Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATTGTTCTTCCTCTTCTTGTAGAAAACTTTCTTCCTCCTTTTAAATATTTCCCTTAGATTTTATTTTTCTTTGTTTTTTCATTCAGATTTTCGTGAAAGGCCAGCGTTCCAGGTTTGTTTAATCTCTCCTCGTTTTTTCCGATTCATGAATTTCATGTATTTCACTTTTTGATTGGAATCGTTACGATCTATTGTAATTTCGTTTGATCCATCACCTAGATTGAAATTAGGTCTCTGTGATTTACACATCATCGGTCGTGGTGTTTTTTATTTTCTTTCGAAATTTGTTTCTGGACGATTTCTTCCTCGATTCGATCATTATTTGCGTGTTCGGAAATCTATGTGATTTTAGATTTGTATGTTTGTTTGCCTGTAAAATTTTGGGGAGTTTGAGCGGTAAGTAATCGATGATGAAAACGATGACTTGGTTAGTTTTTTAAATGTCGCGATTTGATGAAGTTTTTCCTTTACTATTTTTGTTTCTATGTTCAATTCCCCTCTTTCTTTAGGTATCTTGAGCTTCTAGCTGTTTTCGTCTTCGATTACATCATTAATTTTATGTAGAAAGAAACTCTATGATTTCGGACAATCGTTTTGGTTGGATAGAGATTTTGGGAATTGGAAGTTAGGAACCTTAGAATTTTGCTGTGAAATCTTAGAGAATCACGATGAAGCTCTTCCCTTGTCAGAGATCCCTTTTCTTGATGTAACAGCAGTCCTCATATCCCCAATCGCCATTGAACTAGCTTGCCTCCTCCTTCAGTCACCACATTCACCATGCTACATTGATTTTTGAAAGTCTTGGAAATTTGTAGCCTTAAGCTCATGTCCAGTTCGCAAGTGAAGCTTTGATTAAAAAAAATCTGTTCTTTTGATTTTTTTTTTTAAATGGGGGGAAAAAGGAAGCAGTTCTACCAAAATTTTCTTGCTTTAGGATAACATTTTTCTTCGGTTGGCTGACTCTTTAGATTGTCTTGTTAACATTCCACATAACTCAAAGGTTTTAAGATAAATTCAGTATTGGAATGGTTTCATTAGGATCGGAAAGTAAGGAACACATGAGTTTGCTTCACACAAATTACATACTTTCTATCCTCGGGAGAAAAGCCAGTATCGTTAGTCTTCTGGGAGATGATCAGGCTGGTTGGAAAGATTTATTGACCTTTTGGTCTTTAGGTTGTTTGTTGGTCCGTTAAAGTGAAAGTTTCTTGTTTCCTATAAAATAGAAGTTCTTCTATTGTAATAATATTGTACATCATGCGTCTTTTATTGTTGTGATTTGGAGAATTGATTGAAGCAAATTGTGAGTTGTTGGATGAATTACAGTTTAACTTCCGGAACCAATAATTATACCAGAATCCATTGTATTTCTAGATTGTCAGTGGAATCTTGATATGTCAATTGAAGGAAGTTTCATTAAATTATTAACATGGTTATATTTATTTGCAAGGTATTTGAAGTAGATCAAGATGTTAGAGCAGTTGTTGATATTCACTAGGGGTGGTTTAATTCTATGGACTTGTAAGGAGCTTGGAAATGCACTTAAAGGGTCTCCTATTGACACTTTAATCAGATCCTGTCTCTTAGAGGAGCGATCTGGTGCTGCATCTTATAATTATGATGCTCCAGGTGCTGCTTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTATTTGTTGCGGTGTATCAACGGATCCTTCATTTATTGTATGTGGATGATTTGCTTGCAATGGTGAAGCAGGGGTTTTCTGAGATTTATGATCCAAAGCGGATGGTCTATGATGATTTTGATGAAACTTTTAGGCAACTTAGAATGGAGGCTGAGGCTCGTGCTAGTGAGTTGAAAAGGTCAAAGCAGGTGGCGATGAAGCCAGTGAACAATGCCAGGAAGCAAGGGCAGGATCAAAAAACTGGATTTGGAGAAAACAAGAAAAGCAACAGTGGTTTGGCAGATGTTGGTGATGCTGAGCGTACAAAAAGTCATCAGTTGGAGAATGGTTACTCCAATGGCAATCGTGTTATAGAATCTAAACTAACCGCTGTTGTTAATGGAAAAGAAAATGCAAGTTCCAATGTTGGGGCTTTTGATGTAAATAAACTTCAGAAGCTTAGGTCTAAAGGTGGGAAGAAAACTGATACTGTTGTTAATAAGGGCTCCAAGGAAGAGTCAAAGAAAAAGGTAACAAAGAAGAATAGAGTTTGGGATGATAAACCTGTTGAGGCAAAATTGGACTTCACAGATCCTGTGGGTGAGAATGGGGAGAACAATATTGAGGTTTTGGCAGCAGACCAGGGGCAAAGTATGATGGACAAAGAAGAGGTCTTTAGTAGTGACAGTGAGGATGAAGAAGATGAGGAAGGTAGCCAGGGAAGTAAGCTCGAGGCGAAGAAGAAAGGATGGTTTTCATCTATGTTCCAGAGGTAAACTTCTTTATTTCATGCATGTTCTACGTTCATAACCTCATCTTCAGTGACCGGTTTACTAGCAATGTAAGAAAAAAGAAAAAAAAAAAGTTATGGATTATGGTAAACTTACACTCTTTAGTTTCTTGAGCTTGGGTTCATGCATGTTCTACATTCATAACCTCATCTTCGGTGACCGGTTTACTAACATTGTAAAAAAAAAAAAAAGTTGTGGATTATGGTTAACTTGCACTCTTTAGTTTCTTGAGCTTGGGTTTATGCAGTACGTCAATCATGTTATCTGACCTTTAAATTCTCAAACACATCAATTTGACATTTTTTTCATCCACAATTTTTGTTTCTGCTTTATTTTCCCCATATTTCAGATTTCTTCATTGTTGGTATGTGTTCAAAATGGTACTAATCTCCTCTCCTTCGCTCTCCAGTGTGAAAACATTAAGCTTTAAATACATTTGTTATCTGCACACTTTCATACATTTGAGCAGGATGATCACATCTGGGTTTTGTTGTCGAGTATAAAACTTGTCCCTTACGTTTCTTAGTGTACCAACAGGTCTTTGATACTGTCTTTAAGTAACAAAAGTGAGTCATATCGTATCGAAACTCTTTTGCAATCTTGATTACAAAATAAACTTATGTGTATGGATTATTTGGAATTTTAGAGATACAAGTGGGGCCTGGGGAGTGTATCTTATTAGTTTGTGTCATAGAGCAAGTGAGAGCTATCATAAATTGACACAACCAGAAATTTCATTTGTGATTACCTTGGCATGTTACTTTAATATGGGATTATTAATCTAAATTTCTTTTTATTTTTGGTGCTTTTATGTTCCCAGTATTTCAGGCAAGGCAAGTTTGGATAAGGCAGATCTGGAACCAGCTCTGAAAGCTCTCAAGGACAGGCTTATGACAAAGAATGTGGTATGTTTTTGCACCATATTTATCTTATCATCCCTTATTTTTAACTGTTGGCTGCAAATTTACAAGATATTTGCTTGTTGGATTTTAGGCTGAGGAGATAGCTGAGAAACTTTGTGAATCGGTAGCGGCTAGTCTTGAGGGAAAAAAGCTAGCTTCTTTCACCAGGATTTCGTCAACGGTGCAGGTACTTCGAATAGCTACTTAGTCACACTCCATTCTTTTTCCTCACCTACTTCATTTATTATTTAATTTTGTTAGTGATCGAAAACTTTGCTTTAATTTCTCATTGCAGAACGCAATGGAAGAAGCGCTCGTCCGTATTCTGACTCCAAGACGTTCCATTGACATTCTGAGGGATGTGCATACTGCACAAGAACAAAAGAAGCCTTATGTGGTCGTTTTTGTTGGTGTCAACGGAGTTGGAAAATCTACTAATCTTGCCAAGGTCAGGCCACCTTCTGCTGAAGTTCGTTCCGTTCGACCTATCTTTTGATTCGAGAGATAAATGCGTAAACTTTTGTGTACAGGTGGCTTATTGGCTTCTTCAGCATAAAGTTAGTGTCATGATGGCCGCTTGTGATACATTTAGATCCGGAGCCGTTGAGCAGCTTAGAACTCATGCTCGTAGACTTCAGGTATGGGATGATTATTTGATTAACCATGAAATTGTTTATCAGAACTCAGTCGCCTATATTTATCCTCGATCATTATTTTCAGATCCCTATATTCGAGAAGGGCTACGAGAAAGATCCTGCAATTGTGGCTAAAGAAGCAATCCAAGAGGCATCCCGCAATGGATCTGAGGTCGTTCTTGTTGACACAGCTGGGAGAATGCAGGTTTGTAACCTTTTCTTATTTATCCAAAATTGAAGTGATTGTGAATCTCTTGCTCCTCCGGGCTCCCGGCGCTCTCGTGGTTTGCGGGAAGGAAAAAGGACTCATCCTTTGTTGCATCTAGCACGAGTTGATAAAGAGAGAGCTTCGTCTGTCGTATATTTCATATCATGTCCTAAATTAAAAACAAAAGAACAAAAATAGAAGTGATTGTATTCTTAGTTTCAAAATTAGCTCCTCGTCATTCATATCCAAACATGTTGCAACTCCCAGGATAATGAACCACTCATGAGAGCTCTTTCAAAGCTTATCAACCTTAACAGTCCAGATCTAGTCTTGTTCGTCGGGGAGGCCCTCGTTGGGAATGATGCTGTCGATCAACTTTCAAAGTTCAATCAGGTTTCGTGTCTCTATCCATGGATCGGCTATAAGTTTGTTTACCTATGAGTTGTTTAGATGAGCTCTAATGCTTGCTTGCTCTTGTGTTCTTCGTTACTGCAGAAACTAGCTGACCTCTCTACTTCACCCAATCCTAGACTGATCGACGGTATCTTGCTCACAAAATTCGATACAATTGATGACAAGGTAAATAAATTTAGCACATTCCTAGTTATTATGAGAGCCTCATCAATCATTTTTCGGGTAATCTAACGCATCTTGGTTACTTACAACTTGCAGGTTGGAGCAGCATTGTCCATGGTTTACATATCTGGAGCACCAGTTATGTTTGTCGGCTGTGGACAGTCATATACCGACCTCAAGAAACTCAATGTCAAATCGATCGTCAAAACGCTTATTAAATAAGAGCTAAGCCACACAGTCGTGTACCAACCTCAAGAAACTAAATGTCAAACCGATCGCCAAAATGCTTAGCAAACGAGTGCTCTTTACAGTACAAAGTTTGGGAGGCCATGGCGTTGGGTAGATGTATTAAATGGTGAAATGTTGTGCTTGTGTTTGTTTGCCCCCTATGACCATCCTTTTGCTATATGCTTAACTTAATTTTAAGTGTATGCACTCAGTAGGTGTAATGTTATCCTTTAGTTTGTTGGATTGTTGATTTCTTTGGCCTCTCTTCTTGTGTATTTGAGGTCATTGTTATTATTATTTTTGCTATTTTAATTCTTCGTACACCCCAAATAAGGAGAAGTACATGAATGAACCGAGAC
mRNA sequence
TTCATTGTTCTTCCTCTTCTTGTAGAAAACTTTCTTCCTCCTTTTAAATATTTCCCTTAGATTTTATTTTTCTTTGTTTTTTCATTCAGATTTTCGTGAAAGGCCAGCGTTCCAGGTATTTGAAGTAGATCAAGATGTTAGAGCAGTTGTTGATATTCACTAGGGGTGGTTTAATTCTATGGACTTGTAAGGAGCTTGGAAATGCACTTAAAGGGTCTCCTATTGACACTTTAATCAGATCCTGTCTCTTAGAGGAGCGATCTGGTGCTGCATCTTATAATTATGATGCTCCAGGTGCTGCTTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTATTTGTTGCGGTGTATCAACGGATCCTTCATTTATTGTATGTGGATGATTTGCTTGCAATGGTGAAGCAGGGGTTTTCTGAGATTTATGATCCAAAGCGGATGGTCTATGATGATTTTGATGAAACTTTTAGGCAACTTAGAATGGAGGCTGAGGCTCGTGCTAGTGAGTTGAAAAGGTCAAAGCAGGTGGCGATGAAGCCAGTGAACAATGCCAGGAAGCAAGGGCAGGATCAAAAAACTGGATTTGGAGAAAACAAGAAAAGCAACAGTGGTTTGGCAGATGTTGGTGATGCTGAGCGTACAAAAAGTCATCAGTTGGAGAATGGTTACTCCAATGGCAATCGTGTTATAGAATCTAAACTAACCGCTGTTGTTAATGGAAAAGAAAATGCAAGTTCCAATGTTGGGGCTTTTGATGTAAATAAACTTCAGAAGCTTAGGTCTAAAGGTGGGAAGAAAACTGATACTGTTGTTAATAAGGGCTCCAAGGAAGAGTCAAAGAAAAAGGTAACAAAGAAGAATAGAGTTTGGGATGATAAACCTGTTGAGGCAAAATTGGACTTCACAGATCCTGTGGGTGAGAATGGGGAGAACAATATTGAGGTTTTGGCAGCAGACCAGGGGCAAAGTATGATGGACAAAGAAGAGGTCTTTAGTAGTGACAGTGAGGATGAAGAAGATGAGGAAGGTAGCCAGGGAAGTAAGCTCGAGGCGAAGAAGAAAGGATGGTTTTCATCTATGTTCCAGAGTATTTCAGGCAAGGCAAGTTTGGATAAGGCAGATCTGGAACCAGCTCTGAAAGCTCTCAAGGACAGGCTTATGACAAAGAATGTGGCTGAGGAGATAGCTGAGAAACTTTGTGAATCGGTAGCGGCTAGTCTTGAGGGAAAAAAGCTAGCTTCTTTCACCAGGATTTCGTCAACGGTGCAGAACGCAATGGAAGAAGCGCTCGTCCGTATTCTGACTCCAAGACGTTCCATTGACATTCTGAGGGATGTGCATACTGCACAAGAACAAAAGAAGCCTTATGTGGTCGTTTTTGTTGGTGTCAACGGAGTTGGAAAATCTACTAATCTTGCCAAGGTGGCTTATTGGCTTCTTCAGCATAAAGTTAGTGTCATGATGGCCGCTTGTGATACATTTAGATCCGGAGCCGTTGAGCAGCTTAGAACTCATGCTCGTAGACTTCAGATCCCTATATTCGAGAAGGGCTACGAGAAAGATCCTGCAATTGTGGCTAAAGAAGCAATCCAAGAGGCATCCCGCAATGGATCTGAGGTCGTTCTTGTTGACACAGCTGGGAGAATGCAGGATAATGAACCACTCATGAGAGCTCTTTCAAAGCTTATCAACCTTAACAGTCCAGATCTAGTCTTGTTCGTCGGGGAGGCCCTCGTTGGGAATGATGCTGTCGATCAACTTTCAAAGTTCAATCAGAAACTAGCTGACCTCTCTACTTCACCCAATCCTAGACTGATCGACGGTATCTTGCTCACAAAATTCGATACAATTGATGACAAGGTTGGAGCAGCATTGTCCATGGTTTACATATCTGGAGCACCAGTTATGTTTGTCGGCTGTGGACAGTCATATACCGACCTCAAGAAACTCAATGTCAAATCGATCGTCAAAACGCTTATTAAATAAGAGCTAAGCCACACAGTCGTGTACCAACCTCAAGAAACTAAATGTCAAACCGATCGCCAAAATGCTTAGCAAACGAGTGCTCTTTACAGTACAAAGTTTGGGAGGCCATGGCGTTGGGTAGATGTATTAAATGGTGAAATGTTGTGCTTGTGTTTGTTTGCCCCCTATGACCATCCTTTTGCTATATGCTTAACTTAATTTTAAGTGTATGCACTCAGTAGGTGTAATGTTATCCTTTAGTTTGTTGGATTGTTGATTTCTTTGGCCTCTCTTCTTGTGTATTTGAGGTCATTGTTATTATTATTTTTGCTATTTTAATTCTTCGTACACCCCAAATAAGGAGAAGTACATGAATGAACCGAGAC
Coding sequence (CDS)
ATGTTAGAGCAGTTGTTGATATTCACTAGGGGTGGTTTAATTCTATGGACTTGTAAGGAGCTTGGAAATGCACTTAAAGGGTCTCCTATTGACACTTTAATCAGATCCTGTCTCTTAGAGGAGCGATCTGGTGCTGCATCTTATAATTATGATGCTCCAGGTGCTGCTTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTATTTGTTGCGGTGTATCAACGGATCCTTCATTTATTGTATGTGGATGATTTGCTTGCAATGGTGAAGCAGGGGTTTTCTGAGATTTATGATCCAAAGCGGATGGTCTATGATGATTTTGATGAAACTTTTAGGCAACTTAGAATGGAGGCTGAGGCTCGTGCTAGTGAGTTGAAAAGGTCAAAGCAGGTGGCGATGAAGCCAGTGAACAATGCCAGGAAGCAAGGGCAGGATCAAAAAACTGGATTTGGAGAAAACAAGAAAAGCAACAGTGGTTTGGCAGATGTTGGTGATGCTGAGCGTACAAAAAGTCATCAGTTGGAGAATGGTTACTCCAATGGCAATCGTGTTATAGAATCTAAACTAACCGCTGTTGTTAATGGAAAAGAAAATGCAAGTTCCAATGTTGGGGCTTTTGATGTAAATAAACTTCAGAAGCTTAGGTCTAAAGGTGGGAAGAAAACTGATACTGTTGTTAATAAGGGCTCCAAGGAAGAGTCAAAGAAAAAGGTAACAAAGAAGAATAGAGTTTGGGATGATAAACCTGTTGAGGCAAAATTGGACTTCACAGATCCTGTGGGTGAGAATGGGGAGAACAATATTGAGGTTTTGGCAGCAGACCAGGGGCAAAGTATGATGGACAAAGAAGAGGTCTTTAGTAGTGACAGTGAGGATGAAGAAGATGAGGAAGGTAGCCAGGGAAGTAAGCTCGAGGCGAAGAAGAAAGGATGGTTTTCATCTATGTTCCAGAGTATTTCAGGCAAGGCAAGTTTGGATAAGGCAGATCTGGAACCAGCTCTGAAAGCTCTCAAGGACAGGCTTATGACAAAGAATGTGGCTGAGGAGATAGCTGAGAAACTTTGTGAATCGGTAGCGGCTAGTCTTGAGGGAAAAAAGCTAGCTTCTTTCACCAGGATTTCGTCAACGGTGCAGAACGCAATGGAAGAAGCGCTCGTCCGTATTCTGACTCCAAGACGTTCCATTGACATTCTGAGGGATGTGCATACTGCACAAGAACAAAAGAAGCCTTATGTGGTCGTTTTTGTTGGTGTCAACGGAGTTGGAAAATCTACTAATCTTGCCAAGGTGGCTTATTGGCTTCTTCAGCATAAAGTTAGTGTCATGATGGCCGCTTGTGATACATTTAGATCCGGAGCCGTTGAGCAGCTTAGAACTCATGCTCGTAGACTTCAGATCCCTATATTCGAGAAGGGCTACGAGAAAGATCCTGCAATTGTGGCTAAAGAAGCAATCCAAGAGGCATCCCGCAATGGATCTGAGGTCGTTCTTGTTGACACAGCTGGGAGAATGCAGGATAATGAACCACTCATGAGAGCTCTTTCAAAGCTTATCAACCTTAACAGTCCAGATCTAGTCTTGTTCGTCGGGGAGGCCCTCGTTGGGAATGATGCTGTCGATCAACTTTCAAAGTTCAATCAGAAACTAGCTGACCTCTCTACTTCACCCAATCCTAGACTGATCGACGGTATCTTGCTCACAAAATTCGATACAATTGATGACAAGGTTGGAGCAGCATTGTCCATGGTTTACATATCTGGAGCACCAGTTATGTTTGTCGGCTGTGGACAGTCATATACCGACCTCAAGAAACTCAATGTCAAATCGATCGTCAAAACGCTTATTAAATAA
Protein sequence
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYDDFDETFRQLRMEAEARASELKRSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLADVGDAERTKSHQLENGYSNGNRVIESKLTAVVNGKENASSNVGAFDVNKLQKLRSKGGKKTDTVVNKGSKEESKKKVTKKNRVWDDKPVEAKLDFTDPVGENGENNIEVLAADQGQSMMDKEEVFSSDSEDEEDEEGSQGSKLEAKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK
Homology
BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match:
Q9U5L1 (Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster OX=7227 GN=SrpRalpha PE=1 SV=2)
HSP 1 Score: 437.2 bits (1123), Expect = 3.1e-121
Identity = 285/643 (44.32%), Postives = 396/643 (61.59%), Query Frame = 0
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
ML+ ++IFT+GG++LW GN+ S I++LIR +LEER+ A Y Y+ A K
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLAVQFK 60
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYD-DFDETFRQLRME 120
NEL LV+ A++Q+++ L Y+D LA ++ F E Y R+ D DFD +R++
Sbjct: 61 --LDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 120
Query: 121 A-EARASELKRSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLADVGDAERTKSHQLEN 180
A EA A ++K K M+ N ++K + + ++KK ++ +A Q
Sbjct: 121 AEEASAKQVKAPK--TMRSYNESQKSKKTVASMIQDDKKPVEKRVNIQEAPPPSKSQ--- 180
Query: 181 GYSNGNRVIESKLTAVVNGKENASSNVGAFDVNKLQKLRSK--GGKKTDTVVNKGSKEES 240
S + + K +KLR K KKT +K SK E
Sbjct: 181 -----------------PSSPPTGSPMDKIIMEKRRKLREKLTPTKKTSPSDSKSSKPE- 240
Query: 241 KKKVTKKNRVWD---DKPVEAKLDFT-DPVGENGENNIEVLAADQGQSMMDKEEVFSSDS 300
K KK RVWD + A LD + D + NI Q ++ +V S D
Sbjct: 241 --KAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESEDE 300
Query: 301 EDEED--EEGSQGSKLEAK--KKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNV 360
D ED EG ++++K K+G S F+ I G ++ ADL+PAL+ ++D L++KNV
Sbjct: 301 ADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNV 360
Query: 361 AEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQE 420
