CmaCh12G000680 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G000680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr12: 252331 .. 253433 (+)
RNA-Seq ExpressionCmaCh12G000680
SyntenyCmaCh12G000680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGTAAATATTGCCTTGATTATTACATTAAACTTTCTATTTTTATTCATTTTGGTCTCAATGTGTCATAGAAAAAAATTATTACAGTACTTTTATTTATTTTTTTTATTTTCAAAATTTTAAAGAGTAGAAGATAAAATTTAGTTATGCAGGAAAACTATTAAATATATATTCAAGACTAGGTTTCACCGCGTCAAATTAAATAAAGAATTAATTTTTAATTAGGTTTTTATGAATTGGTAAAATATTAATTTTTAACTTTTTTTTTCTTTTTTCAAATATTATTTAACCTATTAAGAATCACATTAAAAATATTTGGAATGACTTTAAAAATCCCCTCGCACCAAGTATTCATTTGGTAACTGTAAAAAGTATAAAGTTCCTATAAAGCAATGGCCGATTCGCTGGAACTCGACTGAACTGCGTAATCCTTCGTCATTTCATTGACAACCGGAGGAAAGATCTGTCCCAGAAGCGCTTGTGCTCGCCGCTCTTCAAACCTTTGGCTGTTGGGAGGTCAACAAGTTCCTTTCCTCCCGTTCATTCGTTTCCGAAGGACTACGATCTGAGAATCTCTGCGGCTTGTATCAGACCCGCTGTTTCTTTTCTTAATAGCAATTTCTGTACTTTCTGTAAGTACTCTGTGATTTGTTTGAATTTGTGTTTTCAATGTTATTGGATTCGCCGTTTAAGATTTAGTTGGATTTAGGCTTTTAGATTAATGGGTTCGAACCAATTGTTTCTTGGATATCGAGAGATTCGGATCTTTGTTGGAGAAGGTTCATGTTTTAACATTGTTACCCATTCCCGATTCGTAAATTGAATTCAAGGTTTTCTCCTTCAGCTTTCAATATCTATGAGGAACTACATTTCGTGACAGTTTCTCACAGAGATTGTTTAGTTTAGCTTTGTGGTGCCCAAAATCTTAATGGAACTTCAAAATGGTGTATTTCTGTAAAAATCGAAGAGCCTAATTTATTTACTGTGGAGTTTTCGAATTACCAAGAGAGTTTGTCGTCAATCATGAATAATATGGATGTGTGTATTGAACTTCATTTCAGTCCGTTCCTAACTTATTTTATCCTATTTCTAGGTTGA

mRNA sequence

ATGGAGTGCAATGGCCGATTCGCTGGAACTCGACTGAACTGCGTAATCCTTCGTCATTTCATTGACAACCGGAGGAAAGATCTGTCCCAGAAGCGCTTGTGCTCGCCGCTCTTCAAACCTTTGGCTGTTGGGAGGTCAACAAGTTCCTTTCCTCCCGTTCATTCGTTTCCGAAGGACTACGATCTGAGAATCTCTGCGGCTTGTATCAGACCCGCTGTTTCTTTTCTTAATAGCAATTTCTGTACTTTCTGTTGA

Coding sequence (CDS)

ATGGAGTGCAATGGCCGATTCGCTGGAACTCGACTGAACTGCGTAATCCTTCGTCATTTCATTGACAACCGGAGGAAAGATCTGTCCCAGAAGCGCTTGTGCTCGCCGCTCTTCAAACCTTTGGCTGTTGGGAGGTCAACAAGTTCCTTTCCTCCCGTTCATTCGTTTCCGAAGGACTACGATCTGAGAATCTCTGCGGCTTGTATCAGACCCGCTGTTTCTTTTCTTAATAGCAATTTCTGTACTTTCTGTTGA

Protein sequence

MECNGRFAGTRLNCVILRHFIDNRRKDLSQKRLCSPLFKPLAVGRSTSSFPPVHSFPKDYDLRISAACIRPAVSFLNSNFCTFC
Homology
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BLAST of CmaCh12G000680 vs. NCBI nr
Match: KAG6585213.1 (hypothetical protein SDJN03_17946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 4  NGRFAGTRLNCVILRHFIDNRRKDLSQKRLCSPLFKPLAVGRSTSSFPPVHSFPKDYDLR 63
          NGRFAGTRLNC ILRHFI NRRK+L+QKRLCSPLFKPLAVGRSTSSFPPVHS PKDYDLR
Sbjct: 8  NGRFAGTRLNCGILRHFIHNRRKNLTQKRLCSPLFKPLAVGRSTSSFPPVHSLPKDYDLR 67

Query: 64 ISAACIRPAVSFLNSNFCTFC 85
          ISAACIRPAVSFL+SNFCTFC
Sbjct: 68 ISAACIRPAVSFLHSNFCTFC 88

The following BLAST results are available for this feature:
BLAST of CmaCh12G000680 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G000680 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G000680 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585213.11.0e-3592.59hypothetical protein SDJN03_17946, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh12G000680 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G000680.1CmaCh12G000680.1mRNA