CmaCh11G016490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G016490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	copper-transporting ATPase PAA1, chloroplastic-like
Location	Cma_Chr11: 10840973 .. 10846440 (-)
RNA-Seq Expression	CmaCh11G016490
Synteny	CmaCh11G016490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGTTGACATTTCTCCATTCTCGTTGGTACCGGGGAGAGGGTCAACAGATAACGGCAGATTTCTTTCATCCATGGATTCCTTACTCTCTTTAATGGCGTCCAATGCGCCTCTCTTCACTTCTCCCCCCATCACTCTCAGCTTCTCCAGACCCAATTTCACCCACCCCACCTTCATTTCCCCTTTCACTGTTACCTCTTCTTTCTCGCTACGTACTGCTGCTCCGCCCATCCACCGTCCTTCCAAATTCATCCCGATCTCTGCTTCTGGCAATGGTAATGACGGTGTTCGTGGAGACGGCGGCGGTGGCGATGACGACTCGAAATTGCTTGATGGAGAAGCTGAGGATAATGCGACACTGTCCGCGGATGCGATTGTTTTGGATGTTGGAGTGCGAGATAGTTCTCTCCCTTTTCAGTTTTCGATTGGTGCTAATTTTGATGGATTCTGTGCTGTTTGTAATAGGGGATGATGTGCACGGGGTGTTCCACGAGTGTCAAGAGGATTCTTGAAAGTCAGGTGGTTATATACTTATAGTTTCTTCTTATCTGTTTTACTTACTCTTTGGTGATCGTTACTTATCCTTAAATACTTCAGTTGCTGATTGAACTGAGCATGTAGGAACTCTGTACGAGTTTATTGTTTGATTGATATCTAAGAATCAGAGATTTAAGAGGGATGGGAACAGGGTATAATAGCATTTTCAGTATATAATTGAATTGTTTCAGATTTCTAGTTGGACTTCTATAATCTAACAGAGTAATTGAATTTAGGCCTAATCTATCGGGAATCATTAACCTCCATAATAGTATGATATTATCCACTTTGAGCATAAGCTCTCATCGCTTTGCTTTTAATTTCTCCGAAAGGTCTCATACCAATGGAGATGTACTCCTTATTTATAAACTCATGATCAATCCTCTTAATTAGCCAAGGTGGGACTCCCTCCCAACAATCCTCCATTCGAACAAAGTACACCATAGAGTCTCCTTTGAGGCCTATGGAGCCCTCGAACAACCTCCTCTTAATCGAGGTTTGACTACTTTCTCTAGAGCCCTCGAACAAAGTACACCCTTTGTTTGACACTTGAGTCACTTTTGACTACACCCTCGAGGCTCACAACTTCTTTGTTCGACATTTGAGAATTCTATTGACATGACTAAGTTAAGGGCATAACTCTGATGATACCATGTTAGAAACCACGGAATCAAGTTGTATTTGTATGAGCCCAATAGGGTACTATTTGTAACCTGACTTTGATACCATGTTAGGAATCACGAACTTCCACAATGGTATGATTGTCCACTTTGAGCATAAGCTCTCATGGTTTTGCTCTTGGTTTCCACAAAAGGCCTCATACAAATGGAGATAGTGTTCCTTACTTATAAATCCATGATCTTCCTCTTAATTAGCCAATGTGGGGGACTACTCTTTTCAATAATCCTCAACAATTGTTGAGAATTGTTGGGAGAGGAGTCCCACATCGGCTAATTAAGGGGTGATCATGAGTTTATAAGTAAGGAACACTATCTCAATTGGTATGAGGCCTTTTGGGAAAACCAACAATAAAGCTACGAGAGCTTATGCTCAAAGTGGACAGTATCATACCATTGTGGAGGGTCGTAGTTCGTAACAACATAATCTATTGGAGTTTTGCACGCTTTCGTGTGATATTAAAGCTAGACATGCCACTGAAAATTTCATTTCTTTCCCGATTAATATTGATCATCTGTTATCATGAACAGCCGCCAGTGTCGCATGCTACTGTTGACCTTGCTTCAGAGACAGCATTCGTGTGGCTTGTAGCTGAAGCAAAAATCACACCCAACTGGCGGGAGGAGCTGGGGGAGGCACTTGCAAAGCATTTGACTACTTGTGGTTTTTCTTCTAAGGCTCATGGTCAGTGTCATAAATTCACACCACTCAACCTCCATACTTCTTGAACTTGAGCTCTTAGTATAAGATATATGATTTTCATATTGAGTATTTTTAAATGATAATATTTGAAAATGTGGACTACCTAGATTATTGTACGAATCCTATTGCCGTCTAGGACATGTCATATAGTTTCTACAACTTGCTAATTTTGTATTTCCCATCATCTTTCTTGCTCACCAATTTCTGGGGATATTGATTTGTTTTACATGTTTGAATTTCTTTCGGAACGTGAGGATTATTGGACTGTTTAATTGATTGTTCGGAACCATGAACTTCCACAATGGTACGATATTATCCACTTTGAGCATAAGCTCTCATGTATTTTCTTTTGGTTTCCCCTAAAGGCCTCGTACCAATGGAAATAGTATTCCTTACTTATAAACCCATGATCTTCTATTTAATTAACTAATATGGGACTCCCTCCCAACAATCCTCAACAATCTTCCCCTCGAACAAAATACACCATAGAGCCTGACCTATGTAGCCCTTGAACGGCCTCCCATTAATCGATGCACGACTTCTTCTCTGGAGTCTTTGAACAAAGTACACCTATTGTTCGACACTTAGTCACTTTTGACTACATCTTCGAGGCTCTCAACTTTTTTGTTTGACATTTGAGGATTCTACTGACATGACTAAGTTAAGGGCATGACTCTAATACCATGTTAGGAACCACGGACCTCTACAATTGTATGATATTGTCCACTTTAAGCATAAGTTCTCATGATTTTTCTTTTGGTTTCCCCAAAAGGCCTCATACTAATGAAGATAGTATTCCTTACTTATAAACTCATTGTCTTCCCCTCAATTAGCCAACATGGGTCTCCCTCCCAACAATCCTCAACATTGATCTCTCTCTTTTATCTTTCTTTCTTTTTTTCATTCATTCACTAGAAATTTGGCATTTGAAACATTAAACCATGCTATCTTGGTATAGAAAACAAAGCAATTCAACACTGTACTGAAAACAAAGAAGCCTTAAAAGTAGGCAGAGTTAATGTTCTATATATATATATATATATATAGCTACTTTTGATACTTCAATCCCTAAGCTTATGTTCTTAATCATTGTAAGACTTGCAATAACAAGTAAAAGAAAAACAATACACTAACAATTGTTGTTCCTTTAATTTTTAGGTTCTGAATACAAAAGATGCTGAGAATGTATAATGCTTGTTAAAATCTTGATTATTAGGTGTTAAGGCTTATATGTAGTATCGATATTTTGCCAGTCCTGAAATGATAGATTTTTTGTTGTTTAAAATTGCCATATGATTCAAAGTGCTGGGTTATTCATTTATAAATTTAGGCACAGAACTCTCCAACTTGTAAATATATTTGATTTCACGATGAAAATATAGTTCCTTGAGAAGAGATAGAAAGAAGACCAAAGAAACGAGTTCAGTCTGCAAGAGAGAAGAAGAACAAAAAACACATGCACATCTATTGTAACGACCCTAAGTTTCTATTGGCCTAGAGTCGCTACCACATGCATGACATAACTTATTTATGTGGAAATATTCATTAGGATCGTTATGCATATGATAGTGGCTGAATGTTTTCGCATAAAAAGATTACGTCATGCATATAGTAGCACCTCTATTTCCCTTTTGAAATTACGTTCGTTACATGTATTCCCTCTTGATTTTTGTAGTTCCCATGACTTACGTGAACAATGCTGGTTATTTACATGGCTTATGTGAACAATGCTGGTTATTTACAGGTCAAGGTGCTATAGGAGGAGATGTTTCATGATAGAAATGCAAACTTTATGGTGCAACCTTATGACACAGATAGGCATTTTCAACATTGGTTGCCTTATTAGTAGAATTTAGAATTGAACTCGAAAATAAATGTCATAGCAAAGAGCAGAATTCAACTTGTTCTATCAATATGTATCAATAAACTGATAGATTTCAGCCATGACGGTTTAAAACTCAAAGGGAATGATGATGATGAAAGTACAGATTTTTTCTTTCGCCTCTCGTGTAAACCATCGTGCTTGTAAGTGACATCGGTTTGCAACTTTTATGAGTACATAAAAGTTCTAACTTAATCATAGTTTAACGGGTTAAAAGATGTAGTCTCGACCAAGATATTATGGATTCTAATTCTTCACTTTGTTTGTATTTAGTTGAATCAAAGATCGCCGACATTCTTCCGCCTTTCTTGAATCTCTTAATTCCATCTTAGCCCCATATTAAATTTCTTAATTATTCACGTATTTTTCACTCTTAATATCTCCGCTCACATATTGAGTGATTTCAGTAAAGGGCAACAAAGGCAAGTGATCTTATTGTTTAACGGTTCAAGGCAAGGAGGCAAGATGATTTAAACCAAATTATTCATGAGTTTGTAAAAGAATGGACCATAAATATTTAATCCCGAGCTAGGAAGAGACCATCTCCACATTATGAGTTTCAATTATACCAAATTAATTAATTAATCAATTTTCATTCATTAAGACCTATAGTCGAACTCTTATGAATTATAGGACAAGTTGTGTCTATTTATATAATTATCATAAACAAGTCGATGTTCCACAAATGGCTGATAATTACATTTGGGTCAAAAGTTTGTAGTCCCTCTCAAGCTAATAAAAGGATGAGAACGTAAATAAAGAGTAATAGAGGGGCAATTAAGAAATACTGATATTTACTTCTCTGCCCCTCTCTGTATATTAATATTTTTCTCCCTCGGCTCTTCCGGATACTTTACTCGACGGATCTCTCTTCTTCTGTCCTCTGAAACCCTAACCCTAATCTTCATCGTCCTACAAAATGTCTCATTTTGGAAGGTCGGGTCCTCCAGATATTACAGACACCTACTCGCTTCTCGTGCTCAACATCACCTTCCGTATGCTTCAATCTCCCTCTCTTTCTTAATTCTTTTTGTTTCTTTTTTGTTTTTTGTTTTTGTTTCTTGATTCTTAGCTGAGACTGAGATTTTGTGTTTTTAGGCACCACTGCTGATGACCTGTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGTATAGTTCCCTGCGTTGTTGCGATTGATTACCTTTTTTTTTTTTTTTAATGATTTTATCTTCTGGAATTTGTTTGATTTCTGTTAGAAATGATAGAATTTTTAATAGCTGGCATGAGTTTTGTGTTTGTTAGATTAAACATTTAGAGGTTTAGGATTGAGTTGATTTCCTTTCATTGATATTCTTCTAGTTTTTGTGACATCAGTTTGCACATGAATGGAATTGTACTCTTCATTCAGCTTAAATGCTGCATGGGGTTTTTTATTTTTATTTTTCATTTTTCTGTTTGTTTATTTATTTTAAAATTTTGGAATTGGGAATTGATTATTTTTGTTTTGACTGTTTCGTGATTGTGTCTTATATTGTTTTGTGGGCTAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTACGCAGACGAAGCTCAGAAAGCAGTGGACAGGCTAGATGGTACCCCCGCCACTTTGTCTCATGTTGTTTGA

mRNA sequence

ATGCCAGTTGACATTTCTCCATTCTCGTTGGTACCGGGGAGAGGGTCAACAGATAACGGCAGATTTCTTTCATCCATGGATTCCTTACTCTCTTTAATGGCGTCCAATGCGCCTCTCTTCACTTCTCCCCCCATCACTCTCAGCTTCTCCAGACCCAATTTCACCCACCCCACCTTCATTTCCCCTTTCACTGTTACCTCTTCTTTCTCGCTACGTACTGCTGCTCCGCCCATCCACCGTCCTTCCAAATTCATCCCGATCTCTGCTTCTGGCAATGGTAATGACGGTGTTCGTGGAGACGGCGGCGGTGGCGATGACGACTCGAAATTGCTTGATGGAGAAGCTGAGGATAATGCGACACTGTCCGCGGATGCGATTGTTTTGGATGTTGGAGGGATGATGTGCACGGGGTGTTCCACGAGTGTCAAGAGGATTCTTGAAAGTCAGCCGCCAGTGTCGCATGCTACTGTTGACCTTGCTTCAGAGACAGCATTCGTGTGGCTTGTAGCTGAAGCAAAAATCACACCCAACTGGCGGGAGGAGCTGGGGGAGGCACTTGCAAAGCATTTGACTACTTGTGGTTTTTCTTCTAAGGCTCATGGCACCACTGCTGATGACCTGTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTACGCAGACGAAGCTCAGAAAGCAGTGGACAGGCTAGATGGTACCCCCGCCACTTTGTCTCATGTTGTTTGA