A EIA KLC+SVAASL+GK++ +F I+S V+ A+ E+LVRIL+P+R IDI+RD ++
Sbjct: 361 ASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKR 420
Query: 421 QKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-- 480
+PY ++F GVNGVGKSTNLAK+ +WL+++ +V++AACDTFR+GAVEQLRTH R L
Sbjct: 421 NGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNA 480
Query: 481 -----------QIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQDNEPLMRA 540
+ ++EKGY KD A +A EAI+ A +VVLVDTAGRMQDNEPLMR+
Sbjct: 481 LHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRS 540
Query: 541 LSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTID 600
LSKLI +N+PDLVLFVGEALVGN+AVDQL KFNQ LAD S++ NP +IDGI+LTKFDTID
Sbjct: 541 LSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTID 600
Query: 601 DKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
DKVGAA+SM YI+G P++FVG GQ+Y DLK +NV ++V +L+K
Sbjct: 601 DKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLMK 614
BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match:
Q54ZR7 (Signal recognition particle receptor subunit alpha OS=Dictyostelium discoideum OX=44689 GN=srpra PE=3 SV=1)
HSP 1 Score: 435.6 bits (1119), Expect = 9.1e-121
Identity = 277/644 (43.01%), Postives = 394/644 (61.18%), Query Frame = 0
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
ML+ I T+GG++LW+ KE +KGSPI++LI+ LLEERS S+ D +Y+LK
Sbjct: 1 MLDSFTILTKGGIVLWS-KEFAK-IKGSPINSLIKKVLLEERSAETSFQID----SYSLK 60
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIY---------DPKRMVYDDFDE 120
WTF NE L+FV VYQ+I LLY+++LL VK+ F ++Y ++ D F E
Sbjct: 61 WTFSNEFDLIFVVVYQKIFTLLYIEELLTTVKKRFIKMYKDLLLKLKESSDFIIVDKFQE 120
Query: 121 TFRQLRMEAEARASELKRSKQVAMKPVNN--------------ARKQGQDQKTGFGENKK 180
++ +E S+L+++ A K + A K+G+ +K E +K
Sbjct: 121 FNFEVILEDVENRSKLQQTSNSAPKKYEDTDKGKLVKDQKNERAIKEGRVEKVKRKEQEK 180
Query: 181 SNSGLADVGDAERTKSHQLE--NGYSNGNRVIESKLTAVVNGKENASSNVGAFDVNKLQK 240
AER K ++ N S+ + +S ++ + +EN S+ + +
Sbjct: 181 KEK-------AERRKQNKANNINDISSDDDSDDSDSSSGSDSEEN-SNGATKNQQTDVAR 240
Query: 241 LRSKGGKKTDTVVNKGSKEESKKKVTKKNRVWDDKPVEAKLDFTDPVGENGENNIEVLAA 300
+ + G KK V +++ KK R W+D + K + + + +N +
Sbjct: 241 IENSGYKKK---VKDTPDKQASSSTGKKARTWEDGKLSKK--ELEALNRSDNSNGTEIVR 300
Query: 301 DQGQSMMDKEEVFSSDSEDEEDEEGSQGSKLEAKKKGWFSSMFQSISGKASLDKADLEPA 360
++ Q +V SSD +DEE EAK F F ++G +DK DLEP
Sbjct: 301 EKIQKFNIDMDVSSSDDDDEE----------EAKPVSGFMKYFNVLTGNRVIDKQDLEPI 360
Query: 361 LKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRR 420
L K L KNVA ++A+K+ +S+ LEGKKLA+F ++S V+ ME+ + RILTP+R
Sbjct: 361 LADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATFQGVTSVVKQQMEDTITRILTPKR 420
Query: 421 SIDILRDVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA 480
+IDILR+V A + K+PY +VF GVNGVGKSTNLAKV YWL + M+AACDTFRSGA
Sbjct: 421 NIDILREVQ-AVKGKRPYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACDTFRSGA 480
Query: 481 VEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQDNEPLMRA 540
+EQL+THA RL + +FE+GY KD A VA++AI A G +VVL+DT GRMQ+NEPLM+A
Sbjct: 481 IEQLKTHADRLNVHLFERGYSKDAASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKA 540
Query: 541 LSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADL--STSPNPRLIDGILLTKFDT 600
LSKL+N N+ DLVLFVGEALVGND VDQL+KF++ L+ L +T + R IDGI+LTKFDT
Sbjct: 541 LSKLVNQNNVDLVLFVGEALVGNDGVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFDT 600
Query: 601 IDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLI 618
IDDKVGAA+SMVY +G P++F+G GQ+YTDLK++N+KS+VK+L+
Sbjct: 601 IDDKVGAAISMVYSTGHPILFLGTGQNYTDLKRMNIKSVVKSLL 614
BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match:
Q9DBG7 (Signal recognition particle receptor subunit alpha OS=Mus musculus OX=10090 GN=Srpra PE=1 SV=1)
HSP 1 Score: 415.2 bits (1066), Expect = 1.3e-114
Identity = 271/650 (41.69%), Postives = 378/650 (58.15%), Query Frame = 0
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G S+ ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 60
