CmaCh12G001610 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G001610
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionMethyltransferase
LocationCma_Chr12: 718348 .. 721419 (+)
RNA-Seq ExpressionCmaCh12G001610
SyntenyCmaCh12G001610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCTTAGTTCTTAGTTATTACTAAACTTAAGTGAAGAACATTTAGTGATTATGCTAATCTTAGTTGTTTCTTCATTTGGTTTCAAGAGTTTTGGTTTGAGATGTTTATGGGGGCAAGGATTTGTTAGGGTGTTCATAACTTGTCTACGAAAGATGGAACTGAAAAGGGAGATTTGGACGTGGAAGGGGATGATCATATGTTTATAAGTAAGGAATAATCTCCACTGGTATGAGGCTTTTGGGAAACCATAAGCAAAGTCATGAGAGCTTATACTCAAAGTGGACAATATCATATACTATTGTGGAGGTTCGTGATTCCCAATGTGATATCAGAGTCATGCCCTTAATTTAGCCATATCAATAAGATCCTCAAATGTCGAACAAAGGAATTGGGAGCCTCGAAGGTGTAGTAAAAAGTGACTCAAGTGTCGAATGAAAGGTGTACTTTGTTCGAAGGCTCCAGAGAAAGGAGTTGAGCCTCAATCAAAGGGAGCCTGGTCGAGGGCTCCATAGGCCTCAGGGGAGGCTCTATTGTATACTTTCTTCGATGAAAGGATTGTTAGTGGAGAGTCCCACATCAACTAATTAAGGAGATGATCATGGGTTTATAAGTATACATCTCCTTACTTTAGCGCTTCAGAGATGTGAGATCCCACATCGGTTGGAAAGGAGAACAAAGCATTCTTACTCTCCCTAGTAGACGCATTTTAAAAGGCTTGAGAGGAAGCTCAAAAGGTAAAGCCTAAAGAGAACAATATTTGCTAGCAGTGGGTTTGGACCGTTAAAATGGCATCAGAGTCAGACACTGAGCGATGTGCCAGTAAAGAGGTTGAGCCCCGAAGGGGGTTAAACACAAGGCGGTGTGCTAGTAAGGACGTTGGGCCCCGAAGGAGGTGGATTGGGGGGTCCCATATCGATTGGAGAAAGGAACGAGTGCCAATAAGAACGATGGGCCCCAAAGGAGATAGATTGTGAGATCCCACAATCGGTTGGGGAAGGAGAACGAAGCATTGTTTATAAGGGTGTGAAAAACCTCTCTCTGGCAAACACGTTTTAAAACCTTGAGAGAAAACCTAAACAGACCATATTTGTTGGCGGTGAATTTAGGCTGTTACAAGAAAACTTTGGCTTTTTACCACTTTACCACCTCGTGTGAAGTACAGGATTCCTCTCAGATGGGCCCGTAGAAAAGATAGTTATCTGTAAATATTACTGCTGAGGAAATCCTTTCTTCAGGAAGCTTAACCAAGAGGTCTGTAGATTAGCTATTTTCTCGTTTATTTAGTCGATGTGACCGTCCTCTGAGTATGAACTGTAGTTGTGTTTGCAGGATGATGATGTAGAAAGAGCAGATATCATTCCATTCTGACTCTTCCATGTTTGAAGGCATAGAAGATTACTCCCACCAAATTGGAGGGATGATTGGGCTAATAAATGCATCCAATCTAATATCATACAGGAGTAAGTAAATTTATATTTAGAGTCAGCAAACTTAACTCAGCAGATTATCGGTCCTTTCACTCATCCTTGCCATACGTGAGATCCCACACGATTGGAAAGGGGAACGAAGCATTTCTTATAAAGGTGTGGAAACCTCTCCTTACTAGATATGTTTTAAAAACCTTGAGAGGAAGTCCAGAAGAGAAATACAAAAGAAGACAATATATGCTAGCAATGGGCTTGGGTGGTTACAAATGGTATAGGAGCCAGACACCGGGCGGTGTGCCAATGAGAACACTGGGTCTCCAAAGAAGGTGGATTGTGAGATCCAACATCGGTTGAAGAGAGGAACAAAGCATTCTTTGTAAGAGTGTGGAAACATTTCCCTAACAAATGCGTTTTAAAAACCTTGAGGGGAACCTTAGAAGTGAAAGCTCAAATAGGACAATACTACTAGCAGTGGACATGGGCTGTTACAGCTTTCTCTACAACAAAACCAATCAAAAAAGATGGAACGTTATTCGTGAGTTTACCGAGAGCCTGATCATAAAATTTGTCTATTGCCATGTTATCTTGATCGTTTGCTATACTCTGCTTGTAATCTTAGGAACTCTGGCTCAGGTCCATCTCTATACAGTAAAGGTCATTATGTCAAATCTCAATATTATCAACCTCTTGACTGCAATCATTGGAACAAAAAGCTCTAGGTGGGTACTTGTGGAAGAGAGGACATGGCCTTCTAGAGCTAACTTAAACAAGAGTGAACTTGAAGTATATGGTAATGATTTTCTTCTGTTATTGATTATTAAAGGTACTTGGATGAAGTTCTTACATCCCCACTCATGTTCTCAGATCACTGAGTTCCAATGATGACGATCCTTTGCCCTCATATAACATGTTACATGTCACAATTGCACTATTGCGGCAGTAAAACGACGATGGTGCGATATTTGTTCTAACCCAGTGAACATGTCGGCTATGTGAACACTTCGCAGACAATAATGGTATATGCTCGAGTCTCAGATCACGTTTGGGGCATTTGATAGCATATAACTTAAGTAGGCAACAATAATGGCTTTGATAGCAGCATATAACCTAGGTAGGAAGATTTGACAACTAGTCACATCCTCGCATTTTACATTTTGGGGCATTTTAGTCTAAGTGGGTGTAGACATGATTTTGTGACTGATCATACACCCCCTACACCCCTTTACTGAAACAACAAGAATAAAAATAATAGGAGCCTACCTAACATGAAAATAAGTAAAAACGATTTAGAACGAGCATGCAGCCTTGGACAACACGTCTTGGAAAAAGCATGATCAAGGCATCTGACACGTAGTCATAGGCAACACGTTTTGGACAAGCATAATGTTACATATAATATGGTGCATGCTGATGGTATCTTGTCCCCCTTGAAGCTCCTCAACATCGTTGCTCCATGCTTTATATGTTAACTGAGATTGATCGGTTACTCGTCTTGAGGTAATCAAATAAAAGTTTATTTCTGGTTAGTTTTAGTCATTGAATATATATAATCGTAAGTGATCCAATCTTGTAATGATGAAGGTAGATGAGATTCCATGAAAAAGTTGATAAAGCTTAACCAAATACAGCAAATGTGATTCTCAT

