CmaCh12G008550 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	signal recognition particle receptor subunit alpha homolog
Location	Cma_Chr12: 6326307 .. 6331664 (+)
RNA-Seq Expression	CmaCh12G008550
Synteny	CmaCh12G008550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATTGTTCTTCCTCTTCTTGTAGAAAACTTTCTTCCTCCTTTTAAATATTTCCCTTAGATTTTATTTTTCTTTGTTTTTTCATTCAGATTTTCGTGAAAGGCCAGCGTTCCAGGTTTGTTTAATCTCTCCTCGTTTTTTCCGATTCATGAATTTCATGTATTTCACTTTTTGATTGGAATCGTTACGATCTATTGTAATTTCGTTTGATCCATCACCTAGATTGAAATTAGGTCTCTGTGATTTACACATCATCGGTCGTGGTGTTTTTTATTTTCTTTCGAAATTTGTTTCTGGACGATTTCTTCCTCGATTCGATCATTATTTGCGTGTTCGGAAATCTATGTGATTTTAGATTTGTATGTTTGTTTGCCTGTAAAATTTTGGGGAGTTTGAGCGGTAAGTAATCGATGATGAAAACGATGACTTGGTTAGTTTTTTAAATGTCGCGATTTGATGAAGTTTTTCCTTTACTATTTTTGTTTCTATGTTCAATTCCCCTCTTTCTTTAGGTATCTTGAGCTTCTAGCTGTTTTCGTCTTCGATTACATCATTAATTTTATGTAGAAAGAAACTCTATGATTTCGGACAATCGTTTTGGTTGGATAGAGATTTTGGGAATTGGAAGTTAGGAACCTTAGAATTTTGCTGTGAAATCTTAGAGAATCACGATGAAGCTCTTCCCTTGTCAGAGATCCCTTTTCTTGATGTAACAGCAGTCCTCATATCCCCAATCGCCATTGAACTAGCTTGCCTCCTCCTTCAGTCACCACATTCACCATGCTACATTGATTTTTGAAAGTCTTGGAAATTTGTAGCCTTAAGCTCATGTCCAGTTCGCAAGTGAAGCTTTGATTAAAAAAAATCTGTTCTTTTGATTTTTTTTTTTAAATGGGGGGAAAAAGGAAGCAGTTCTACCAAAATTTTCTTGCTTTAGGATAACATTTTTCTTCGGTTGGCTGACTCTTTAGATTGTCTTGTTAACATTCCACATAACTCAAAGGTTTTAAGATAAATTCAGTATTGGAATGGTTTCATTAGGATCGGAAAGTAAGGAACACATGAGTTTGCTTCACACAAATTACATACTTTCTATCCTCGGGAGAAAAGCCAGTATCGTTAGTCTTCTGGGAGATGATCAGGCTGGTTGGAAAGATTTATTGACCTTTTGGTCTTTAGGTTGTTTGTTGGTCCGTTAAAGTGAAAGTTTCTTGTTTCCTATAAAATAGAAGTTCTTCTATTGTAATAATATTGTACATCATGCGTCTTTTATTGTTGTGATTTGGAGAATTGATTGAAGCAAATTGTGAGTTGTTGGATGAATTACAGTTTAACTTCCGGAACCAATAATTATACCAGAATCCATTGTATTTCTAGATTGTCAGTGGAATCTTGATATGTCAATTGAAGGAAGTTTCATTAAATTATTAACATGGTTATATTTATTTGCAAGGTATTTGAAGTAGATCAAGATGTTAGAGCAGTTGTTGATATTCACTAGGGGTGGTTTAATTCTATGGACTTGTAAGGAGCTTGGAAATGCACTTAAAGGGTCTCCTATTGACACTTTAATCAGATCCTGTCTCTTAGAGGAGCGATCTGGTGCTGCATCTTATAATTATGATGCTCCAGGTGCTGCTTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTATTTGTTGCGGTGTATCAACGGATCCTTCATTTATTGTATGTGGATGATTTGCTTGCAATGGTGAAGCAGGGGTTTTCTGAGATTTATGATCCAAAGCGGATGGTCTATGATGATTTTGATGAAACTTTTAGGCAACTTAGAATGGAGGCTGAGGCTCGTGCTAGTGAGTTGAAAAGGTCAAAGCAGGTGGCGATGAAGCCAGTGAACAATGCCAGGAAGCAAGGGCAGGATCAAAAAACTGGATTTGGAGAAAACAAGAAAAGCAACAGTGGTTTGGCAGATGTTGGTGATGCTGAGCGTACAAAAAGTCATCAGTTGGAGAATGGTTACTCCAATGGCAATCGTGTTATAGAATCTAAACTAACCGCTGTTGTTAATGGAAAAGAAAATGCAAGTTCCAATGTTGGGGCTTTTGATGTAAATAAACTTCAGAAGCTTAGGTCTAAAGGTGGGAAGAAAACTGATACTGTTGTTAATAAGGGCTCCAAGGAAGAGTCAAAGAAAAAGGTAACAAAGAAGAATAGAGTTTGGGATGATAAACCTGTTGAGGCAAAATTGGACTTCACAGATCCTGTGGGTGAGAATGGGGAGAACAATATTGAGGTTTTGGCAGCAGACCAGGGGCAAAGTATGATGGACAAAGAAGAGGTCTTTAGTAGTGACAGTGAGGATGAAGAAGATGAGGAAGGTAGCCAGGGAAGTAAGCTCGAGGCGAAGAAGAAAGGATGGTTTTCATCTATGTTCCAGAGGTAAACTTCTTTATTTCATGCATGTTCTACGTTCATAACCTCATCTTCAGTGACCGGTTTACTAGCAATGTAAGAAAAAAGAAAAAAAAAAAGTTATGGATTATGGTAAACTTACACTCTTTAGTTTCTTGAGCTTGGGTTCATGCATGTTCTACATTCATAACCTCATCTTCGGTGACCGGTTTACTAACATTGTAAAAAAAAAAAAAAGTTGTGGATTATGGTTAACTTGCACTCTTTAGTTTCTTGAGCTTGGGTTTATGCAGTACGTCAATCATGTTATCTGACCTTTAAATTCTCAAACACATCAATTTGACATTTTTTTCATCCACAATTTTTGTTTCTGCTTTATTTTCCCCATATTTCAGATTTCTTCATTGTTGGTATGTGTTCAAAATGGTACTAATCTCCTCTCCTTCGCTCTCCAGTGTGAAAACATTAAGCTTTAAATACATTTGTTATCTGCACACTTTCATACATTTGAGCAGGATGATCACATCTGGGTTTTGTTGTCGAGTATAAAACTTGTCCCTTACGTTTCTTAGTGTACCAACAGGTCTTTGATACTGTCTTTAAGTAACAAAAGTGAGTCATATCGTATCGAAACTCTTTTGCAATCTTGATTACAAAATAAACTTATGTGTATGGATTATTTGGAATTTTAGAGATACAAGTGGGGCCTGGGGAGTGTATCTTATTAGTTTGTGTCATAGAGCAAGTGAGAGCTATCATAAATTGACACAACCAGAAATTTCATTTGTGATTACCTTGGCATGTTACTTTAATATGGGATTATTAATCTAAATTTCTTTTTATTTTTGGTGCTTTTATGTTCCCAGTATTTCAGGCAAGGCAAGTTTGGATAAGGCAGATCTGGAACCAGCTCTGAAAGCTCTCAAGGACAGGCTTATGACAAAGAATGTGGTATGTTTTTGCACCATATTTATCTTATCATCCCTTATTTTTAACTGTTGGCTGCAAATTTACAAGATATTTGCTTGTTGGATTTTAGGCTGAGGAGATAGCTGAGAAACTTTGTGAATCGGTAGCGGCTAGTCTTGAGGGAAAAAAGCTAGCTTCTTTCACCAGGATTTCGTCAACGGTGCAGGTACTTCGAATAGCTACTTAGTCACACTCCATTCTTTTTCCTCACCTACTTCATTTATTATTTAATTTTGTTAGTGATCGAAAACTTTGCTTTAATTTCTCATTGCAGAACGCAATGGAAGAAGCGCTCGTCCGTATTCTGACTCCAAGACGTTCCATTGACATTCTGAGGGATGTGCATACTGCACAAGAACAAAAGAAGCCTTATGTGGTCGTTTTTGTTGGTGTCAACGGAGTTGGAAAATCTACTAATCTTGCCAAGGTCAGGCCACCTTCTGCTGAAGTTCGTTCCGTTCGACCTATCTTTTGATTCGAGAGATAAATGCGTAAACTTTTGTGTACAGGTGGCTTATTGGCTTCTTCAGCATAAAGTTAGTGTCATGATGGCCGCTTGTGATACATTTAGATCCGGAGCCGTTGAGCAGCTTAGAACTCATGCTCGTAGACTTCAGGTATGGGATGATTATTTGATTAACCATGAAATTGTTTATCAGAACTCAGTCGCCTATATTTATCCTCGATCATTATTTTCAGATCCCTATATTCGAGAAGGGCTACGAGAAAGATCCTGCAATTGTGGCTAAAGAAGCAATCCAAGAGGCATCCCGCAATGGATCTGAGGTCGTTCTTGTTGACACAGCTGGGAGAATGCAGGTTTGTAACCTTTTCTTATTTATCCAAAATTGAAGTGATTGTGAATCTCTTGCTCCTCCGGGCTCCCGGCGCTCTCGTGGTTTGCGGGAAGGAAAAAGGACTCATCCTTTGTTGCATCTAGCACGAGTTGATAAAGAGAGAGCTTCGTCTGTCGTATATTTCATATCATGTCCTAAATTAAAAACAAAAGAACAAAAATAGAAGTGATTGTATTCTTAGTTTCAAAATTAGCTCCTCGTCATTCATATCCAAACATGTTGCAACTCCCAGGATAATGAACCACTCATGAGAGCTCTTTCAAAGCTTATCAACCTTAACAGTCCAGATCTAGTCTTGTTCGTCGGGGAGGCCCTCGTTGGGAATGATGCTGTCGATCAACTTTCAAAGTTCAATCAGGTTTCGTGTCTCTATCCATGGATCGGCTATAAGTTTGTTTACCTATGAGTTGTTTAGATGAGCTCTAATGCTTGCTTGCTCTTGTGTTCTTCGTTACTGCAGAAACTAGCTGACCTCTCTACTTCACCCAATCCTAGACTGATCGACGGTATCTTGCTCACAAAATTCGATACAATTGATGACAAGGTAAATAAATTTAGCACATTCCTAGTTATTATGAGAGCCTCATCAATCATTTTTCGGGTAATCTAACGCATCTTGGTTACTTACAACTTGCAGGTTGGAGCAGCATTGTCCATGGTTTACATATCTGGAGCACCAGTTATGTTTGTCGGCTGTGGACAGTCATATACCGACCTCAAGAAACTCAATGTCAAATCGATCGTCAAAACGCTTATTAAATAAGAGCTAAGCCACACAGTCGTGTACCAACCTCAAGAAACTAAATGTCAAACCGATCGCCAAAATGCTTAGCAAACGAGTGCTCTTTACAGTACAAAGTTTGGGAGGCCATGGCGTTGGGTAGATGTATTAAATGGTGAAATGTTGTGCTTGTGTTTGTTTGCCCCCTATGACCATCCTTTTGCTATATGCTTAACTTAATTTTAAGTGTATGCACTCAGTAGGTGTAATGTTATCCTTTAGTTTGTTGGATTGTTGATTTCTTTGGCCTCTCTTCTTGTGTATTTGAGGTCATTGTTATTATTATTTTTGCTATTTTAATTCTTCGTACACCCCAAATAAGGAGAAGTACATGAATGAACCGAGAC