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYD---------DFDE 120
+ N+ LVFV +Q+IL L YVD L+ V + F + Y + DF
Sbjct: 61 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 120
Query: 121 TFRQLRMEAEARASELKRSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLADVGDAERT 180
F +L EAE + + + A+K + GE K + + +R
Sbjct: 121 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKTKEKA----KNNKKRG 180
Query: 181 KSHQLENGYSNGNRVIESKLTAVVNGKENASSNVGAFDVNKLQKLRSKGGKKTDTVVNKG 240
+ +G ++ ++ + + G EN + K ++ K GK D
Sbjct: 181 AKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQKHGKGLDKSSKST 240
Query: 241 SKEESKKKVTKKNRVWDDKPVEAK--LDFTDPVGEN------GENNIEVLAADQGQSMMD 300
+ K+K K RVW+ K LD++ P E+ + G + D
Sbjct: 241 KSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGPGGQLQD 300
Query: 301 KEEVFSSDSEDEEDEEGSQGSKLEAKK--KGWFSSMFQSISGKASLDKADLEPALKALKD 360
D +DE +Q +K A K G M + + G SL + D+E L ++D
Sbjct: 301 ------LDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRD 360
Query: 361 RLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSIDILR 420
L+ KNVA +IA +LCESVA LEGK + +F+ ++STV+ A++E+LV+IL P+R +D+LR
Sbjct: 361 HLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLR 420
Query: 421 DVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT 480
D+ AQ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AACDTFR+GAVEQLRT
Sbjct: 421 DIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRT 480
Query: 481 HARRL-------------QIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQD 540
H RRL + +FEKGY KD A +A EAI A G +VVLVDTAGRMQD
Sbjct: 481 HTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 540
Query: 541 NEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILL 600
N PLM AL+KLI +N+PDLVLFVGEALVGN+AVDQL KFN+ LAD S + PRLIDGI+L
Sbjct: 541 NAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVL 600
Query: 601 TKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
TKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL+ LN K++V L+K
Sbjct: 601 TKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 635
BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match:
Q3MHE8 (Signal recognition particle receptor subunit alpha OS=Bos taurus OX=9913 GN=SRPRA PE=2 SV=1)
HSP 1 Score: 412.5 bits (1059), Expect = 8.2e-114
Identity = 272/660 (41.21%), Postives = 382/660 (57.88%), Query Frame = 0
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G S+ ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 60
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYD---------DFDE 120
+ N+ LVFV +Q+IL L YVD L+ V + F + Y + DF
Sbjct: 61 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 120
Query: 121 TFRQLRMEAEARASELK--------RSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLA 180
F +L EAE +S+++ + A KPV + + ++ +N K N G
Sbjct: 121 DFLRLLREAE-ESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAK 180
Query: 181 DVGDAERTKSHQLENGYSNGNRVIESKLTAVVNGKENASSNVGAFDV-NKLQKLRSKGGK 240
G +G ++ ++ + + G EN + K ++ K G+
Sbjct: 181 KEG----------SDGPLATSKAAPAEKSGLPVGPENGEELSKEEQIRRKREEFIQKHGR 240
Query: 241 KTDTVVNKGSKEESKKKVTKKNRVW--DDKPVEAKLDFTDPVGENG------ENNIEVLA 300
+ + K+K K RVW + LD++ P E+ +
Sbjct: 241 GMEKSSKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPTTNGAPEAAPPEDINLIRG 300
Query: 301 ADQGQSMMDKEEVFSSDSEDEEDEEGSQGSKLEAKKKGWFSSMF---QSISGKASLDKAD 360
G+ + D D +DE +Q S + KG MF + + G SL + D
Sbjct: 301 TGPGRQLQD------LDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLTRED 360
Query: 361 LEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRIL 420
+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++STV+ A++E+LV+IL
Sbjct: 361 MESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQIL 420
Query: 421 TPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 480
P+R +D+LRD+ AQ ++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AACDTF
Sbjct: 421 QPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTF 480