mRNA sequence

GTCCTTAGTTCTTAGTTATTACTAAACTTAAGTGAAGAACATTTAGTGATTATGCTAATCTTAGTTGTTTCTTCATTTGGTTTCAAGAGTTTTGGTTTGAGATGTTTATGGGGGCAAGGATTTGTTAGGGTGTTCATAACTTGTCTACGAAAGATGGAACTGAAAAGGGAGATTTGGACGTGGAAGGGGATGATCATATGTTTATAAGTAAGGAATAATCTCCACTGGTATGAGGCTTTTGGGAAACCATAAGCAAAGTCATGAGAGCTTATACTCAAAGTGGACAATATCATATACTATTGTGGAGGTTCGTGATTCCCAATGTGATATCAGAGTCATGCCCTTAATTTAGCCATATCAATAAGATCCTCAAATGTCGAACAAAGGAATTGGGAGCCTCGAAGGTGTAGTAAAAAGTGACTCAAGTGTCGAATGAAAGGTGTACTTTGTTCGAAGGCTCCAGAGAAAGGAGTTGAGCCTCAATCAAAGGGAGCCTGGTCGAGGGCTCCATAGGCCTCAGGGGAGGCTCTATTGTATACTTTCTTCGATGAAAGGATTGTTAGTGGAGAGTCCCACATCAACTAATTAAGGAGATGATCATGGGTTTATAAGTATACATCTCCTTACTTTAGCGCTTCAGAGATGTGAGATCCCACATCGGTTGGAAAGGAGAACAAAGCATTCTTACTCTCCCTAGTAGACGCATTTTAAAAGGCTTGAGAGGAAGCTCAAAAGGTAAAGCCTAAAGAGAACAATATTTGCTAGCAGTGGGTTTGGACCGTTAAAATGGCATCAGAGTCAGACACTGAGCGATGTGCCAGTAAAGAGGTTGAGCCCCGAAGGGGGTTAAACACAAGGCGGTGTGCTAGTAAGGACGTTGGGCCCCGAAGGAGGTGGATTGGGGGGTCCCATATCGATTGGAGAAAGGAACGAGTGCCAATAAGAACGATGGGCCCCAAAGGAGATAGATTGTGAGATCCCACAATCGGTTGGGGAAGGAGAACGAAGCATTGTTTATAAGGGTGTGAAAAACCTCTCTCTGGCAAACACGTTTTAAAACCTTGAGAGAAAACCTAAACAGACCATATTTGTTGGCGGTGAATTTAGGCTGTTACAAGAAAACTTTGGCTTTTTACCACTTTACCACCTCGTGTGAAGTACAGGATTCCTCTCAGATGGGCCCGTAGAAAAGATAGTTATCTGTAAATATTACTGCTGAGGAAATCCTTTCTTCAGGAAGCTTAACCAAGAGGATGATGATGTAGAAAGAGCAGATATCATTCCATTCTGACTCTTCCATGTTTGAAGGCATAGAAGATTACTCCCACCAAATTGGAGGGATGATTGGGCTAATAAATGCATCCAATCTAATATCATACAGGAGAACTCTGGCTCAGGTCCATCTCTATACAGTAAAGGTCATTATGTCAAATCTCAATATTATCAACCTCTTGACTGCAATCATTGGAACAAAAAGCTCTAGGTGGGTACTTGTGGAAGAGAGGACATGGCCTTCTAGAGCTAACTTAAACAAGAGTGAACTTGAAGTATATGATCACTGAGTTCCAATGATGACGATCCTTTGCCCTCATATAACATGTTACATGTCACAATTGCACTATTGCGGCAGTAAAACGACGATGGTGCGATATTTGTTCTAACCCAGTGAACATGTCGGCTATGTGAACACTTCGCAGACAATAATGGTATATGCTCGAGTCTCAGATCACGTTTGGGGCATTTGATAGCATATAACTTAAGTAGGCAACAATAATGGCTTTGATAGCAGCATATAACCTAGGTAGGAAGATTTGACAACTAGTCACATCCTCGCATTTTACATTTTGGGGCATTTTAGTCTAAGTGGGTGTAGACATGATTTTGTGACTGATCATACACCCCCTACACCCCTTTACTGAAACAACAAGAATAAAAATAATAGGAGCCTACCTAACATGAAAATAAGTAAAAACGATTTAGAACGAGCATGCAGCCTTGGACAACACGTCTTGGAAAAAGCATGATCAAGGCATCTGACACGTAGTCATAGGCAACACGTTTTGGACAAGCATAATGTTACATATAATATGGTGCATGCTGATGGTATCTTGTCCCCCTTGAAGCTCCTCAACATCGTTGCTCCATGCTTTATATGTTAACTGAGATTGATCGGTTACTCGTCTTGAGGTAATCAAATAAAAGTTTATTTCTGGTTAGTTTTAGTCATTGAATATATATAATCGTAAGTGATCCAATCTTGTAATGATGAAGGTAGATGAGATTCCATGAAAAAGTTGATAAAGCTTAACCAAATACAGCAAATGTGATTCTCAT

Coding sequence (CDS)

ATGTTTGAAGGCATAGAAGATTACTCCCACCAAATTGGAGGGATGATTGGGCTAATAAATGCATCCAATCTAATATCATACAGGAGAACTCTGGCTCAGGTCCATCTCTATACAGTAAAGGTCATTATGTCAAATCTCAATATTATCAACCTCTTGACTGCAATCATTGGAACAAAAAGCTCTAGGTGGGTACTTGTGGAAGAGAGGACATGGCCTTCTAGAGCTAACTTAAACAAGAGTGAACTTGAAGTATATGATCACTGA

Protein sequence

MFEGIEDYSHQIGGMIGLINASNLISYRRTLAQVHLYTVKVIMSNLNIINLLTAIIGTKSSRWVLVEERTWPSRANLNKSELEVYDH
Homology
[Close]
BLAST of CmaCh12G001610 vs. ExPASy TrEMBL
Match: A0A6J1BRS5 (Methyltransferase OS=Momordica charantia OX=3673 GN=LOC111005117 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 57  GTKSSRWVLVEERTWPSRANLNKSELEVY 86
           GTKSSRW+ VEERTWPSRANLNKSEL VY
Sbjct: 455 GTKSSRWIPVEERTWPSRANLNKSELAVY 483

[Close]
BLAST of CmaCh12G001610 vs. ExPASy TrEMBL
Match: A0A6J1HDD0 (Methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462579 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 51  LLTAIIGTKSSRWVLVEERTWPSRANLNKSELEVY 86
           L   I GTKSSRW  VE+RTWPSRANLNKS+L VY
Sbjct: 428 LENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVY 462

