKMS++E    E+  + +N + ++  A +  +L   +D   
Sbjct: 43  INNTTGNESEKPQPRYMKLQKMSSKETPWVEKTVDPVNHNLRL--ARVTDLLRTVVDHQP 102

Query: 212 GMQLQ--SLFNKLKRNEMNKDDFVRCIRSVVGNQMLRLAVSQVQSQPPPSVRQPSPRMPS 271
           G +    +L  KLKR E+  ++F+R +R +VG+Q++R  +SQ+          P  +  +
Sbjct: 103 GKKTHCLNLHYKLKRKELTMEEFMRQLRDLVGDQIIRSVISQL----------PQLKPGN 162

Query: 272 MGAGAPNFSDSRPFARLHQKGMNSPAVQSYIPSSASQGQSSSWYPAIDKNIKSSREVEQR 331
           MG   P  S+       H K   S                            +++E + R
Sbjct: 163 MGIKVPGRSN-------HDKVSKSAEF-------------------------TAQESDPR 222

Query: 332 PDGVNQWTSSSSGTIQERKGSSVPVSGLEK---QKLHLQQKSFSMYGNSGNYHPYTGSSI 391
              VNQ +S++SGT+     SS  V GL K   Q + L   SF M   SG+ +PY G+++
Sbjct: 223 EVHVNQLSSTTSGTL----NSSTTVQGLNKHPEQHMQLPSSSFHMDTKSGSLNPYPGTNV 282

Query: 392 NASSLSSKPQTHEGHVKQIPQQ------------------APNLGRQVTIDDSKRVQGGN 451
            +   SS+ +  +   ++  Q                    P   R   ++   RVQ G 
Sbjct: 283 TSPGSSSRAKLPDFQHRENNQNVGIASVGGPTKSTINMTTVPKFERPTFVNGPSRVQDGP 342

Query: 452 VPHLHNNLTAQQNSVSWKSSISKEQNTGPLSSMSYIKQQSSGQVSEQ-NKPQLSNLQGLS 511
           +     N +    S  W+ S++K+   GP SS+ +++ +   Q  EQ +KP+    QG++
Sbjct: 343 ISDFPKNSSFPLYSAPWQGSVTKDHTVGPSSSVIHVEHKLIDQSFEQAHKPRYLVQQGVT 402

Query: 512 SVSSMQAEHVKTTPGIGKDALEKQTSKMGFPINNVMPPTSANAENLISSDASSLDDSNAV 571
           +V   Q   +   P    D LEKQ+SKMG      +  ++ +A ++  S  + LD S  V
Sbjct: 403 NVPLKQKNAI---PISSNDDLEKQSSKMG------LFTSTTSASSVFPSMTTQLDSSTMV 462

Query: 572 ----LSSQVPSAATPGMQDRAPQIKAVVGQKKPLETLGSSPPLPSKKQKLSGAFSDQSIE 631
                S  +P  A   +  + P     VGQKKPLE LGSS P   KKQK+ G  SD+SIE
Sbjct: 463 NMPAPSETIPKIANVTVTPKMPS----VGQKKPLEALGSSLPPSRKKQKICGTSSDESIE 522

Query: 632 QLNDVTVVSGVNIEEEEEQLFSSA-KENSRAFEASRKVVQ-EEERLLFQKGPLQKKLVEI 691
           + NDVT VSG+N+ EEE+QL  S  K+N R  +A R++V  EEER L QK PLQ+KL EI
Sbjct: 523 KFNDVTAVSGINLREEEKQLLDSGPKKNDRVSKAYRRLVHGEEERTLLQKIPLQRKLTEI 582

Query: 692 IAKCGLKGMSNEVERCLSLCVEERLRGIISNLIRLSKQRVDAEKPRHRTLITSNVRQQIA 751
           + K GLK + ++VERCLSLCVEER+RG++ N+IR+SKQR DAEK R+RT ITS++R++I 
Sbjct: 583 MGKSGLKHIDHDVERCLSLCVEERMRGLLFNIIRISKQRTDAEKCRNRTFITSDIRKEIN 642

Query: 752 LANQKAREEWEKKRGEGEELRRLNDSFLYEKNIPYSFAKRSSFVKYLWDVPEDGQTVAVD 811
             NQK +EEWEKK   GEE  + N                                   D
Sbjct: 643 EMNQKVKEEWEKKH-SGEEKNKEN-----------------------------------D 702

Query: 812 TEKDEGRMKSVKANKED-DKMRTTAANVAARAAFGGDDMLSKWQLMAEQARQKREGRMDS 871
           TEK++ R   VKANK+D DK R  AANVA RAA GGDD  SKW+LMAE ARQ+       
Sbjct: 703 TEKEDQRSNEVKANKKDEDKERAKAANVAVRAAVGGDDRFSKWKLMAE-ARQRS------ 712

Query: 872 ASGSQSGNDAVRKFSSAAGRCRKDNQKGTSRSLGSTQINETQ--TRVARSISVKDLIAVL 914
                         S   GR    N K  S   G TQ  + Q   +V RSISVKD+IAV+
Sbjct: 763 --------------SPGPGR----NSKKLS---GGTQFGKNQGLPKVVRSISVKDVIAVV 712

The following BLAST results are available for this feature:

BLAST of CmaCh12G008850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4K4L7	2.4e-141	40.85	Transcription initiation factor TFIID subunit 4b OS=Arabidopsis thaliana OX=3702...	[more]
Q6SJR1	2.8e-86	35.72	Transcription initiation factor TFIID subunit 4 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q92750	9.3e-05	26.95	Transcription initiation factor TFIID subunit 4B OS=Homo sapiens OX=9606 GN=TAF4...	[more]

BLAST of CmaCh12G008850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43130.1	7.2e-146	42.08	TBP-associated factor 4	[more]
AT5G43130.2	1.7e-142	40.85	TBP-associated factor 4	[more]
AT1G27720.1	2.0e-87	35.72	TBP-associated factor 4B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007900	Transcription initiation factor TFIID component TAF4, C-terminal	PFAM	PF05236	TAF4	coord: 605..911 e-value: 1.2E-64 score: 218.7
IPR007900	Transcription initiation factor TFIID component TAF4, C-terminal	CDD	cd08045	TAF4	coord: 600..911 e-value: 3.21761E-39 score: 142.853
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 649..694 e-value: 1.1E-7 score: 33.5
IPR022003	RST domain	PFAM	PF12174	RST	coord: 190..253 e-value: 1.8E-17 score: 63.0
IPR022003	RST domain	PROSITE	PS51879	RST	coord: 187..258 score: 29.542522
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 828..882
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 868..882
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 383..405
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 576..595
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 329..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..357
None	No IPR available	PANTHER	PTHR15138:SF14	IP01149P-RELATED	coord: 43..911
IPR045144	Transcription initiation factor TFIID component TAF4	PANTHER	PTHR15138	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4	coord: 43..911

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008850.1	CmaCh12G008850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003743	translation initiation factor activity