Query: 481 RSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAIVAKEAIQEASRNGSEVV 540
R+GAVEQLRTH RRL + +FEKGY KD A +A EAI A G +VV
Sbjct: 481 RAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVV 540
Query: 541 LVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSP 600
LVDTAGRMQDN PLM AL+KLI +N+PDLVLFVGEALVGN+AVDQL KFN+ LAD S +
Sbjct: 541 LVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQ 600
Query: 601 NPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
PRLIDGI+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL+ LN K++V L+K
Sbjct: 601 TPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 638
BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match:
P08240 (Signal recognition particle receptor subunit alpha OS=Homo sapiens OX=9606 GN=SRPRA PE=1 SV=2)
HSP 1 Score: 410.6 bits (1054), Expect = 3.1e-113
Identity = 275/653 (42.11%), Postives = 388/653 (59.42%), Query Frame = 0
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G S+ ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 60
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYD---------DFDE 120
+ N+ LVFV +Q+IL L YVD L+ V + F + Y + DF
Sbjct: 61 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 120
Query: 121 TFRQLRMEAEARASELKRSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLADVGDAERT 180
F +L EAE + + + A+K + GE K + + A++
Sbjct: 121 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 180
Query: 181 KSHQLENGYSNGNRVIESKLTAVVNGKEN-ASSNVGAFDVNKLQKLRSKGGKKTDTVVNK 240
S +G ++ + ++ + + G EN + K ++ K G+ + NK
Sbjct: 181 GS----DGPLATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEK-SNK 240
Query: 241 GSKEES-KKKVTKKNRVWDDKPVEAK--LDFTDPVGENG------ENNIEVLAADQGQSM 300
+K ++ K+K K RVW+ K LD++ P NG +I ++
Sbjct: 241 STKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPT-TNGTPEAALSEDINLIRGTGSGGQ 300
Query: 301 MDKEEVFSSDSEDEEDEEGSQGSKLEAKKKGWFSSMF---QSISGKASLDKADLEPALKA 360
+ + SSD DE +Q S + KG MF + + G SL + D+E L
Sbjct: 301 LQDLDCSSSD-----DEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDK 360
Query: 361 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSID 420
++D L+ KNVA +IA +LCESVA LEGK + +F+ ++STV+ A++E+LV+IL P+R +D
Sbjct: 361 MRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVD 420
Query: 421 ILRDVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 480
+LRD+ AQ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AACDTFR+GAVEQ
Sbjct: 421 MLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQ 480
Query: 481 LRTHARRL-------------QIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGR 540
LRTH RRL + +FEKGY KD A +A EAI A G +VVLVDTAGR
Sbjct: 481 LRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGR 540
Query: 541 MQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDG 600
MQDN PLM AL+KLI +N+PDLVLFVGEALVGN+AVDQL KFN+ LAD S + PRLIDG
Sbjct: 541 MQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDG 600
Query: 601 ILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
I+LTKFDTIDDKVGAA+SM YI+ P++FVG GQ+Y DL+ LN K++V L+K
Sbjct: 601 IVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 637
BLAST of CmaCh12G008550 vs. TAIR 10
Match:
AT4G30600.1 (signal recognition particle receptor alpha subunit family protein )
HSP 1 Score: 921.0 bits (2379), Expect = 5.1e-268
Identity = 505/636 (79.40%), Postives = 557/636 (87.58%), Query Frame = 0
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
MLEQLLIFTRGGLILWTCKE+GNALKGSPIDTLIRSCLLEERSGA S+NYDAPGAAYTLK
Sbjct: 1 MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYDDFDETFRQLRMEA 120
WTFHN+LGLVFVAVYQRILHLLYVDDLL+MVKQ FSE+YDPKRM YDDFDETFRQLR+EA
Sbjct: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMAYDDFDETFRQLRIEA 120
Query: 121 EARASELKRSKQVAMKPVNNARKQGQDQKTGF-GENKKSNS---GLADVGD-AERTKSHQ 180
EARA EL+++KQV KPV + +KQGQ K G G NK+ +S D GD + K
Sbjct: 121 EARAEELRKTKQVG-KPVTSVKKQGQVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAKVST 180
Query: 181 LENGYSNGNRVIE---SKLTAVVNGKENASSNVGAFDVNKLQKLRSK------GGKKTDT 240
L NG+SNGN +E + + NGKEN SSNV A D++KLQKLRSK G +KTD+
Sbjct: 181 LTNGHSNGNHQMEDDSQETNDLANGKENTSSNV-AVDLSKLQKLRSKGVRGRGGVRKTDS 240
Query: 241 VVNKGSK-EESKKKVTKKNRVWDD-KPVEAKLDFTDPVGENGEN-NIEVLAADQGQSMMD 300
+ NK SK E KK TKKNRVWDD P ++KLDFTD + ENG N +++++AADQG+SMMD
Sbjct: 241 IGNKSSKVAEPAKKATKKNRVWDDAAPKQSKLDFTDSIDENGNNDHVDIVAADQGESMMD 300
Query: 301 KEEVFSSDSEDEEDEE-GSQGSKLEAKKKGWFSSMFQSISGKASLDKADLEPALKALKDR 360
KEEVFSSDSE E+D+E GS +AKKKGWFSS+FQSI+GKA+L++ DL PALKALK+R
Sbjct: 301 KEEVFSSDSESEDDDEPGSDEKPAQAKKKGWFSSVFQSITGKANLERTDLGPALKALKER 360
Query: 361 LMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSIDILRD 420
LMTKNVAEEIAEKLCESV ASLEGKKL+SFTRISSTVQ AME+ALVRILTPRRSIDILRD
Sbjct: 361 LMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILRD 420
Query: 421 VHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH 480
VH A+EQ+KPYVVVFVGVNGVGKSTNLAKVAYWL QHKVSVMMAACDTFRSGAVEQLRTH
Sbjct: 421 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTH 480
Query: 481 ARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINL 540
ARRLQIPIFEKGYEKDPA+VAKEAIQEA+RNGS+VVLVDTAGRMQDNEPLMRALSKLINL
Sbjct: 481 ARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL 540
Query: 541 NSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAAL 600
N PDLVLFVGEALVGNDAVDQLSKFNQKL+DLSTS NPRLIDGILLTKFDTIDDKVGAAL
Sbjct: 541 NQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAAL 600
Query: 601 SMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
SMVYISG+PVMFVGCGQSYTDLKKLNVK+IVKTL+K
Sbjct: 601 SMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLLK 634
BLAST of CmaCh12G008550 vs. TAIR 10
Match:
AT1G48900.1 (Signal recognition particle, SRP54 subunit protein )
HSP 1 Score: 125.6 bits (314), Expect = 1.4e-28
Identity = 82/310 (26.45%), Postives = 151/310 (48.71%), Query Frame = 0
Query: 308 AKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 367
A+ G + Q +S +D+ L L + L+ +V+ + +++ ++ + +
Sbjct: 4 AELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLE 63
Query: 368 KLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKST 427
LA+ ++ A+ L ++L P + A ++ K VV+FVG+ G GK+T
Sbjct: 64 DLAAGHNKRRIIEQAIFSELCKMLDPGKPA-------FAPKKAKASVVMFVGLQGAGKTT 123
Query: 428 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAI 487
K AY+ + + DTFR+GA +QL+ +A + +IP + E DP +A E +
Sbjct: 124 TCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGV 183
Query: 488 QEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKF 547
+ ++++VDT+GR + L + ++ PDLV+FV ++ +G A DQ F
Sbjct: 184 DTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAF 243
Query: 548 NQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKL 607
Q +A + +++TK D K G ALS V + +PV+F+G G+ + +
Sbjct: 244 KQSVA----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF 295
Query: 608 NVKSIVKTLI 618
+VK V L+
Sbjct: 304 DVKPFVSRLL 295
BLAST of CmaCh12G008550 vs. TAIR 10
Match:
AT1G48900.2 (Signal recognition particle, SRP54 subunit protein )
HSP 1 Score: 125.6 bits (314), Expect = 1.4e-28
Identity = 82/310 (26.45%), Postives = 151/310 (48.71%), Query Frame = 0
Query: 308 AKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 367
A+ G + Q +S +D+ L L + L+ +V+ + +++ ++ + +
Sbjct: 4 AELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLE 63
Query: 368 KLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKST 427
LA+ ++ A+ L ++L P + A ++ K VV+FVG+ G GK+T
Sbjct: 64 DLAAGHNKRRIIEQAIFSELCKMLDPGKPA-------FAPKKAKASVVMFVGLQGAGKTT 123
Query: 428 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAI 487
K AY+ + + DTFR+GA +QL+ +A + +IP + E DP +A E +
Sbjct: 124 TCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGV 183
Query: 488 QEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKF 547
+ ++++VDT+GR + L + ++ PDLV+FV ++ +G A DQ F
Sbjct: 184 DTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAF 243