[Close]
BLAST of CmaCh12G001610 vs. ExPASy TrEMBL
Match: A0A6J1K8J6 (Methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492106 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 51  LLTAIIGTKSSRWVLVEERTWPSRANLNKSELEVY 86
           L   I GTKSSRW  VE+RTWPSRANLNKS+L VY
Sbjct: 428 LENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVY 462

[Close]
BLAST of CmaCh12G001610 vs. NCBI nr
Match: KAG6585297.1 (putative pectin methyltransferase QUA2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 6.5e-14
Identity = 51/86 (59.30%), Postives = 56/86 (65.12%), Query Frame = 0 

Query: 1  MFEGIEDYSHQIGGMIGLINASNLISYRRTLAQVHLYTVKVIMSNLNIINLLTAIIGTKS 60
          M EGIEDYSHQIGGMIGLINASN+I       +   Y     + + N          TKS
Sbjct: 1  MSEGIEDYSHQIGGMIGLINASNIIQDEGHCGESQYYQP---IEDCN---------RTKS 60

Query: 61 SRWVLVEERTWPSRANLNKSELEVYD 87
          SRWVLVEERT PSRA +NKSELEVYD
Sbjct: 61 SRWVLVEERTRPSRAKINKSELEVYD 74

[Close]
BLAST of CmaCh12G001610 vs. NCBI nr
Match: XP_022132200.1 (probable pectin methyltransferase QUA2 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-05
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 57  GTKSSRWVLVEERTWPSRANLNKSELEVY 86
           GTKSSRW+ VEERTWPSRANLNKSEL VY
Sbjct: 455 GTKSSRWIPVEERTWPSRANLNKSELAVY 483

[Close]
BLAST of CmaCh12G001610 vs. NCBI nr
Match: KAF3683406.1 (hypothetical protein FXO37_01867 [Capsicum annuum])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 1   MFEGIEDYSHQIGGMIGLINASNLISYRRTLAQVHLYTVKVIMSNLNIIN-----LLTAI 60
           MF+ IEDYSHQI  MIGL   + +++  R +         +I+  L+I +     L   I
Sbjct: 180 MFDSIEDYSHQIAEMIGLQAGNVMLTGIRKV-------FFIIIKGLDIESPYYRPLQACI 239

Query: 61  IGTKSSRWVLVEERT-WPSRANLNKSELEV 85
            G +  RW+ +EERT WPSRA LN +EL+V
Sbjct: 240 AGMQRRRWIPIEERTKWPSRAKLNSNELKV 262

[Close]
BLAST of CmaCh12G001610 vs. NCBI nr
Match: KAG6598691.1 (putative pectin methyltransferase QUA2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-04
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 51  LLTAIIGTKSSRWVLVEERTWPSRANLNKSELEVY 86
           L   I GTKSSRW  VE+RTWPSRANLNKS+L VY
Sbjct: 425 LENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVY 459

[Close]
BLAST of CmaCh12G001610 vs. NCBI nr
Match: XP_023546073.1 (probable pectin methyltransferase QUA2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-04
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 51  LLTAIIGTKSSRWVLVEERTWPSRANLNKSELEVY 86
           L   I GTKSSRW  VE+RTWPSRANLNKS+L VY
Sbjct: 428 LENCIGGTKSSRWFPVEQRTWPSRANLNKSKLAVY 462

The following BLAST results are available for this feature:
BLAST of CmaCh12G001610 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G001610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BRS51.6e-0589.66Methyltransferase OS=Momordica charantia OX=3673 GN=LOC111005117 PE=3 SV=1[more]
A0A6J1HDD03.9e-0474.29Methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111462579 PE=3 SV=1[more]
A0A6J1K8J63.9e-0474.29Methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111492106 PE=3 SV=1[more]
BLAST of CmaCh12G001610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585297.16.5e-1459.30putative pectin methyltransferase QUA2, partial [Cucurbita argyrosperma subsp. s... [more]
XP_022132200.13.2e-0589.66probable pectin methyltransferase QUA2 [Momordica charantia][more]
KAF3683406.11.6e-0441.11hypothetical protein FXO37_01867 [Capsicum annuum][more]
KAG6598691.18.0e-0474.29putative pectin methyltransferase QUA2, partial [Cucurbita argyrosperma subsp. s... [more]
XP_023546073.18.0e-0474.29probable pectin methyltransferase QUA2 [Cucurbita pepo subsp. pepo][more]
BLAST of CmaCh12G001610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G001610.1CmaCh12G001610.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0008168 methyltransferase activity