Coding sequence (CDS)

ATGCCAGTTGACATTTCTCCATTCTCGTTGGTACCGGGGAGAGGGTCAACAGATAACGGCAGATTTCTTTCATCCATGGATTCCTTACTCTCTTTAATGGCGTCCAATGCGCCTCTCTTCACTTCTCCCCCCATCACTCTCAGCTTCTCCAGACCCAATTTCACCCACCCCACCTTCATTTCCCCTTTCACTGTTACCTCTTCTTTCTCGCTACGTACTGCTGCTCCGCCCATCCACCGTCCTTCCAAATTCATCCCGATCTCTGCTTCTGGCAATGGTAATGACGGTGTTCGTGGAGACGGCGGCGGTGGCGATGACGACTCGAAATTGCTTGATGGAGAAGCTGAGGATAATGCGACACTGTCCGCGGATGCGATTGTTTTGGATGTTGGAGGGATGATGTGCACGGGGTGTTCCACGAGTGTCAAGAGGATTCTTGAAAGTCAGCCGCCAGTGTCGCATGCTACTGTTGACCTTGCTTCAGAGACAGCATTCGTGTGGCTTGTAGCTGAAGCAAAAATCACACCCAACTGGCGGGAGGAGCTGGGGGAGGCACTTGCAAAGCATTTGACTACTTGTGGTTTTTCTTCTAAGGCTCATGGCACCACTGCTGATGACCTGTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTACGCAGACGAAGCTCAGAAAGCAGTGGACAGGCTAGATGGTACCCCCGCCACTTTGTCTCATGTTGTTTGA

Protein sequence

MPVDISPFSLVPGRGSTDNGRFLSSMDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFIPISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHGTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGTPATLSHVV

Homology

[Close]

BLAST of CmaCh11G016490 vs. ExPASy Swiss-Prot
Match: Q9SZC9 (Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAA1 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-24
Identity = 79/201 (39.30%), Postives = 103/201 (51.24%), Query Frame = 0


Query: 15  GSTDNGRFLSSMDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTA 74
           G     RF SS  +L SL A+  P+       LS S P+F         +++S       
Sbjct: 60  GGFHGSRFTSSNSALRSLGAAVLPVIRHRLECLSSSSPSFR--------SISSGGG---- 119

Query: 75  APPIHRPSKFIPISASGNGNDGVRGDGGG----GDDDSKLLDGEAEDNATLSADAIVLDV 134
                        S  G  N G  G GGG    GD  SKL    ++  +  S+D I+LDV
Sbjct: 120 -------------SGFGGYNGGSGGGGGGGSESGDSKSKLGANASDGVSVPSSDIIILDV 179

Query: 135 GGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHL 194
           GGM C GCS SVK+ILESQP V+ A+V+L +ETA VW V EAK  P+W++ LGE LA HL
Sbjct: 180 GGMTCGGCSASVKKILESQPQVASASVNLTTETAIVWPVPEAKSVPDWQKSLGETLANHL 235

Query: 195 TTCGFSSKAHGTTADDLYPLF 212
           T CGF S       ++ + +F
Sbjct: 240 TNCGFQSTPRDLVTENFFKVF 235

[Close]

BLAST of CmaCh11G016490 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 202 TTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 255
           TTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFAFVRYKY DEA KAV+RLDG
Sbjct: 27  TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79

[Close]

BLAST of CmaCh11G016490 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 190 LTTCGFSSKAHGTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAV 249
           +T+    +  + T+ D L  +F KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+
Sbjct: 13  MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72

Query: 250 DRLDG 255
           D +DG
Sbjct: 73  DAMDG 77

[Close]

BLAST of CmaCh11G016490 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 190 LTTCGFSSKAHGTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAV 249
           +T+    +  + T+ D L  +F KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+
Sbjct: 13  MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72

Query: 250 DRLDG 255
           D +DG
Sbjct: 73  DAMDG 77

[Close]

BLAST of CmaCh11G016490 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 190 LTTCGFSSKAHGTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAV 249
           +T+    +  + T+ D L  +F KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+
Sbjct: 13  MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72

Query: 250 DRLDG 255
           D +DG
Sbjct: 73  DAMDG 77

[Close]

BLAST of CmaCh11G016490 vs. ExPASy TrEMBL
Match: A0A6J1JNV4 (copper-transporting ATPase PAA1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486165 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.5e-91
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 60

Query: 86  PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 145
           PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI
Sbjct: 61  PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 120

Query: 146 LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHGTTA 205
           LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHG  A
Sbjct: 121 LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHGQGA 179

[Close]

BLAST of CmaCh11G016490 vs. ExPASy TrEMBL
Match: A0A6J1EQ92 (copper-transporting ATPase PAA1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434685 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.6e-88
Identity = 174/180 (96.67%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPF+VTSSFSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60

Query: 86  PISASGNGNDGVRGDGGGGDDDSKLLDG-EAEDNATLSADAIVLDVGGMMCTGCSTSVKR 145
           PISASGNGNDGVRGDGGGGDDDSKLLDG EAEDNATLSAD IVLDVGGMMCTGCSTSVKR
Sbjct: 61  PISASGNGNDGVRGDGGGGDDDSKLLDGEEAEDNATLSADVIVLDVGGMMCTGCSTSVKR 120

Query: 146 ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHGTTA 205
           ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKA G  A
Sbjct: 121 ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQGQGA 180

[Close]

BLAST of CmaCh11G016490 vs. ExPASy TrEMBL
Match: A0A6J1HI09 (copper-transporting ATPase PAA1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463827 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58
Identity = 139/204 (68.14%), Postives = 148/204 (72.55%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDS LS+MASNAPLFT   IT SFS  NFTH   ISP + T SFSLR A PP+HR  KFI
Sbjct: 1   MDSALSVMASNAPLFTLSTITRSFSTLNFTHSLSISPIS-TLSFSLRAAVPPLHRRHKFI 60

Query: 86  PISASGNGNDGVRGD---GGGGDD--------DSKLLDGEAEDNATLSADAIVLDVGGMM 145
             S+SGNGN GVRG+   GGGGDD         S LL GEAED+A LSADAIVL VGGM 
Sbjct: 61  SNSSSGNGNGGVRGESGGGGGGDDGGPDGGDVGSNLLAGEAEDDAALSADAIVLGVGGMT 120

Query: 146 CTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCG 205
           C GCS SVKRILESQP VSHA+VDLASETA VW  AEAKITPNWREELGEALAKHLTTCG
Sbjct: 121 CKGCSASVKRILESQPQVSHASVDLASETAVVWPAAEAKITPNWREELGEALAKHLTTCG 180

Query: 206 FSSKAHGTTADDLYPLFHKYGKVV 219
           FSSK  G          HK+ KV+
Sbjct: 181 FSSKVQGQ--------HHKFDKVL 195

[Close]

BLAST of CmaCh11G016490 vs. ExPASy TrEMBL
Match: A0A6J1HFH1 (copper-transporting ATPase PAA1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463827 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 4.8e-58
Identity = 136/190 (71.58%), Postives = 143/190 (75.26%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDS LS+MASNAPLFT   IT SFS  NFTH   ISP + T SFSLR A PP+HR  KFI
Sbjct: 1   MDSALSVMASNAPLFTLSTITRSFSTLNFTHSLSISPIS-TLSFSLRAAVPPLHRRHKFI 60

Query: 86  PISASGNGNDGVRGD---GGGGDD--------DSKLLDGEAEDNATLSADAIVLDVGGMM 145
             S+SGNGN GVRG+   GGGGDD         S LL GEAED+A LSADAIVL VGGM 
Sbjct: 61  SNSSSGNGNGGVRGESGGGGGGDDGGPDGGDVGSNLLAGEAEDDAALSADAIVLGVGGMT 120