Query: 548 NQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKL 607
Q +A + +++TK D K G ALS V + +PV+F+G G+ + +
Sbjct: 244 KQSVA----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF 295
Query: 608 NVKSIVKTLI 618
+VK V L+
Sbjct: 304 DVKPFVSRLL 295
BLAST of CmaCh12G008550 vs. TAIR 10
Match:
AT1G15310.1 (signal recognition particle 54 kDa subunit )
HSP 1 Score: 124.4 bits (311), Expect = 3.2e-28
Identity = 82/310 (26.45%), Postives = 152/310 (49.03%), Query Frame = 0
Query: 308 AKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 367
A+ G + Q ++ +D+ L L + L+ +V+ + EK+ ++ +
Sbjct: 4 AELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLD 63
Query: 368 KLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKST 427
LA+ ++ A+ + L R+L P + A ++ KP VV+FVG+ G GK+T
Sbjct: 64 DLAAGHNKRLIIEQAIFKELCRMLDPGKPA-------FAPKKAKPSVVMFVGLQGAGKTT 123
Query: 428 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAI 487
K AY+ + + DTFR+GA +QL+ +A + +IP + E DP +A E +
Sbjct: 124 TCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGV 183
Query: 488 QEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKF 547
+ ++++VDT+GR + L + ++ PDLV+FV ++ +G A +Q F
Sbjct: 184 DRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAF 243
Query: 548 NQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKL 607
+ ++ + +++TK D K G ALS V + +PV+F+G G+ + +
Sbjct: 244 KETVS----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF 295
Query: 608 NVKSIVKTLI 618
+VK V L+
Sbjct: 304 DVKPFVSRLL 295
BLAST of CmaCh12G008550 vs. TAIR 10
Match:
AT5G03940.1 (chloroplast signal recognition particle 54 kDa subunit )
HSP 1 Score: 123.6 bits (309), Expect = 5.4e-28
Identity = 82/295 (27.80%), Postives = 153/295 (51.86%), Query Frame = 0
Query: 312 GWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 371
G + + + G+ L K ++ ++ ++ L+ +V+ + + +SV+ G +
Sbjct: 83 GGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIR 142
Query: 372 FTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKK-PYVVVFVGVNGVGKSTNLA 431
+ + + + LV+++ +V Q K P V++ G+ GVGK+T A
Sbjct: 143 GVKPDQQLVKIVHDELVKLMG--------GEVSELQFAKSGPTVILLAGLQGVGKTTVCA 202
Query: 432 KVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEA 491
K+A +L + S M+ A D +R A++QL ++ +P++ G + PA +AK+ ++EA
Sbjct: 203 KLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEA 262
Query: 492 SRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQK 551
+N +VV++DTAGR+Q ++ +M L + +P VL V +A+ G +A ++ FN +
Sbjct: 263 KKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVE 322
Query: 552 LADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLK 606
+ I G +LTK D D + GAALS+ +SG P+ VG G+ DL+
Sbjct: 323 IG----------ITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLE 358
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9U5L1 | 3.1e-121 | 44.32 | Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanog... | [more] |
Q54ZR7 | 9.1e-121 | 43.01 | Signal recognition particle receptor subunit alpha OS=Dictyostelium discoideum O... | [more] |
Q9DBG7 | 1.3e-114 | 41.69 | Signal recognition particle receptor subunit alpha OS=Mus musculus OX=10090 GN=S... | [more] |
Q3MHE8 | 8.2e-114 | 41.21 | Signal recognition particle receptor subunit alpha OS=Bos taurus OX=9913 GN=SRPR... | [more] |
P08240 | 3.1e-113 | 42.11 | Signal recognition particle receptor subunit alpha OS=Homo sapiens OX=9606 GN=SR... | [more] |
Match Name | E-value | Identity | Description | |
AT4G30600.1 | 5.1e-268 | 79.40 | signal recognition particle receptor alpha subunit family protein | [more] |
AT1G48900.1 | 1.4e-28 | 26.45 | Signal recognition particle, SRP54 subunit protein | [more] |
AT1G48900.2 | 1.4e-28 | 26.45 | Signal recognition particle, SRP54 subunit protein | [more] |
AT1G15310.1 | 3.2e-28 | 26.45 | signal recognition particle 54 kDa subunit | [more] |
AT5G03940.1 | 5.4e-28 | 27.80 | chloroplast signal recognition particle 54 kDa subunit | [more] |