mRNA sequence

TTCATTGTTCTTCCTCTTCTTGTAGAAAACTTTCTTCCTCCTTTTAAATATTTCCCTTAGATTTTATTTTTCTTTGTTTTTTCATTCAGATTTTCGTGAAAGGCCAGCGTTCCAGGTATTTGAAGTAGATCAAGATGTTAGAGCAGTTGTTGATATTCACTAGGGGTGGTTTAATTCTATGGACTTGTAAGGAGCTTGGAAATGCACTTAAAGGGTCTCCTATTGACACTTTAATCAGATCCTGTCTCTTAGAGGAGCGATCTGGTGCTGCATCTTATAATTATGATGCTCCAGGTGCTGCTTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTATTTGTTGCGGTGTATCAACGGATCCTTCATTTATTGTATGTGGATGATTTGCTTGCAATGGTGAAGCAGGGGTTTTCTGAGATTTATGATCCAAAGCGGATGGTCTATGATGATTTTGATGAAACTTTTAGGCAACTTAGAATGGAGGCTGAGGCTCGTGCTAGTGAGTTGAAAAGGTCAAAGCAGGTGGCGATGAAGCCAGTGAACAATGCCAGGAAGCAAGGGCAGGATCAAAAAACTGGATTTGGAGAAAACAAGAAAAGCAACAGTGGTTTGGCAGATGTTGGTGATGCTGAGCGTACAAAAAGTCATCAGTTGGAGAATGGTTACTCCAATGGCAATCGTGTTATAGAATCTAAACTAACCGCTGTTGTTAATGGAAAAGAAAATGCAAGTTCCAATGTTGGGGCTTTTGATGTAAATAAACTTCAGAAGCTTAGGTCTAAAGGTGGGAAGAAAACTGATACTGTTGTTAATAAGGGCTCCAAGGAAGAGTCAAAGAAAAAGGTAACAAAGAAGAATAGAGTTTGGGATGATAAACCTGTTGAGGCAAAATTGGACTTCACAGATCCTGTGGGTGAGAATGGGGAGAACAATATTGAGGTTTTGGCAGCAGACCAGGGGCAAAGTATGATGGACAAAGAAGAGGTCTTTAGTAGTGACAGTGAGGATGAAGAAGATGAGGAAGGTAGCCAGGGAAGTAAGCTCGAGGCGAAGAAGAAAGGATGGTTTTCATCTATGTTCCAGAGTATTTCAGGCAAGGCAAGTTTGGATAAGGCAGATCTGGAACCAGCTCTGAAAGCTCTCAAGGACAGGCTTATGACAAAGAATGTGGCTGAGGAGATAGCTGAGAAACTTTGTGAATCGGTAGCGGCTAGTCTTGAGGGAAAAAAGCTAGCTTCTTTCACCAGGATTTCGTCAACGGTGCAGAACGCAATGGAAGAAGCGCTCGTCCGTATTCTGACTCCAAGACGTTCCATTGACATTCTGAGGGATGTGCATACTGCACAAGAACAAAAGAAGCCTTATGTGGTCGTTTTTGTTGGTGTCAACGGAGTTGGAAAATCTACTAATCTTGCCAAGGTGGCTTATTGGCTTCTTCAGCATAAAGTTAGTGTCATGATGGCCGCTTGTGATACATTTAGATCCGGAGCCGTTGAGCAGCTTAGAACTCATGCTCGTAGACTTCAGATCCCTATATTCGAGAAGGGCTACGAGAAAGATCCTGCAATTGTGGCTAAAGAAGCAATCCAAGAGGCATCCCGCAATGGATCTGAGGTCGTTCTTGTTGACACAGCTGGGAGAATGCAGGATAATGAACCACTCATGAGAGCTCTTTCAAAGCTTATCAACCTTAACAGTCCAGATCTAGTCTTGTTCGTCGGGGAGGCCCTCGTTGGGAATGATGCTGTCGATCAACTTTCAAAGTTCAATCAGAAACTAGCTGACCTCTCTACTTCACCCAATCCTAGACTGATCGACGGTATCTTGCTCACAAAATTCGATACAATTGATGACAAGGTTGGAGCAGCATTGTCCATGGTTTACATATCTGGAGCACCAGTTATGTTTGTCGGCTGTGGACAGTCATATACCGACCTCAAGAAACTCAATGTCAAATCGATCGTCAAAACGCTTATTAAATAAGAGCTAAGCCACACAGTCGTGTACCAACCTCAAGAAACTAAATGTCAAACCGATCGCCAAAATGCTTAGCAAACGAGTGCTCTTTACAGTACAAAGTTTGGGAGGCCATGGCGTTGGGTAGATGTATTAAATGGTGAAATGTTGTGCTTGTGTTTGTTTGCCCCCTATGACCATCCTTTTGCTATATGCTTAACTTAATTTTAAGTGTATGCACTCAGTAGGTGTAATGTTATCCTTTAGTTTGTTGGATTGTTGATTTCTTTGGCCTCTCTTCTTGTGTATTTGAGGTCATTGTTATTATTATTTTTGCTATTTTAATTCTTCGTACACCCCAAATAAGGAGAAGTACATGAATGAACCGAGAC

Coding sequence (CDS)

ATGTTAGAGCAGTTGTTGATATTCACTAGGGGTGGTTTAATTCTATGGACTTGTAAGGAGCTTGGAAATGCACTTAAAGGGTCTCCTATTGACACTTTAATCAGATCCTGTCTCTTAGAGGAGCGATCTGGTGCTGCATCTTATAATTATGATGCTCCAGGTGCTGCTTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTATTTGTTGCGGTGTATCAACGGATCCTTCATTTATTGTATGTGGATGATTTGCTTGCAATGGTGAAGCAGGGGTTTTCTGAGATTTATGATCCAAAGCGGATGGTCTATGATGATTTTGATGAAACTTTTAGGCAACTTAGAATGGAGGCTGAGGCTCGTGCTAGTGAGTTGAAAAGGTCAAAGCAGGTGGCGATGAAGCCAGTGAACAATGCCAGGAAGCAAGGGCAGGATCAAAAAACTGGATTTGGAGAAAACAAGAAAAGCAACAGTGGTTTGGCAGATGTTGGTGATGCTGAGCGTACAAAAAGTCATCAGTTGGAGAATGGTTACTCCAATGGCAATCGTGTTATAGAATCTAAACTAACCGCTGTTGTTAATGGAAAAGAAAATGCAAGTTCCAATGTTGGGGCTTTTGATGTAAATAAACTTCAGAAGCTTAGGTCTAAAGGTGGGAAGAAAACTGATACTGTTGTTAATAAGGGCTCCAAGGAAGAGTCAAAGAAAAAGGTAACAAAGAAGAATAGAGTTTGGGATGATAAACCTGTTGAGGCAAAATTGGACTTCACAGATCCTGTGGGTGAGAATGGGGAGAACAATATTGAGGTTTTGGCAGCAGACCAGGGGCAAAGTATGATGGACAAAGAAGAGGTCTTTAGTAGTGACAGTGAGGATGAAGAAGATGAGGAAGGTAGCCAGGGAAGTAAGCTCGAGGCGAAGAAGAAAGGATGGTTTTCATCTATGTTCCAGAGTATTTCAGGCAAGGCAAGTTTGGATAAGGCAGATCTGGAACCAGCTCTGAAAGCTCTCAAGGACAGGCTTATGACAAAGAATGTGGCTGAGGAGATAGCTGAGAAACTTTGTGAATCGGTAGCGGCTAGTCTTGAGGGAAAAAAGCTAGCTTCTTTCACCAGGATTTCGTCAACGGTGCAGAACGCAATGGAAGAAGCGCTCGTCCGTATTCTGACTCCAAGACGTTCCATTGACATTCTGAGGGATGTGCATACTGCACAAGAACAAAAGAAGCCTTATGTGGTCGTTTTTGTTGGTGTCAACGGAGTTGGAAAATCTACTAATCTTGCCAAGGTGGCTTATTGGCTTCTTCAGCATAAAGTTAGTGTCATGATGGCCGCTTGTGATACATTTAGATCCGGAGCCGTTGAGCAGCTTAGAACTCATGCTCGTAGACTTCAGATCCCTATATTCGAGAAGGGCTACGAGAAAGATCCTGCAATTGTGGCTAAAGAAGCAATCCAAGAGGCATCCCGCAATGGATCTGAGGTCGTTCTTGTTGACACAGCTGGGAGAATGCAGGATAATGAACCACTCATGAGAGCTCTTTCAAAGCTTATCAACCTTAACAGTCCAGATCTAGTCTTGTTCGTCGGGGAGGCCCTCGTTGGGAATGATGCTGTCGATCAACTTTCAAAGTTCAATCAGAAACTAGCTGACCTCTCTACTTCACCCAATCCTAGACTGATCGACGGTATCTTGCTCACAAAATTCGATACAATTGATGACAAGGTTGGAGCAGCATTGTCCATGGTTTACATATCTGGAGCACCAGTTATGTTTGTCGGCTGTGGACAGTCATATACCGACCTCAAGAAACTCAATGTCAAATCGATCGTCAAAACGCTTATTAAATAA

Protein sequence

MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYDDFDETFRQLRMEAEARASELKRSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLADVGDAERTKSHQLENGYSNGNRVIESKLTAVVNGKENASSNVGAFDVNKLQKLRSKGGKKTDTVVNKGSKEESKKKVTKKNRVWDDKPVEAKLDFTDPVGENGENNIEVLAADQGQSMMDKEEVFSSDSEDEEDEEGSQGSKLEAKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK

Homology

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BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match: Q9U5L1 (Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster OX=7227 GN=SrpRalpha PE=1 SV=2)

HSP 1 Score: 437.2 bits (1123), Expect = 3.1e-121
Identity = 285/643 (44.32%), Postives = 396/643 (61.59%), Query Frame = 0


Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
           ML+ ++IFT+GG++LW     GN+   S I++LIR  +LEER+  A Y Y+    A   K
Sbjct: 1   MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLAVQFK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYD-DFDETFRQLRME 120
               NEL LV+ A++Q+++ L Y+D  LA ++  F E Y   R+  D DFD  +R++   
Sbjct: 61  --LDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 120

Query: 121 A-EARASELKRSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLADVGDAERTKSHQLEN 180
           A EA A ++K  K   M+  N ++K  +   +   ++KK      ++ +A      Q   
Sbjct: 121 AEEASAKQVKAPK--TMRSYNESQKSKKTVASMIQDDKKPVEKRVNIQEAPPPSKSQ--- 180

Query: 181 GYSNGNRVIESKLTAVVNGKENASSNVGAFDVNKLQKLRSK--GGKKTDTVVNKGSKEES 240
                                   S +    + K +KLR K    KKT    +K SK E 
Sbjct: 181 -----------------PSSPPTGSPMDKIIMEKRRKLREKLTPTKKTSPSDSKSSKPE- 240

Query: 241 KKKVTKKNRVWD---DKPVEAKLDFT-DPVGENGENNIEVLAADQGQSMMDKEEVFSSDS 300
             K  KK RVWD   +    A LD + D   +    NI        Q ++   +V S D 
Sbjct: 241 --KAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESEDE 300

Query: 301 EDEED--EEGSQGSKLEAK--KKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNV 360
            D ED   EG    ++++K  K+G   S F+ I G  ++  ADL+PAL+ ++D L++KNV
Sbjct: 301 ADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISKNV 360

Query: 361 AEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQE 420
           A EIA KLC+SVAASL+GK++ +F  I+S V+ A+ E+LVRIL+P+R IDI+RD   ++ 
Sbjct: 361 ASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALESKR 420

Query: 421 QKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-- 480
             +PY ++F GVNGVGKSTNLAK+ +WL+++  +V++AACDTFR+GAVEQLRTH R L  
Sbjct: 421 NGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNA 480

Query: 481 -----------QIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQDNEPLMRA 540
                       + ++EKGY KD A +A EAI+ A     +VVLVDTAGRMQDNEPLMR+
Sbjct: 481 LHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLMRS 540

Query: 541 LSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTID 600
           LSKLI +N+PDLVLFVGEALVGN+AVDQL KFNQ LAD S++ NP +IDGI+LTKFDTID
Sbjct: 541 LSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDTID 600

Query: 601 DKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
           DKVGAA+SM YI+G P++FVG GQ+Y DLK +NV ++V +L+K
Sbjct: 601 DKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLMK 614

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BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match: Q54ZR7 (Signal recognition particle receptor subunit alpha OS=Dictyostelium discoideum OX=44689 GN=srpra PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 9.1e-121
Identity = 277/644 (43.01%), Postives = 394/644 (61.18%), Query Frame = 0


Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
           ML+   I T+GG++LW+ KE    +KGSPI++LI+  LLEERS   S+  D    +Y+LK
Sbjct: 1   MLDSFTILTKGGIVLWS-KEFAK-IKGSPINSLIKKVLLEERSAETSFQID----SYSLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIY---------DPKRMVYDDFDE 120
           WTF NE  L+FV VYQ+I  LLY+++LL  VK+ F ++Y             ++ D F E
Sbjct: 61  WTFSNEFDLIFVVVYQKIFTLLYIEELLTTVKKRFIKMYKDLLLKLKESSDFIIVDKFQE 120

Query: 121 TFRQLRMEAEARASELKRSKQVAMKPVNN--------------ARKQGQDQKTGFGENKK 180
              ++ +E     S+L+++   A K   +              A K+G+ +K    E +K
Sbjct: 121 FNFEVILEDVENRSKLQQTSNSAPKKYEDTDKGKLVKDQKNERAIKEGRVEKVKRKEQEK 180

Query: 181 SNSGLADVGDAERTKSHQLE--NGYSNGNRVIESKLTAVVNGKENASSNVGAFDVNKLQK 240
                     AER K ++    N  S+ +   +S  ++  + +EN S+         + +
Sbjct: 181 KEK-------AERRKQNKANNINDISSDDDSDDSDSSSGSDSEEN-SNGATKNQQTDVAR 240

Query: 241 LRSKGGKKTDTVVNKGSKEESKKKVTKKNRVWDDKPVEAKLDFTDPVGENGENNIEVLAA 300
           + + G KK    V     +++     KK R W+D  +  K    + +  +  +N   +  
Sbjct: 241 IENSGYKKK---VKDTPDKQASSSTGKKARTWEDGKLSKK--ELEALNRSDNSNGTEIVR 300

Query: 301 DQGQSMMDKEEVFSSDSEDEEDEEGSQGSKLEAKKKGWFSSMFQSISGKASLDKADLEPA 360
           ++ Q      +V SSD +DEE          EAK    F   F  ++G   +DK DLEP 
Sbjct: 301 EKIQKFNIDMDVSSSDDDDEE----------EAKPVSGFMKYFNVLTGNRVIDKQDLEPI 360

Query: 361 LKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRR 420
           L   K  L  KNVA ++A+K+ +S+   LEGKKLA+F  ++S V+  ME+ + RILTP+R
Sbjct: 361 LADFKLHLTKKNVAPDVADKIVQSIGTGLEGKKLATFQGVTSVVKQQMEDTITRILTPKR 420

Query: 421 SIDILRDVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA 480
           +IDILR+V  A + K+PY +VF GVNGVGKSTNLAKV YWL  +    M+AACDTFRSGA
Sbjct: 421 NIDILREVQ-AVKGKRPYSIVFSGVNGVGKSTNLAKVCYWLTANGYKCMLAACDTFRSGA 480

Query: 481 VEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQDNEPLMRA 540
           +EQL+THA RL + +FE+GY KD A VA++AI  A   G +VVL+DT GRMQ+NEPLM+A
Sbjct: 481 IEQLKTHADRLNVHLFERGYSKDAASVAQDAIAFAKDTGYDVVLIDTTGRMQNNEPLMKA 540

Query: 541 LSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADL--STSPNPRLIDGILLTKFDT 600
           LSKL+N N+ DLVLFVGEALVGND VDQL+KF++ L+ L  +T  + R IDGI+LTKFDT
Sbjct: 541 LSKLVNQNNVDLVLFVGEALVGNDGVDQLTKFDKSLSLLANTTQTHIRTIDGIILTKFDT 600

Query: 601 IDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLI 618
           IDDKVGAA+SMVY +G P++F+G GQ+YTDLK++N+KS+VK+L+
Sbjct: 601 IDDKVGAAISMVYSTGHPILFLGTGQNYTDLKRMNIKSVVKSLL 614

[Close]

BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match: Q9DBG7 (Signal recognition particle receptor subunit alpha OS=Mus musculus OX=10090 GN=Srpra PE=1 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.3e-114
Identity = 271/650 (41.69%), Postives = 378/650 (58.15%), Query Frame = 0


Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
           ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  S+ ++    A TLK
Sbjct: 1   MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYD---------DFDE 120
           +   N+  LVFV  +Q+IL L YVD L+  V + F + Y  +              DF  
Sbjct: 61  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 120

Query: 121 TFRQLRMEAEARASELKRSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLADVGDAERT 180
            F +L  EAE  +     +     +    A+K  +      GE  K  +      + +R 
Sbjct: 121 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKTKEKA----KNNKKRG 180

Query: 181 KSHQLENGYSNGNRVIESKLTAVVNGKENASSNVGAFDVNKLQKLRSKGGKKTDTVVNKG 240
              +  +G    ++   ++ + +  G EN   +       K ++   K GK  D      
Sbjct: 181 AKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQKHGKGLDKSSKST 240

Query: 241 SKEESKKKVTKKNRVWDDKPVEAK--LDFTDPVGEN------GENNIEVLAADQGQSMMD 300
             +  K+K  K  RVW+      K  LD++ P           E+   +     G  + D
Sbjct: 241 KSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLIRGTGPGGQLQD 300

Query: 301 KEEVFSSDSEDEEDEEGSQGSKLEAKK--KGWFSSMFQSISGKASLDKADLEPALKALKD 360
                  D    +DE  +Q +K  A K   G    M + + G  SL + D+E  L  ++D
Sbjct: 301 ------LDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRD 360

Query: 361 RLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSIDILR 420
            L+ KNVA +IA +LCESVA  LEGK + +F+ ++STV+ A++E+LV+IL P+R +D+LR
Sbjct: 361 HLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLR 420

Query: 421 DVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT 480
           D+  AQ +++PYVV F GVNGVGKSTNLAK+++WLL++  SV++AACDTFR+GAVEQLRT
Sbjct: 421 DIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRT 480

Query: 481 HARRL-------------QIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQD 540
           H RRL              + +FEKGY KD A +A EAI  A   G +VVLVDTAGRMQD
Sbjct: 481 HTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQD 540

Query: 541 NEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILL 600
           N PLM AL+KLI +N+PDLVLFVGEALVGN+AVDQL KFN+ LAD S +  PRLIDGI+L
Sbjct: 541 NAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVL 600

Query: 601 TKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
           TKFDTIDDKVGAA+SM YI+  P++FVG GQ+Y DL+ LN K++V  L+K
Sbjct: 601 TKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 635

[Close]

BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match: Q3MHE8 (Signal recognition particle receptor subunit alpha OS=Bos taurus OX=9913 GN=SRPRA PE=2 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 8.2e-114
Identity = 272/660 (41.21%), Postives = 382/660 (57.88%), Query Frame = 0


Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
           ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  S+ ++    A TLK
Sbjct: 1   MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYD---------DFDE 120
           +   N+  LVFV  +Q+IL L YVD L+  V + F + Y  +              DF  
Sbjct: 61  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 120

Query: 121 TFRQLRMEAEARASELK--------RSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLA 180
            F +L  EAE  +S+++           + A KPV +  +   ++     +N K N G  
Sbjct: 121 DFLRLLREAE-ESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAK 180

Query: 181 DVGDAERTKSHQLENGYSNGNRVIESKLTAVVNGKENASSNVGAFDV-NKLQKLRSKGGK 240
             G           +G    ++   ++ + +  G EN         +  K ++   K G+
Sbjct: 181 KEG----------SDGPLATSKAAPAEKSGLPVGPENGEELSKEEQIRRKREEFIQKHGR 240

Query: 241 KTDTVVNKGSKEESKKKVTKKNRVW--DDKPVEAKLDFTDPVGENG------ENNIEVLA 300
             +        +  K+K  K  RVW       +  LD++ P           E+   +  
Sbjct: 241 GMEKSSKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPTTNGAPEAAPPEDINLIRG 300

Query: 301 ADQGQSMMDKEEVFSSDSEDEEDEEGSQGSKLEAKKKGWFSSMF---QSISGKASLDKAD 360
              G+ + D       D    +DE  +Q S   +  KG    MF   + + G  SL + D
Sbjct: 301 TGPGRQLQD------LDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLTRED 360

Query: 361 LEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRIL 420
           +E  L  ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++STV+ A++E+LV+IL
Sbjct: 361 MESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQIL 420

Query: 421 TPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 480
            P+R +D+LRD+  AQ  ++PYVV F GVNGVGKSTNLAK+++WLL++  SV++AACDTF
Sbjct: 421 QPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTF 480

Query: 481 RSGAVEQLRTHARRL-------------QIPIFEKGYEKDPAIVAKEAIQEASRNGSEVV 540
           R+GAVEQLRTH RRL              + +FEKGY KD A +A EAI  A   G +VV
Sbjct: 481 RAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVV 540

Query: 541 LVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSP 600
           LVDTAGRMQDN PLM AL+KLI +N+PDLVLFVGEALVGN+AVDQL KFN+ LAD S + 
Sbjct: 541 LVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQ 600

Query: 601 NPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
            PRLIDGI+LTKFDTIDDKVGAA+SM YI+  P++FVG GQ+Y DL+ LN K++V  L+K
Sbjct: 601 TPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 638

[Close]

BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot
Match: P08240 (Signal recognition particle receptor subunit alpha OS=Homo sapiens OX=9606 GN=SRPRA PE=1 SV=2)

HSP 1 Score: 410.6 bits (1054), Expect = 3.1e-113
Identity = 275/653 (42.11%), Postives = 388/653 (59.42%), Query Frame = 0


Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
           ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  S+ ++    A TLK
Sbjct: 1   MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYD---------DFDE 120
           +   N+  LVFV  +Q+IL L YVD L+  V + F + Y  +              DF  
Sbjct: 61  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 120

Query: 121 TFRQLRMEAEARASELKRSKQVAMKPVNNARKQGQDQKTGFGENKKSNSGLADVGDAERT 180
            F +L  EAE  +     +     +    A+K  +      GE  K  +  +    A++ 
Sbjct: 121 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 180

Query: 181 KSHQLENGYSNGNRVIESKLTAVVNGKEN-ASSNVGAFDVNKLQKLRSKGGKKTDTVVNK 240
            S    +G    ++ + ++ + +  G EN    +       K ++   K G+  +   NK
Sbjct: 181 GS----DGPLATSKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEK-SNK 240

Query: 241 GSKEES-KKKVTKKNRVWDDKPVEAK--LDFTDPVGENG------ENNIEVLAADQGQSM 300
            +K ++ K+K  K  RVW+      K  LD++ P   NG        +I ++        
Sbjct: 241 STKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPT-TNGTPEAALSEDINLIRGTGSGGQ 300

Query: 301 MDKEEVFSSDSEDEEDEEGSQGSKLEAKKKGWFSSMF---QSISGKASLDKADLEPALKA 360
           +   +  SSD     DE  +Q S   +  KG    MF   + + G  SL + D+E  L  
Sbjct: 301 LQDLDCSSSD-----DEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDK 360

Query: 361 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSID 420
           ++D L+ KNVA +IA +LCESVA  LEGK + +F+ ++STV+ A++E+LV+IL P+R +D
Sbjct: 361 MRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVD 420

Query: 421 ILRDVHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 480
           +LRD+  AQ +++PYVV F GVNGVGKSTNLAK+++WLL++  SV++AACDTFR+GAVEQ
Sbjct: 421 MLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQ 480

Query: 481 LRTHARRL-------------QIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGR 540
           LRTH RRL              + +FEKGY KD A +A EAI  A   G +VVLVDTAGR
Sbjct: 481 LRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGR 540

Query: 541 MQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDG 600
           MQDN PLM AL+KLI +N+PDLVLFVGEALVGN+AVDQL KFN+ LAD S +  PRLIDG
Sbjct: 541 MQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDG 600

Query: 601 ILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
           I+LTKFDTIDDKVGAA+SM YI+  P++FVG GQ+Y DL+ LN K++V  L+K
Sbjct: 601 IVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 637

[Close]

BLAST of CmaCh12G008550 vs. TAIR 10
Match: AT4G30600.1 (signal recognition particle receptor alpha subunit family protein )

HSP 1 Score: 921.0 bits (2379), Expect = 5.1e-268
Identity = 505/636 (79.40%), Postives = 557/636 (87.58%), Query Frame = 0


Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60
           MLEQLLIFTRGGLILWTCKE+GNALKGSPIDTLIRSCLLEERSGA S+NYDAPGAAYTLK
Sbjct: 1   MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYDDFDETFRQLRMEA 120
           WTFHN+LGLVFVAVYQRILHLLYVDDLL+MVKQ FSE+YDPKRM YDDFDETFRQLR+EA
Sbjct: 61  WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMAYDDFDETFRQLRIEA 120

Query: 121 EARASELKRSKQVAMKPVNNARKQGQDQKTGF-GENKKSNS---GLADVGD-AERTKSHQ 180
           EARA EL+++KQV  KPV + +KQGQ  K G  G NK+ +S      D GD   + K   
Sbjct: 121 EARAEELRKTKQVG-KPVTSVKKQGQVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAKVST 180

Query: 181 LENGYSNGNRVIE---SKLTAVVNGKENASSNVGAFDVNKLQKLRSK------GGKKTDT 240
           L NG+SNGN  +E    +   + NGKEN SSNV A D++KLQKLRSK      G +KTD+
Sbjct: 181 LTNGHSNGNHQMEDDSQETNDLANGKENTSSNV-AVDLSKLQKLRSKGVRGRGGVRKTDS 240

Query: 241 VVNKGSK-EESKKKVTKKNRVWDD-KPVEAKLDFTDPVGENGEN-NIEVLAADQGQSMMD 300
           + NK SK  E  KK TKKNRVWDD  P ++KLDFTD + ENG N +++++AADQG+SMMD
Sbjct: 241 IGNKSSKVAEPAKKATKKNRVWDDAAPKQSKLDFTDSIDENGNNDHVDIVAADQGESMMD 300

Query: 301 KEEVFSSDSEDEEDEE-GSQGSKLEAKKKGWFSSMFQSISGKASLDKADLEPALKALKDR 360
           KEEVFSSDSE E+D+E GS     +AKKKGWFSS+FQSI+GKA+L++ DL PALKALK+R
Sbjct: 301 KEEVFSSDSESEDDDEPGSDEKPAQAKKKGWFSSVFQSITGKANLERTDLGPALKALKER 360

Query: 361 LMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQNAMEEALVRILTPRRSIDILRD 420
           LMTKNVAEEIAEKLCESV ASLEGKKL+SFTRISSTVQ AME+ALVRILTPRRSIDILRD
Sbjct: 361 LMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILRD 420

Query: 421 VHTAQEQKKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH 480
           VH A+EQ+KPYVVVFVGVNGVGKSTNLAKVAYWL QHKVSVMMAACDTFRSGAVEQLRTH
Sbjct: 421 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTH 480

Query: 481 ARRLQIPIFEKGYEKDPAIVAKEAIQEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINL 540
           ARRLQIPIFEKGYEKDPA+VAKEAIQEA+RNGS+VVLVDTAGRMQDNEPLMRALSKLINL
Sbjct: 481 ARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINL 540

Query: 541 NSPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAAL 600
           N PDLVLFVGEALVGNDAVDQLSKFNQKL+DLSTS NPRLIDGILLTKFDTIDDKVGAAL
Sbjct: 541 NQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAAL 600

Query: 601 SMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLIK 619
           SMVYISG+PVMFVGCGQSYTDLKKLNVK+IVKTL+K
Sbjct: 601 SMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLLK 634

[Close]

BLAST of CmaCh12G008550 vs. TAIR 10
Match: AT1G48900.1 (Signal recognition particle, SRP54 subunit protein )

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-28
Identity = 82/310 (26.45%), Postives = 151/310 (48.71%), Query Frame = 0


Query: 308 AKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 367
           A+  G  +   Q +S    +D+  L   L  +   L+  +V+  + +++  ++   +  +
Sbjct: 4   AELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLE 63

Query: 368 KLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKST 427
            LA+       ++ A+   L ++L P +          A ++ K  VV+FVG+ G GK+T
Sbjct: 64  DLAAGHNKRRIIEQAIFSELCKMLDPGKPA-------FAPKKAKASVVMFVGLQGAGKTT 123

Query: 428 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAI 487
              K AY+  +      +   DTFR+GA +QL+ +A + +IP +    E DP  +A E +
Sbjct: 124 TCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGV 183

Query: 488 QEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKF 547
               +   ++++VDT+GR +    L   + ++     PDLV+FV ++ +G  A DQ   F
Sbjct: 184 DTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAF 243

Query: 548 NQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKL 607
            Q +A          +  +++TK D    K G ALS V  + +PV+F+G G+   + +  
Sbjct: 244 KQSVA----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF 295

Query: 608 NVKSIVKTLI 618
           +VK  V  L+
Sbjct: 304 DVKPFVSRLL 295

[Close]

BLAST of CmaCh12G008550 vs. TAIR 10
Match: AT1G48900.2 (Signal recognition particle, SRP54 subunit protein )

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-28
Identity = 82/310 (26.45%), Postives = 151/310 (48.71%), Query Frame = 0


Query: 308 AKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 367
           A+  G  +   Q +S    +D+  L   L  +   L+  +V+  + +++  ++   +  +
Sbjct: 4   AELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLE 63

Query: 368 KLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKST 427
            LA+       ++ A+   L ++L P +          A ++ K  VV+FVG+ G GK+T
Sbjct: 64  DLAAGHNKRRIIEQAIFSELCKMLDPGKPA-------FAPKKAKASVVMFVGLQGAGKTT 123

Query: 428 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAI 487
              K AY+  +      +   DTFR+GA +QL+ +A + +IP +    E DP  +A E +
Sbjct: 124 TCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGV 183

Query: 488 QEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKF 547
               +   ++++VDT+GR +    L   + ++     PDLV+FV ++ +G  A DQ   F
Sbjct: 184 DTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAF 243

Query: 548 NQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKL 607
            Q +A          +  +++TK D    K G ALS V  + +PV+F+G G+   + +  
Sbjct: 244 KQSVA----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF 295

Query: 608 NVKSIVKTLI 618
           +VK  V  L+
Sbjct: 304 DVKPFVSRLL 295

[Close]

BLAST of CmaCh12G008550 vs. TAIR 10
Match: AT1G15310.1 (signal recognition particle 54 kDa subunit )

HSP 1 Score: 124.4 bits (311), Expect = 3.2e-28
Identity = 82/310 (26.45%), Postives = 152/310 (49.03%), Query Frame = 0


Query: 308 AKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 367
           A+  G  +   Q ++    +D+  L   L  +   L+  +V+  + EK+  ++   +   
Sbjct: 4   AELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLD 63

Query: 368 KLASFTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKKPYVVVFVGVNGVGKST 427
            LA+       ++ A+ + L R+L P +          A ++ KP VV+FVG+ G GK+T
Sbjct: 64  DLAAGHNKRLIIEQAIFKELCRMLDPGKPA-------FAPKKAKPSVVMFVGLQGAGKTT 123

Query: 428 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAI 487
              K AY+  +      +   DTFR+GA +QL+ +A + +IP +    E DP  +A E +
Sbjct: 124 TCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGV 183

Query: 488 QEASRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKF 547
               +   ++++VDT+GR +    L   + ++     PDLV+FV ++ +G  A +Q   F
Sbjct: 184 DRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAF 243

Query: 548 NQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKL 607
            + ++          +  +++TK D    K G ALS V  + +PV+F+G G+   + +  
Sbjct: 244 KETVS----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF 295

Query: 608 NVKSIVKTLI 618
           +VK  V  L+
Sbjct: 304 DVKPFVSRLL 295

[Close]

BLAST of CmaCh12G008550 vs. TAIR 10
Match: AT5G03940.1 (chloroplast signal recognition particle 54 kDa subunit )

HSP 1 Score: 123.6 bits (309), Expect = 5.4e-28
Identity = 82/295 (27.80%), Postives = 153/295 (51.86%), Query Frame = 0


Query: 312 GWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 371
           G   + +  + G+  L K ++   ++ ++  L+  +V+  +  +  +SV+    G  +  
Sbjct: 83  GGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIR 142

Query: 372 FTRISSTVQNAMEEALVRILTPRRSIDILRDVHTAQEQKK-PYVVVFVGVNGVGKSTNLA 431
             +    +   + + LV+++          +V   Q  K  P V++  G+ GVGK+T  A
Sbjct: 143 GVKPDQQLVKIVHDELVKLMG--------GEVSELQFAKSGPTVILLAGLQGVGKTTVCA 202

Query: 432 KVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEA 491
           K+A +L +   S M+ A D +R  A++QL     ++ +P++  G +  PA +AK+ ++EA
Sbjct: 203 KLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEA 262

Query: 492 SRNGSEVVLVDTAGRMQDNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQK 551
            +N  +VV++DTAGR+Q ++ +M  L  +    +P  VL V +A+ G +A   ++ FN +
Sbjct: 263 KKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVE 322

Query: 552 LADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLK 606
           +           I G +LTK D  D + GAALS+  +SG P+  VG G+   DL+
Sbjct: 323 IG----------ITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLE 358

The following BLAST results are available for this feature:

BLAST of CmaCh12G008550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9U5L1	3.1e-121	44.32	Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanog...	[more]
Q54ZR7	9.1e-121	43.01	Signal recognition particle receptor subunit alpha OS=Dictyostelium discoideum O...	[more]
Q9DBG7	1.3e-114	41.69	Signal recognition particle receptor subunit alpha OS=Mus musculus OX=10090 GN=S...	[more]
Q3MHE8	8.2e-114	41.21	Signal recognition particle receptor subunit alpha OS=Bos taurus OX=9913 GN=SRPR...	[more]
P08240	3.1e-113	42.11	Signal recognition particle receptor subunit alpha OS=Homo sapiens OX=9606 GN=SR...	[more]

BLAST of CmaCh12G008550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30600.1	5.1e-268	79.40	signal recognition particle receptor alpha subunit family protein	[more]
AT1G48900.1	1.4e-28	26.45	Signal recognition particle, SRP54 subunit protein	[more]
AT1G48900.2	1.4e-28	26.45	Signal recognition particle, SRP54 subunit protein	[more]
AT1G15310.1	3.2e-28	26.45	signal recognition particle 54 kDa subunit	[more]
AT5G03940.1	5.4e-28	27.80	chloroplast signal recognition particle 54 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013822	Signal recognition particle SRP54, helical bundle	SMART	SM00963	SRP54_N_2	coord: 309..391 e-value: 5.7E-6 score: 35.8
IPR013822	Signal recognition particle SRP54, helical bundle	PFAM	PF02881	SRP54_N	coord: 314..382 e-value: 5.0E-9 score: 36.2
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 411..556 e-value: 8.8E-6 score: 35.2
IPR000897	Signal recognition particle, SRP54 subunit, GTPase domain	SMART	SM00962	SRP54_3	coord: 412..618 e-value: 1.0E-83 score: 294.1
IPR000897	Signal recognition particle, SRP54 subunit, GTPase domain	PFAM	PF00448	SRP54	coord: 413..617 e-value: 5.4E-55 score: 186.1
IPR000897	Signal recognition particle, SRP54 subunit, GTPase domain	PROSITE	PS00300	SRP54	coord: 591..604
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 396..618 e-value: 2.4E-94 score: 317.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 409..616
None	No IPR available	GENE3D	3.30.450.60		coord: 1..125 e-value: 9.5E-39 score: 134.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 277..307
None	No IPR available	PANTHER	PTHR43134	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	coord: 1..618
None	No IPR available	PANTHER	PTHR43134:SF10	BNAA01G06530D PROTEIN	coord: 1..618
None	No IPR available	CDD	cd14826	SR_alpha_SRX	coord: 3..116 e-value: 2.70264E-45 score: 154.668
None	No IPR available	CDD	cd17876	SRalpha_C	coord: 425..616 e-value: 5.73226E-134 score: 388.125
IPR042101	Signal recognition particle SRP54, N-terminal domain superfamily	GENE3D	1.20.120.140		coord: 280..394 e-value: 2.6E-24 score: 87.4
IPR007222	Signal recognition particle receptor, alpha subunit, N-terminal	PFAM	PF04086	SRP-alpha_N	coord: 28..297 e-value: 5.5E-70 score: 236.6
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..123
IPR036225	SRP/SRP receptor, N-terminal	SUPERFAMILY	47364	Domain of the SRP/SRP receptor G-proteins	coord: 311..393

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008550.1	CmaCh12G008550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005785	signal recognition particle receptor complex
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005047	signal recognition particle binding