Query: 146 CTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCG 205
           C GCS SVKRILESQP VSHA+VDLASETA VW  AEAKITPNWREELGEALAKHLTTCG
Sbjct: 121 CKGCSASVKRILESQPQVSHASVDLASETAVVWPAAEAKITPNWREELGEALAKHLTTCG 180

[Close]

BLAST of CmaCh11G016490 vs. ExPASy TrEMBL
Match: A0A6J1HV12 (copper-transporting ATPase PAA1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467071 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 6.3e-58
Identity = 138/204 (67.65%), Postives = 148/204 (72.55%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDS LS+MASNAPLF    IT SFS  NFTH   ISP + T SFSLR A PP+HR  KFI
Sbjct: 1   MDSALSVMASNAPLFALSTITRSFSTLNFTHSPSISPIS-TLSFSLRAAVPPLHRRHKFI 60

Query: 86  PISASGNGNDGVRGD---GGGGDD--------DSKLLDGEAEDNATLSADAIVLDVGGMM 145
             S+SGNGN GVRG+   GGGGDD         S LL GEAED+ATLSADAIVL VGGM 
Sbjct: 61  SNSSSGNGNGGVRGESGGGGGGDDGGPDGGDVGSNLLSGEAEDDATLSADAIVLGVGGMT 120

Query: 146 CTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCG 205
           C GCS SVKRILESQP VS+A+VDLASETA VW  AEAKITPNWREELGEALAKHLTTCG
Sbjct: 121 CKGCSASVKRILESQPQVSYASVDLASETAVVWPAAEAKITPNWREELGEALAKHLTTCG 180

Query: 206 FSSKAHGTTADDLYPLFHKYGKVV 219
           FSSK  G          HK+ KV+
Sbjct: 181 FSSKVQGQ--------HHKFDKVL 195

[Close]

BLAST of CmaCh11G016490 vs. NCBI nr
Match: XP_022988963.1 (copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 345.9 bits (886), Expect = 3.1e-91
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 60

Query: 86  PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 145
           PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI
Sbjct: 61  PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 120

Query: 146 LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHGTTA 205
           LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHG  A
Sbjct: 121 LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHGQGA 179

[Close]

BLAST of CmaCh11G016490 vs. NCBI nr
Match: KAG6588770.1 (Copper-transporting ATPase PAA1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340.9 bits (873), Expect = 9.9e-90
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPF+VTSSFSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60

Query: 86  PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 145
           PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI
Sbjct: 61  PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 120

Query: 146 LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHGTTA 205
           LESQPPVSHATVDLASETAFVWLVAEAK+TPNWREELGEALAKHLTTCGFSSKA G  A
Sbjct: 121 LESQPPVSHATVDLASETAFVWLVAEAKVTPNWREELGEALAKHLTTCGFSSKAQGQGA 179

[Close]

BLAST of CmaCh11G016490 vs. NCBI nr
Match: KAG7022542.1 (Copper-transporting ATPase PAA1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.0 bits (868), Expect = 3.7e-89
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDSLLSLMASNAPLF+SPPITLSFSRPNFTHPTFISPF+VTSSFSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFSSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60

Query: 86  PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 145
           PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI
Sbjct: 61  PISASGNGNDGVRGDGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVKRI 120

Query: 146 LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHG 202
           LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKA G
Sbjct: 121 LESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQG 176

[Close]

BLAST of CmaCh11G016490 vs. NCBI nr
Match: XP_022927930.1 (copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 335.1 bits (858), Expect = 5.4e-88
Identity = 174/180 (96.67%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPF+VTSSFSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFSVTSSFSLRTAAPPIHRPSKFI 60

Query: 86  PISASGNGNDGVRGDGGGGDDDSKLLDG-EAEDNATLSADAIVLDVGGMMCTGCSTSVKR 145
           PISASGNGNDGVRGDGGGGDDDSKLLDG EAEDNATLSAD IVLDVGGMMCTGCSTSVKR
Sbjct: 61  PISASGNGNDGVRGDGGGGDDDSKLLDGEEAEDNATLSADVIVLDVGGMMCTGCSTSVKR 120

Query: 146 ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHGTTA 205
           ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKA G  A
Sbjct: 121 ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQGQGA 180

[Close]

BLAST of CmaCh11G016490 vs. NCBI nr
Match: XP_023529553.1 (copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.8 bits (839), Expect = 8.6e-86
Identity = 171/181 (94.48%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 26  MDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTAAPPIHRPSKFI 85
           MDSLLSLMASNAPLFTSP ITLSFSRPNFTHPTFISPF+VTS FSLRTAAPPIHRPSKFI
Sbjct: 1   MDSLLSLMASNAPLFTSPTITLSFSRPNFTHPTFISPFSVTSPFSLRTAAPPIHRPSKFI 60

Query: 86  PISASGNGNDGVRGD--GGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVK 145
           PISASGN NDGVRGD  GGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVK
Sbjct: 61  PISASGNSNDGVRGDGGGGGGDDDSKLLDGEAEDNATLSADAIVLDVGGMMCTGCSTSVK 120

Query: 146 RILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAHGTT 205
           +ILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKA G  
Sbjct: 121 KILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHLTTCGFSSKAQGQG 180

[Close]

BLAST of CmaCh11G016490 vs. TAIR 10
Match: AT4G33520.1 (P-type ATP-ase 1 )

HSP 1 Score: 115.2 bits (287), Expect = 8.2e-26
Identity = 80/197 (40.61%), Postives = 102/197 (51.78%), Query Frame = 0


Query: 15  GSTDNGRFLSSMDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTA 74
           G     RF SS  +L SL A+  P+       LS S P+F         +++S       
Sbjct: 60  GGFHGSRFTSSNSALRSLGAAVLPVIRHRLECLSSSSPSFR--------SISSGGG---- 119

Query: 75  APPIHRPSKFIPISASGNGNDGVRGDGGG----GDDDSKLLDGEAEDNATLSADAIVLDV 134
                        S  G  N G  G GGG    GD  SKL    ++  +  S+D I+LDV
Sbjct: 120 -------------SGFGGYNGGSGGGGGGGSESGDSKSKLGANASDGVSVPSSDIIILDV 179

Query: 135 GGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHL 194
           GGM C GCS SVK+ILESQP V+ A+V+L +ETA VW V EAK  P+W++ LGE LA HL
Sbjct: 180 GGMTCGGCSASVKKILESQPQVASASVNLTTETAIVWPVPEAKSVPDWQKSLGETLANHL 231

Query: 195 TTCGFSSKAHGTTADDL 208
           T CGF S   G   +D+
Sbjct: 240 TNCGFQSTPRGEVPEDI 231

[Close]

BLAST of CmaCh11G016490 vs. TAIR 10
Match: AT4G33520.2 (P-type ATP-ase 1 )

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-25
Identity = 79/201 (39.30%), Postives = 103/201 (51.24%), Query Frame = 0


Query: 15  GSTDNGRFLSSMDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTA 74
           G     RF SS  +L SL A+  P+       LS S P+F         +++S       
Sbjct: 60  GGFHGSRFTSSNSALRSLGAAVLPVIRHRLECLSSSSPSFR--------SISSGGG---- 119

Query: 75  APPIHRPSKFIPISASGNGNDGVRGDGGG----GDDDSKLLDGEAEDNATLSADAIVLDV 134
                        S  G  N G  G GGG    GD  SKL    ++  +  S+D I+LDV
Sbjct: 120 -------------SGFGGYNGGSGGGGGGGSESGDSKSKLGANASDGVSVPSSDIIILDV 179

Query: 135 GGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHL 194
           GGM C GCS SVK+ILESQP V+ A+V+L +ETA VW V EAK  P+W++ LGE LA HL
Sbjct: 180 GGMTCGGCSASVKKILESQPQVASASVNLTTETAIVWPVPEAKSVPDWQKSLGETLANHL 235

Query: 195 TTCGFSSKAHGTTADDLYPLF 212
           T CGF S       ++ + +F
Sbjct: 240 TNCGFQSTPRDLVTENFFKVF 235

[Close]

BLAST of CmaCh11G016490 vs. TAIR 10
Match: AT4G33520.3 (P-type ATP-ase 1 )

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-25
Identity = 79/201 (39.30%), Postives = 103/201 (51.24%), Query Frame = 0


Query: 15  GSTDNGRFLSSMDSLLSLMASNAPLFTSPPITLSFSRPNFTHPTFISPFTVTSSFSLRTA 74
           G     RF SS  +L SL A+  P+       LS S P+F         +++S       
Sbjct: 60  GGFHGSRFTSSNSALRSLGAAVLPVIRHRLECLSSSSPSFR--------SISSGGG---- 119

Query: 75  APPIHRPSKFIPISASGNGNDGVRGDGGG----GDDDSKLLDGEAEDNATLSADAIVLDV 134
                        S  G  N G  G GGG    GD  SKL    ++  +  S+D I+LDV
Sbjct: 120 -------------SGFGGYNGGSGGGGGGGSESGDSKSKLGANASDGVSVPSSDIIILDV 179

Query: 135 GGMMCTGCSTSVKRILESQPPVSHATVDLASETAFVWLVAEAKITPNWREELGEALAKHL 194
           GGM C GCS SVK+ILESQP V+ A+V+L +ETA VW V EAK  P+W++ LGE LA HL
Sbjct: 180 GGMTCGGCSASVKKILESQPQVASASVNLTTETAIVWPVPEAKSVPDWQKSLGETLANHL 235

Query: 195 TTCGFSSKAHGTTADDLYPLF 212
           T CGF S       ++ + +F
Sbjct: 240 TNCGFQSTPRDLVTENFFKVF 235

[Close]

BLAST of CmaCh11G016490 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-23
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 202 TTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 255
           TTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFAFVRYKY DEA KAV+RLDG
Sbjct: 27  TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79

[Close]

BLAST of CmaCh11G016490 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-23
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 202 TTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 255
           TTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFAFVRYKY DEA KAV+RLDG
Sbjct: 27  TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79

The following BLAST results are available for this feature:

BLAST of CmaCh11G016490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZC9	3.4e-24	39.30	Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9FMG4	1.2e-21	90.57	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
Q3MHR5	1.8e-09	44.62	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
P30352	1.8e-09	44.62	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q01130	1.8e-09	44.62	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]

BLAST of CmaCh11G016490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNV4	1.5e-91	98.88	copper-transporting ATPase PAA1, chloroplastic-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1EQ92	2.6e-88	96.67	copper-transporting ATPase PAA1, chloroplastic-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1HI09	2.2e-58	68.14	copper-transporting ATPase PAA1, chloroplastic-like isoform X2 OS=Cucurbita mosc...	[more]
A0A6J1HFH1	4.8e-58	71.58	copper-transporting ATPase PAA1, chloroplastic-like isoform X1 OS=Cucurbita mosc...	[more]
A0A6J1HV12	6.3e-58	67.65	copper-transporting ATPase PAA1, chloroplastic-like isoform X2 OS=Cucurbita maxi...	[more]

BLAST of CmaCh11G016490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988963.1	3.1e-91	98.88	copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita maxima]	[more]
KAG6588770.1	9.9e-90	97.21	Copper-transporting ATPase PAA1, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
KAG7022542.1	3.7e-89	98.30	Copper-transporting ATPase PAA1, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_022927930.1	5.4e-88	96.67	copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita moschata]	[more]
XP_023529553.1	8.6e-86	94.48	copper-transporting ATPase PAA1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh11G016490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33520.1	8.2e-26	40.61	P-type ATP-ase 1	[more]
AT4G33520.2	2.4e-25	39.30	P-type ATP-ase 1	[more]
AT4G33520.3	2.4e-25	39.30	P-type ATP-ase 1	[more]
AT5G64200.1	8.5e-23	90.57	ortholog of human splicing factor SC35	[more]
AT5G64200.2	8.5e-23	90.57	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 184..260 e-value: 5.8E-10 score: 49.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 200..255 e-value: 3.7E-16 score: 58.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 188..263 score: 14.197654
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 127..187 e-value: 1.8E-7 score: 31.5
IPR006121	Heavy metal-associated domain, HMA	PROSITE	PS50846	HMA_2	coord: 125..199 score: 13.635805
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 127..188 e-value: 2.42681E-10 score: 53.3785
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 198..258 e-value: 2.4E-17 score: 65.2
None	No IPR available	GENE3D	3.30.70.100		coord: 124..197 e-value: 8.9E-14 score: 53.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..112
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 200..255
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 200..255
IPR017969	Heavy-metal-associated, conserved site	PROSITE	PS01047	HMA_1	coord: 130..159
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 126..172
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 201..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G016490.1	CmaCh11G016490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding