CmaCh12G008530 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008530
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	UPF0057 membrane protein
Location	Cma_Chr12: 6317397 .. 6318490 (-)
RNA-Seq Expression	CmaCh12G008530
Synteny	CmaCh12G008530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCCTTACGAATCAAAATCAAGCACTTCCACAGCTCTCTCTCTCTCTCATTTCTCTCCAAGATCGAAAATGGCGAACAGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTAATCTTAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCGTCTCTCTGTAATTTCCTTCGCTAATCTGAACTTACGATTACCTAAAACAGCCGACGAGACGATCTGATCTAAAACAGACGAAATTAGGTTTCAGTTTCGGTTTAATTTTGTGTGTAATTGCAGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATCTACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAGAACAAGTTTGAATCTCTTCTTCACTCTGTTTTAATTTCTCGAATAAGGTTTATTAACTGTTTGGTTGCTTTTGGATATGATTTGATTTGATTTACATAGATTTTCTGAGGCTTGCTCTTACTGATTTGGAGTTTATTAGGGAGTATTCGGATCATTTGTTCAAGTGCTTAGAAAATTGAAATATCAATGGCGTTTGGTTTTGAGTTAAAGAGATTGAAGTGTGTTCTTATGTAGAAAGAAATATAGGTATTAGCCATGTATTGTAAGTGCAACAAAGATCATTAAAGAAACAAGCAAATATCATTCATCTAAGTTCTAGTAATAAACTAGACTACTATTATATGCACATGACCCATTAACACTTGTTGTAACTTCTAGTGATGTAGATCGACCTCAACGTGGAAGTTGTTCGAGAAGATGACCACATATGATACACGAGCTTGTCGTTCATTTTTTTTTTTCTTTTGTAGAAAATAAGAAATGTTTTATTATTTTGAAATAATTGTTGATGTGTTATCTTACAATACTTTGTACTAATACTTCGTCTGTTCTTATCTTTTTTCCATACTCAAAATTGGAAGAAAAGAATATCGAGTAAATAAATGAATATCACCA

mRNA sequence

ACTCCTTACGAATCAAAATCAAGCACTTCCACAGCTCTCTCTCTCTCTCATTTCTCTCCAAGATCGAAAATGGCGAACAGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATCTACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAGAACAATGATGTAGATCGACCTCAACGTGGAAGTTGTTCGAGAAGATGACCACATATGATACACGAGCTTGTCGTTCATTTTTTTTTTTCTTTTGTAGAAAATAAGAAATGTTTTATTATTTTGAAATAATTGTTGATGTGTTATCTTACAATACTTTGTACTAATACTTCGTCTGTTCTTATCTTTTTTCCATACTCAAAATTGGAAGAAAAGAATATCGAGTAAATAAATGAATATCACCA

Coding sequence (CDS)

ATGGCGAACAGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATCTACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAG

Protein sequence

MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDRDHFFDEYRRPLYSPVPTV

Homology

[Close]

BLAST of CmaCh12G008530 vs. ExPASy Swiss-Prot
Match: O82232 (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-26
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+ CE+ CEI IAIL+PP+GVCL+HGCCTVEF +CLILT LGY+PGIIYA+Y+I F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DHFFDEYRRPLY 73
          D +FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of CmaCh12G008530 vs. ExPASy Swiss-Prot
Match: Q9SUI0 (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.9e-26
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DHFFDEYRRPLYS 74
          + +FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of CmaCh12G008530 vs. ExPASy Swiss-Prot
Match: Q9M095 (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.1e-21
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+  E+FCEILIAIL+PPLGVCLK GCCTVEF +CL+LT+LGYIPGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

[Close]

BLAST of CmaCh12G008530 vs. ExPASy Swiss-Prot
Match: Q9LRI7 (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-17
Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 2  ANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDRD 61
          + RC  F EIL+AI++PPLGV L+ GCC++EFC+CL+LT+LGY+PGIIYA+Y +V +D D
Sbjct: 3  SGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSD 62

Query: 62 HFFDEY 68
           +  EY
Sbjct: 63 QYQREY 68

[Close]

BLAST of CmaCh12G008530 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-10
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 8  FCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALY 54
          F +I+IAIL+PPLGV L+ G C VEF +CL+LTLLGYIPGIIYA+Y
Sbjct: 6  FVDIIIAILLPPLGVFLRFG-CGVEFWICLVLTLLGYIPGIIYAIY 50

[Close]

BLAST of CmaCh12G008530 vs. TAIR 10
Match: AT4G28088.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 131.0 bits (328), Expect = 4.3e-31
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MAN CEI CEI+IAILIPPLGVCL+HGCCT EF +CLILTLLGY+PGIIYALY+IV+VDR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DHFFDEYRRPLY 73
          D FFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of CmaCh12G008530 vs. TAIR 10
Match: AT2G24040.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-27
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+ CE+ CEI IAIL+PP+GVCL+HGCCTVEF +CLILT LGY+PGIIYA+Y+I F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DHFFDEYRRPLY 73
          D +FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of CmaCh12G008530 vs. TAIR 10
Match: AT4G30660.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 117.5 bits (293), Expect = 4.9e-27
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DHFFDEYRRPLYS 74
          + +FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of CmaCh12G008530 vs. TAIR 10
Match: AT4G30660.2 (Low temperature and salt responsive protein family )

HSP 1 Score: 117.5 bits (293), Expect = 4.9e-27
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DHFFDEYRRPLYS 74
          + +FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of CmaCh12G008530 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 101.3 bits (251), Expect = 3.6e-22
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+  E+FCEILIAIL+PPLGVCLK GCCTVEF +CL+LT+LGYIPGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

The following BLAST results are available for this feature:

BLAST of CmaCh12G008530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82232	2.4e-26	72.22	UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 ...	[more]
Q9SUI0	6.9e-26	69.86	UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 ...	[more]
Q9M095	5.1e-21	77.05	UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 ...	[more]
Q9LRI7	3.4e-17	59.09	Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 S...	[more]
Q9ZNQ7	5.3e-10	71.74	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]

BLAST of CmaCh12G008530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28088.1	4.3e-31	83.33	Low temperature and salt responsive protein family	[more]
AT2G24040.1	1.7e-27	72.22	Low temperature and salt responsive protein family	[more]
AT4G30660.1	4.9e-27	69.86	Low temperature and salt responsive protein family	[more]
AT4G30660.2	4.9e-27	69.86	Low temperature and salt responsive protein family	[more]
AT4G30650.1	3.6e-22	77.05	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 9..56 e-value: 8.4E-17 score: 61.1
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..73
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 12..27
None	No IPR available	PANTHER	PTHR21659:SF93	BNAA03G50460D PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008530.1	CmaCh12G008530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane