CmaCh11G011830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Flap endonuclease 1
Location	Cma_Chr11: 6914194 .. 6923448 (-)
RNA-Seq Expression	CmaCh11G011830
Synteny	CmaCh11G011830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCTTCCTTGCTTCGTCTTCCAAAGCGGTTCCTTCTCTGCTACTGCGACGTCTTGCGATGGGCATTAAGGTATCTGCCTTCACTCTCTACATCATTTTCCTCTCCTTTGCTCTCCCACTCTGGTTTTCCCCTTTTCCATTTTCACATCCCTGCTTTTCTTAGGGTTTAACCAAGCTTTTAGCTGACAACGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATCGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTGTCAGTACCTCTTTCTCCAATTTTTCCTTTTTTTTTTTTTTTTTTACAGTTAAAAACTACTCTGGGCATCTCATATATTTGCGTGAACTAATGCAGATTGTCGTGGGAAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGGTTGGCTTTAGAAAAATTTATACATTTTTATTTGAATTTTAAAATTTGTGAATTATCTACTTGTTTTTGCTTGATATATTCCAGTTTTTCATGTTAATTTCATGTTTTTTAATGTCAAACTCTAGCCATTTGCAAGGGATGTTTAACCGGACTATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTGTAATTTCTTAGTGTCCTGGCATTTCAATTCCAAGTTTTGTCATGAAAATTTTGTCTGACACGGTTTTCTTTTCATGGGAACAAATATGCTCAGCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGGTAACTATGCTATCTCATTTATTCCTTTCAAAGGGGCAGTCATGATGGTTGTGCCTTATGTAAATTATGTATGCAGTTATTCAAAAAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTACTTTCATTCTTGTACTTTTGTTTTTTCTTCCTTGTAAAGCACGTAAGACAGAAAACTAATTCCAGCAACTGCCCCTTTTGTTATTCTAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTAGTTAACTGCTTTAACATTTTTCCCCAAGTACGTACATATTACATTGTAAATCGATTTACATACTCTCACAAATGATCACTAAATGGATTGGAGCAGCATGCAAATATTTTGGAAGTTGTATAATATGACAATCAATCACATGCATATTGTATAATTTGGGGTTAAACTTGTAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGTGACAATACACTATATTTCAGATGTTCGTTCAAGTAGTCCATTGCTTCAGTTGTAACATGATTGAGTACATTGCAATTGTTTTTGGATATTGCAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGCAAGTATCCCTCTCCTGCATGATAATGTGTCTTTGAATGTGAACCGATAAACTAAGAATCAAGGGGCAAATATTGACCTTCCTGTTACTAAAATGTAGGGACAGATTGAATGAAATACAGATTTGATAACTTTATTTGTGTACTCTATATATTTCAATGCTTCCAAGCACAATGAATTCTGCAATGTAAAGATTTAGCTAGCTATACATGTTTGTTCTCTCATTCCAATTTTAAATTTAGAATAAATTTAAATGTCATAAAACAAATTGTTCTTTCTCCAGGGATGCAATATTCTCTGATGAAATAAATTGTAGCATCTGCAAAAGCTACTTGAGTTTTTGATCTCGCCCTTTTTATTTAGGTGATGAAGATTTAGTTCTTCTCTTTATAACATTTTATTATTATGAATCCATGATATTCGGTCACCATCACCAACATATTTCTTTTGCCTTGTAGACTATTTTGGACACCCTGGAAAATCCTTTTTGATAGAAATAAGATTCCATACTTTAGTATGGATTGAACCGTTGGAATTTTGAATGTCAGATTTGGAACGTAACTGCAGTTTTGCTTTCACAATCTGTTTTCTCTTTCTCTTCACTGAAGAGTTCAAAGGTTGAGACCACTGAAGGAGCTATGGTCTGATGGAGAGTATATTGGCTCGCAAGTGTAGTATTATCAGTCCGTGTGTCCAATAGATCTTGATGAAAAAGAGAAATGAAGGGAGTTTTTGATTTTCAAAACACCTATCCAAGTTCCAATAGAATAATGTCATTATGGAGGGTGATTACGCTAAGACACGTATCCATGTTCCTCCCACGAATTTGGTCTTATCAACATAAAGCACACCTAGTTGCATGCTGAGGACGTTGATTTAAACGATGGCCTCCCAAAGATATCTGTTCATGAACCAATCTCATCAGTATCCCTAAATATCAAAGAAATTAAAGAGAAGTTCACTGAAATTAATTCCAATTTGTATACAAGAAAATGTTCTTCGGCCCCTTTGTCTTCCCAATTTCCAGTAACTTTTAACATTAATTCAGATGCGTTGGAAGAGTCTTGATCAACAATTTTGATACCAATTGATAATTAGGTGACGATTCATTATAATGGTTCAAAGGTCATGGTGAGCTTAAATAGTGTAGAGATTGAACAACAACGACATTCCCAAGTTTTAGATGATTTTATCTGAAGAGCTTTCGTCATTAAATCTTGATTCTCTGTTTCAAACTCTAAATAAGAAAGTCTTAGCTACCAAGGAAGATTTGGATATGATACTGAATGACTTATTGGTTAATTCGCCACATCTCCTTCCATCTTTGAAACATTTCATCTATAATTGAAGCTAGCTGTCAACATTTTTGTGAAACCTACCGTTGCTATCAGAGGGGATTGGCCTTGTTCGACAATGAAATCAATTCTTGGAATACTGGAGATTTGGGAGATTATTTTAGAAGTCTTAGCTTGAAGAAATTTTTGCAACACCATTACCTTGTGTTTGACCTCCATACTAAGACTTACATGAGGATAGGTAGTAAGGGAAATACTTCTAATGTTAATTAATTAGCAGTCAGTTGTACGACCTTTTGTGATTGTTGCCTTTATAATCATCTTGCTTTGTATTTTTGAGGTTAGGTGTTATTTTGTTAAACTGAAAATATCAAGGAGCAGTCATTTGAAAGGGTTTTTTTCGGACAATATTGTTCTTCATTTTATGTCTTGGTGTAATTGTTCAGATATTTTTCATTCTTATAGTTATGCAACACATTTGTCCAATTGGAGAAGTTTATTGTAACTCCTTTACATTGATGCTCTCTTCCCTCGTTTGTAGTTTCATACATCAACAAAAGTTTCTTATAAAACAAAACGCAAGCTAGGAGAAACTCTTCAAACTACTGGAGATACACTATTCCTACCAAGTATCTAGGACACTCTTTTCCACTCTTCCCCTTTTCTGCTACATGCTAAAAATCTTGTTTGACATTTTCCAATTATCTGCACCCAAGGGCTATATGACCTTTTACCCATGTCAATCGATTCATGACTCCCTTCATTGCTTCTAGTCTTACCAAGTACCTAGGAGACCCCCTCTTTCCCCATTGCCCTCATTCCATGTTTAGATCAGGGCTCATTCCATGTTTAGATCAGGGGATGCAATGGGGATTGGAGGCTGCTAGGGTTGGGGCATTGAGGGTAGGCCGGGTTCCCGACCTAGTAAAATGCATGCTTTTTTGTGGTAGGATCTATGAATTTAGGTGGATTTGATTTTGTAAGTTTTGCACACTAAATGAGTGTGTACCTGGATTTTTTTCCTTTTTTACCTGGGGTCCTTCGGTGCTTTAATTCTTATATTCGTTTTGAATTAATAAGAGGGGCTTGTTCTCAAAGTTTGTATATTTCAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTTCAAAGGTGATATGTCTCCATCTTAGTTTGGTTATTTACTTATCTATAGGAAATCAAGTTATAAATTATAGCTCGTATATATTTATAGCTGTATTTTCTCTTTTCCTTGTAGGTTTTGATTGCATTTTTTTTGCTTATCTAATTGGGCGTCTCTTTGTATGAATCTGATTCTTCTCTACCCTATGAAATATAAAAAATATTATGGTTCATACATAGCTTTATGGTATTAGAGTTGTGAAACCATTCAATTTGGAAAGGAAATCACCCTAAAAAGGTGAAGTTCTTCCTTTGGAAAATAGCGCATAAACCCATTAGCACAAGTGAAAATCTTCAAAATAGAATGTCCTACATGACCCTATTTCTAAATTGGGGTCCATTATACAAGAAAGGAAACGAATCACAAAGCCACTTAACTTATGCAATGCACATACGCTCAGAATTTGTAGACAATGATTCTCAATATAAACATAAGGTATCTCACATTTCCTAGGGAGAGAAATAATCTATTAGACATGACCTTAACGTACCACCCCTTCAAGAATCCAAAAGCCCTACTATGGAAAAACTTCATCATGACTTTTTTTTGGAACCTGTGGAAAAAATTAAATAAAAGAATATTCATGGAAAAGACATAGACTTATACAAAACTCTTCGTCAATGTTGTTTACCAAGCTATATCTTGGTGTAAACGGTCTAATATTTTTATTTCCTATACTTATACCTCTCTCATAAGAGAATTACATGTCACTTTTATAAGAGAGAGACTAACTAAATCTAAATCAATAGATAATCTAAATAAGTCTCTAGATACTGGGTAATCTAAATTTAAATAAATTCAACCAGATAAATTAGGGAGGTCAAGTACTTTCCTGATTGGTTCTCCTATTGACCATAAGTCGACATCAGAGATTGTTCCACAGTCACTTGGCATAGTAAGGAACAATTAGTTGTAGCTTGAAGTAGTACAGAAGTTGAGTTTCGATCACTAGTTCATGGGATTTGTGAAGGAATTTAGTTAAAAGGCCTTCTCATTGAACTAAAGGTCAAAATAGAAGACATCACAGAATTACCGTGTGATAACCAATCAATCATAGTTATTGCAATGAATTCAATACACCATGACGGAATAAAGAAGGTCGAGATAGATTGACACTTCGTCAGTGAGAAATTGAGACAAACACTATTACACTGAGATATGTACCTTCCCAATAAGTTGCAGATTTATTAACTAACGCTTTACAATGAATTCATCTTGATGGTTTAATTTCCAAGCTTGGCGTGACAAGCATGTACTATCCAACTTGAGGGGAGTGTAGAAAATCAAGATGTGAGTCAGGGCTTTATGTTTGGGATTGTTTCCGTGTAGATGTTTATAGTTGTATTTTTCTTTTCCTTAGGTTTAGATTAGTAGCAATGTTTGCTTATTTGATTCTCTTTGTATAAATCTGGTTTTTCTCCACTCAATCAAGTATATAAATATTATCCTTCATACATAGCTTCAGTTATCATTTACCAATAATTTGTTTCATTTCAGATTTTGGAGGAGCTAAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATTTGGGTTCTATATAGTTATATGTTTCATTGCCTCCTACTGATGTTGATGCTCAAGTTTTATTGTGCTGTTCCAGTTTTATATGTTCTGAACGTAGAGCCCTTATGCATTTACTCCACAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATACTAGAGAACATAAATAAAGAAAGGTGACCTTTTTCTAAAATTGAATGCAATTTTATCTTGAATATGCTCAAACTTGTTCACATAATTTGATGAATGCACGGTTTTACTTAATTTGTTGGATATGGTCTGGTTATTATGAATCTGAGATGATGTCCTAGCCAATTTGAATCTTGTTGAATGAGAAGCCTTCTATGTATCAGTATTGCATTGAATCCTTTGAGTAGTAGCCAGTGACTGTTTTAGATAATCTTGTGTAGAATTCTTCAATCTCGTCAGATATTGTTTAGCATATGTAGTGCAATCAGTTGGAGAATTTACTACCCTTCATGATTCTGTTTTCTAAATTATACTGTTCCTGTTTAAGGCATTGTTATCTTGTAAAGTAAGTAGATAGTCTTATCTTTCTCTTATATTTATCTCAGTTGAAGTATCTTTCAAATTGCTTTGATAAGAGCGTAGTGACCGGAAAGCTGTAAACTTGAGTTGTGCAACTTCAAAATATTTCTTATTAAACAAAGTCTATCTAGATGAGAAGGAAAGAATAACGGTACAACCCATGGCAGGTCCAAAGCTTTAAGTCGGGAGCTATATAGAAATAAAGTTAATTACAAGTTTTGTCCTTTGATTTTGAGTTGTTTCTGTTTGGTTTTTGAACTTTCAAAAGTGTTTTAGATCCTTGAACTTTCAAGTTTGTTTCTAATAGATTCTTGACAAATCCGACTATTATTTTTTAATTAATTAATCTATTAACTATAAGTTTGAATTATAGTTTAGTGGAACCCTATAAGTTCAATTTTATGTCTAATAAATCTATGAATTTTAAAAAATTTTAAAATTCAAGGATTAAATTTATAATTTATTGTAGAAATAATGCTGACCACATTGATATACAGATATATTGCTATCAGTTGGTAGATTTTGATAATAAATTGACTAAATTATAAAATTTGTCCTAAACTTTCATGATTGTGATTTAAAGTCCCTAGCTTTAAAAAGTTTATAACAAGTCACTAAACTTCCAACTTTCAATTGACAGGTTGCTAAATTTTCAAATTTGTATATAATGTGTCAAATTACAGAAGAGCAACAAAATACCGAATGCTTCTTGTTTCCCTTATTATTATCATTATTATTATTATTATTATTATGTTGTAAACAGGTACCAAATTCCAGAGGACTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGTAATTTAACTTTTCTGGTTTAAAAGTCATCTCCTGACTGTTTTCTTTCTTCATTTTATATATGTAGCACACACGAACATATTTTGATACTAAAGTTTTAATCCTCCCGCATGCACATGCTTGTTATGATATTAAAGTTGTATTCTCATATCTATTACAGGGTTTAATCTCATTGTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGTTTATCATCCTGATAATCTCAAATTTTATATCATACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCATGAAAGTCATTTAAATTAAATCTTCAAGAAAGTTTACGTCTCATACATCATTTTTTGTTCTTTCTCCAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGTAAGTGTTAACTATATACTTTCATTTATTTCTTAAAAATAAAATTTCTTCATCTCTTTGGCCGAGCGTGCTGTTCATTCCTCCTTTTCAGGATGGAGTCATTTTTCAAGCCAGTAACCAATCCTTCAGTTTCCACTAAGAGAAAGGTATATTGTTAGCTATCTACTGATATCTGATGTTAGGATTGATGAAATTTAACTTCCATTTTATCATTCTAATAAACCTATTAAACATCGAATTTTAAGGCCAACAATATTTTAATGGCATTATGACAGTTCTATCCAACCCCTCTGCAAATTTTCCTTAATCTTGAATTTGTTGATTTTTCATTTTTTGGAAACTGAAATTCAATTATGTTGATCTTCAACATCAACATTGATTTAAGCTTTACGGTTCATTGGTATTGACTATATTTTTCGTCCGACCATGCATAATCTGTCCAAAAGTACTTCTCTGCCTCTTTCTGCTAATTTACTTCAGACTCTCCATTTCTCTCTTTTATTTCAAATTACCTACAAAATCCATTAAACGAGAAAAATAATTCAAGTTCTTAAAGAACTGGTGGGATATAGAGACCTAATTGTCTCTACCTTTCTATACCGAATGACAGGTAACCAAATGTGTACTTAAGTCTCCTAAACCAGGAATCCAGCATAAATACTCTCCACAAGCTTTTTATCCGTCAAGGACAAAGGTCATTGGCAGCCTAGGGACGCCAATAGTAGACCATTCTTTCAAGTACTCAGGGTCAAAGCCATTAGTCATGGCTGTTTGCTTCGGCACATGAAGCTGAAAACGCTGGTGAAACTAGTTGCTTTGGTTTTTAGTGATGTACTTGAAATCCTCATCATCAATTTCCTTGAACCTTATTGTTCATCTTCAAATATATACATATGGAAACTATAATTAAGGAGCTCAAGGTGCTGGATTTGACAGTCCTGATTAATTAAAACCCACCCTGTAGCTCTATTACATTAAAAAAGTTGGTGTGTTGTGTAGAAGCAGTTTATGACGCATGATTCTGGAGTTTTTTTGGGGAAAAAAAGCGATTGCTAGAAATAAGACATTACACATCATAGGCAACACACTGATCAATCATTTTGCCGACTTTGATTTTTAGTTTTAGTTGTGGTGTAGTATTTATGATTAATGATCGTTGCTTTTATTAATGTACATTTGCTCTTTACATTTTCATTTGCATTGTGGCACCACATTTTTCTGCAACTATGACCCATTAATTAAAGTTGGGATTCTTGACTTCAGCAATCTTTACCTTTTATTTTATTTTATGTTATCATTTTTATTTTTACGATCAATATTATCTCTGTTTCACTTTGTATTTGTAATCCAACAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAGGAAGAGTTGGTTCCATCGCCACTGTTGAATTTGTGCAACGAACTTGCTGATTTTAAGTAACTTATAAGCTTTAGGTGGCTGCAAATTTAGGAAATAGTTGCATTATATGATATTAATGTTCTTGAATGATTGGTCTTGGTGCAATTTTAGGAAGTATATCTTCGAGTACTTGCGGGCATGCCTTGTGTGACTGCAATTTATTAGTTTTAAGTTGCAGGCCCTCTCAAGAATGATGATTTTGTTTCTGCTCTGCAACCTGTATATTTCTTAACTAAATGGATAGTGAAGTAAGATCTTATTGGTTTGCTTTTCCAATTCTTAGAACTCCTGGATTGATTGGAGAGGATAGTTGAGTTGCCAAATTTGAAAATTGAATTCATGAATCTCTCTATGTCGATTAGAAA

mRNA sequence

CGCCTTCCTTGCTTCGTCTTCCAAAGCGGTTCCTTCTCTGCTACTGCGACGTCTTGCGATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAACGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATCGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACTATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGTTATTCAAAAAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTTCAAAGATTTTGGAGGAGCTAAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATACTAGAGAACATAAATAAAGAAAGGTACCAAATTCCAGAGGACTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGTTTAATCTCATTGTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCAGTAACCAATCCTTCAGTTTCCACTAAGAGAAAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAGGAAGAGTTGGTTCCATCGCCACTGTTGAATTTGTGCAACGAACTTGCTGATTTTAAGTAACTTATAAGCTTTAGGTGGCTGCAAATTTAGGAAATAGTTGCATTATATGATATTAATGTTCTTGAATGATTGGTCTTGGTGCAATTTTAGGAAGTATATCTTCGAGTACTTGCGGGCATGCCTTGTGTGACTGCAATTTATTAGTTTTAAGTTGCAGGCCCTCTCAAGAATGATGATTTTGTTTCTGCTCTGCAACCTGTATATTTCTTAACTAAATGGATAGTGAAGTAAGATCTTATTGGTTTGCTTTTCCAATTCTTAGAACTCCTGGATTGATTGGAGAGGATAGTTGAGTTGCCAAATTTGAAAATTGAATTCATGAATCTCTCTATGTCGATTAGAAA

Coding sequence (CDS)

ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCTGACAACGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTTGGACGAAAAATCGCAATTGATGCCAGCATGAGTATCTATCAATTTCTTATTGTCGTGGGAAGAAGTGGGACTGAGATGTTGACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGGACTATAAGGCTTCTCGAAGCTGGAGTTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTTGCAAAACGTTATTCAAAAAGAGCAGATGCTACTGCAGACCTGGCAGATGCAATTGAGGTTGGAAACAAGGAGGACATTGAGAAATTCAGTAAAAGGACGGTCAAGGTTACAAAGCAGCACAATGATGACTGTAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCTAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTTTCAAAGATTTTGGAGGAGCTAAACCTTACCATGGATCAATTTGTCGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGACAGACTGCTTTAAAGCTTATCCGTCAACATGGGTCTATAGAAAATATACTAGAGAACATAAATAAAGAAAGGTACCAAATTCCAGAGGACTGGCCATTTCAAGAGGCCCGACAGCTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGATGAAGAAGGTTTAATCTCATTGTTGGTGAATGAGAATGGGTTCAATAGCGATAGAGTAACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCAGTAACCAATCCTTCAGTTTCCACTAAGAGAAAGGAGACATCAGAAAAGCCCACCAAACAAGCAATAACTAAGAAATCGAAGTCCAGTGGTGGTAAAAGAAAGTAG

Protein sequence

MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKETSEKPTKQAITKKSKSSGGKRK

Homology

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BLAST of CmaCh11G011830 vs. ExPASy Swiss-Prot
Match: O65251 (Flap endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=FEN1 PE=3 SV=2)

HSP 1 Score: 657.5 bits (1695), Expect = 9.1e-188
Identity = 329/382 (86.13%), Postives = 353/382 (92.41%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPP+LK+QELAKRYSKRADATADL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+EA SEAEAQCAALCK GKVY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+P+FLRHLMDPSSRKIPVMEFEV+KILEEL LTMDQF+DLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE ILEN+NKERYQIPE+WP+ EAR+LFKEP V TDEEQLDIKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300

Query: 301 TTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           T+PDEEG++  LVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N SV  KRKE
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 383
             E  TK A  KK+K +GG++K
Sbjct: 361 IPESTTKGAANKKTKGAGGRKK 382

[Close]

BLAST of CmaCh11G011830 vs. ExPASy Swiss-Prot
Match: C6TEX6 (Flap endonuclease 1 OS=Glycine max OX=3847 GN=FEN1 PE=2 SV=1)

HSP 1 Score: 652.5 bits (1682), Expect = 2.9e-186
Identity = 326/382 (85.34%), Postives = 355/382 (92.93%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKE KFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMF+RTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKRA+AT DL++A+E  N
Sbjct: 61  VTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALETAN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180
           KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPV+EAPSEAEAQCAALCK GKVY V SED
Sbjct: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYGVVSED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+P+FLRHLMDPSS+KIPVMEFEV+KILEELN+TMDQF+DLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGG TALKLIRQHGSIENI EN+NKERYQIP++WP+QEAR+LFKEPLV TDE++LDIKW
Sbjct: 241 GIGGLTALKLIRQHGSIENIPENLNKERYQIPDNWPYQEARRLFKEPLVITDEKELDIKW 300

Query: 301 TTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           ++PDEEGLI+ LVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKP  NPSV  KRKE
Sbjct: 301 SSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFFKPTANPSVPIKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 383
           T     K+   KK+K+ GGK+K
Sbjct: 361 TPVNNAKET-NKKTKAGGGKKK 381

[Close]

BLAST of CmaCh11G011830 vs. ExPASy Swiss-Prot
Match: B8AW67 (Flap endonuclease 1-A OS=Oryza sativa subsp. indica OX=39946 GN=FEN1a PE=3 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 1.5e-177
Identity = 313/382 (81.94%), Postives = 345/382 (90.31%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGR+IA+DASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKR DAT +L +A+E G+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180
           K+ IEKFSKRTVKVTKQHN++CKRLLRLMGVPV+EAP EAEA+CAALC    VYAVASED
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+PRFLRHLMDPSS+KIPVMEFEV+K+LEEL LTMDQF+DLCILSGCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIK 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE+ILENINK+RYQIPEDWP+QEAR+LFKEP V  D  +L  KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 300

Query: 301 TTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
             PDEEGL+  LV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV + SV  KRK+
Sbjct: 301 NAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLKRKD 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 383
           TSEKPTK    KK+K +GGK+K
Sbjct: 361 TSEKPTKAVANKKTKGAGGKKK 380

[Close]

BLAST of CmaCh11G011830 vs. ExPASy Swiss-Prot
Match: Q9SXQ6 (Flap endonuclease 1-A OS=Oryza sativa subsp. japonica OX=39947 GN=FEN1A PE=1 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 1.5e-177
Identity = 313/382 (81.94%), Postives = 345/382 (90.31%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGR+IA+DASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPDLKKQELAKRYSKR DAT +L +A+E G+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180
           K+ IEKFSKRTVKVTKQHN++CKRLLRLMGVPV+EAP EAEA+CAALC    VYAVASED
Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+PRFLRHLMDPSS+KIPVMEFEV+K+LEEL LTMDQF+DLCILSGCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIK 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE+ILENINK+RYQIPEDWP+QEAR+LFKEP V  D  +L  KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL--KW 300

Query: 301 TTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
             PDEEGL+  LV ENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV + SV  KRK+
Sbjct: 301 NAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLKRKD 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 383
           TSEKPTK    KK+K +GGK+K
Sbjct: 361 TSEKPTKAVANKKTKGAGGKKK 380

[Close]

BLAST of CmaCh11G011830 vs. ExPASy Swiss-Prot
Match: C5YUK3 (Flap endonuclease 1-A OS=Sorghum bicolor OX=4558 GN=FEN1-A PE=3 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 1.0e-175
Identity = 309/382 (80.89%), Postives = 343/382 (89.79%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAPK MKEQKFESYFGRKIAIDASMSIYQFLIVVGR+G E LTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGMETLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPPD+KK+ELAKR+SKR DAT DL +A+E G+
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKEELAKRFSKREDATNDLKEAVEAGD 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180
           K+ +EK SKRTVKVT QHNDDCKRLLRLMGVPV+EAPSEAEA+CAALCK  KV+AVASED
Sbjct: 121 KDAVEKLSKRTVKVTAQHNDDCKRLLRLMGVPVVEAPSEAEAECAALCKNDKVFAVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+PRFLRHLMDPSS+KIPVMEF+V+K+LEEL LTMDQF+DLCIL GCDYCDSI+
Sbjct: 181 MDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIK 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE+ILEN+NK+RYQIPEDWP+QEAR+LFKEP V  D  +L  KW
Sbjct: 241 GIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDVPEL--KW 300

Query: 301 TTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           T PDEEGLIS LV +NGFN DRVTKA+EKIK+AKNKSSQGR+ESFFKPV   S   KRKE
Sbjct: 301 TPPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPVATTSAPLKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 383
           TS+K +K A   K   +GGK+K
Sbjct: 361 TSDKTSKAAAANKKTKAGGKKK 380

[Close]

BLAST of CmaCh11G011830 vs. TAIR 10
Match: AT5G26680.2 (5'-3' exonuclease family protein )

HSP 1 Score: 657.5 bits (1695), Expect = 6.4e-189
Identity = 329/382 (86.13%), Postives = 353/382 (92.41%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPP+LK+QELAKRYSKRADATADL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+EA SEAEAQCAALCK GKVY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+P+FLRHLMDPSSRKIPVMEFEV+KILEEL LTMDQF+DLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE ILEN+NKERYQIPE+WP+ EAR+LFKEP V TDEEQLDIKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300

Query: 301 TTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRKE 360
           T+PDEEG++  LVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N SV  KRKE
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRKE 360

Query: 361 TSEKPTKQAITKKSKSSGGKRK 383
             E  TK A  KK+K +GG++K
Sbjct: 361 IPESTTKGAANKKTKGAGGRKK 382

[Close]

BLAST of CmaCh11G011830 vs. TAIR 10
Match: AT5G26680.1 (5'-3' exonuclease family protein )

HSP 1 Score: 643.3 bits (1658), Expect = 1.3e-184
Identity = 318/359 (88.58%), Postives = 338/359 (94.15%), Query Frame = 0


Query: 1   MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGE 60
           MGIKGLTKLLADNAP  MKEQKFESYFGRKIA+DASMSIYQFLIVVGR+GTEMLTNEAGE
Sbjct: 1   MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGE 60

Query: 61  VTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGN 120
           VTSHLQGMFNRTIRLLEAG+KPVYVFDGKPP+LK+QELAKRYSKRADATADL  AIE GN
Sbjct: 61  VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGN 120

Query: 121 KEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASED 180
           KEDIEK+SKRTVKVTKQHNDDCKRLLRLMGVPV+EA SEAEAQCAALCK GKVY VASED
Sbjct: 121 KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASED 180

Query: 181 MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDYCDSIR 240
           MDSLTFG+P+FLRHLMDPSSRKIPVMEFEV+KILEEL LTMDQF+DLCILSGCDYCDSIR
Sbjct: 181 MDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIR 240

Query: 241 GIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEEQLDIKW 300
           GIGGQTALKLIRQHGSIE ILEN+NKERYQIPE+WP+ EAR+LFKEP V TDEEQLDIKW
Sbjct: 241 GIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKW 300

Query: 301 TTPDEEGLISLLVNENGFNSDRVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSTKRK 360
           T+PDEEG++  LVNENGFN DRVTKA+EKIK AKNKSSQGR+ESFFKPV N SV  KRK
Sbjct: 301 TSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANSSVPAKRK 359

[Close]

BLAST of CmaCh11G011830 vs. TAIR 10
Match: AT1G29630.2 (5'-3' exonuclease family protein )

HSP 1 Score: 99.0 bits (245), Expect = 8.8e-21
Identity = 93/331 (28.10%), Postives = 158/331 (47.73%), Query Frame = 0


Query: 1   MGIKGLTKLLAD-NAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAG 60
           MGI+GL  LL     P  +KE +     G  +A+D    +++  +   R   + L  +  
Sbjct: 1   MGIQGLLPLLKSIMVPIHIKELE-----GCIVAVDTYSWLHKGALSCSRELCKGLPTK-- 60

Query: 61  EVTSHLQGMFNRTIRLLEAGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVG 120
               H+Q   +R   L   GVKP+ VFDG P  +K ++  KR   R +  A   +    G
Sbjct: 61  ---RHIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRKENLARALEHEANG 120

Query: 121 NKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASE 180
           N     +   + V ++     +  ++LR   V  + AP EA+AQ A L    +V A+ +E
Sbjct: 121 NSSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITE 180

Query: 181 DMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVSKILEELNLTMDQF-----VDLCILSGCD 240
           D D + FG  R +   MD     +   EF+ SK+ +  +L++  F     +++CILSGCD
Sbjct: 181 DSDLIPFGCLRII-FKMDKFGHGV---EFQASKLPKNKDLSLSGFSSQMLLEMCILSGCD 240

Query: 241 YCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPFQEARQLFKEPLVCTDEE 300
           Y  S+ G+G + A  LI +  S + +++++      +P   P  E  + FK  L+    +
Sbjct: 241 YLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVP---PLYE--ESFKRALLTFKHQ 300

Query: 301 QLDIKWTTPDEEGLISLL-VNEN-GFNSDRV 324
           ++      P+ E +I L  +++N G +SD V
Sbjct: 301 RV----YDPNAEDIIHLCDISDNLGEDSDFV 308

[Close]

BLAST of CmaCh11G011830 vs. TAIR 10
Match: AT1G01880.1 (5'-3' exonuclease family protein )

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-17
Identity = 73/248 (29.44%), Postives = 117/248 (47.18%), Query Frame = 0


Query: 19  KEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLL-E 78
           ++Q F+    +++A+D S  I Q    V          +   +  HL+  F RTI L  +
Sbjct: 16  QQQGFDFLRNKRVAVDLSFWIVQHETAV----------KGFVLKPHLRLTFFRTINLFSK 75

Query: 79  AGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGNKEDIEKFSKRTVKVTKQ 138
            G  PV+V DG P  LK Q    R+ + +         I+ G   +  K     V+    
Sbjct: 76  FGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWVR---- 135

Query: 139 HNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMD 198
              +C  LL L+G+PV++A  EAEA CA L   G V A  + D D+  FG+   ++ +  
Sbjct: 136 ---ECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDI-K 195

Query: 199 PSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDY-CDSIRGIGGQTALKLIRQHGS 258
           P+SR+ P   + +S I   L L     + + +L G DY    + GIG   AL+++R+  S
Sbjct: 196 PNSRE-PFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREF-S 243

Query: 259 IENILENI 265
            + +LE +
Sbjct: 256 EDQVLERL 243

[Close]

BLAST of CmaCh11G011830 vs. TAIR 10
Match: AT1G01880.2 (5'-3' exonuclease family protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-16
Identity = 73/248 (29.44%), Postives = 118/248 (47.58%), Query Frame = 0


Query: 19  KEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLL-E 78
           ++Q F+    +++A+D S  I Q    V          +   +  HL+  F RTI L  +
Sbjct: 16  QQQGFDFLRNKRVAVDLSFWIVQHETAV----------KGFVLKPHLRLTFFRTINLFSK 75

Query: 79  AGVKPVYVFDGKPPDLKKQELAKRYSKRADATADLADAIEVGNKEDIEKFSKRTVKVTKQ 138
            G  PV+V DG P  LK Q    R+ + +         I+ G   +  K     V+    
Sbjct: 76  FGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWVR---- 135

Query: 139 HNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMD 198
              +C+ LL L+G+PV++A  EAEA CA L   G V A  + D D+  FG+   ++ +  
Sbjct: 136 ---ECE-LLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDI-K 195

Query: 199 PSSRKIPVMEFEVSKILEELNLTMDQFVDLCILSGCDY-CDSIRGIGGQTALKLIRQHGS 258
           P+SR+ P   + +S I   L L     + + +L G DY    + GIG   AL+++R+  S
Sbjct: 196 PNSRE-PFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREF-S 242

Query: 259 IENILENI 265
            + +LE +
Sbjct: 256 EDQVLERL 242

The following BLAST results are available for this feature:

BLAST of CmaCh11G011830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65251	9.1e-188	86.13	Flap endonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=FEN1 PE=3 SV=2	[more]
C6TEX6	2.9e-186	85.34	Flap endonuclease 1 OS=Glycine max OX=3847 GN=FEN1 PE=2 SV=1	[more]
B8AW67	1.5e-177	81.94	Flap endonuclease 1-A OS=Oryza sativa subsp. indica OX=39946 GN=FEN1a PE=3 SV=1	[more]
Q9SXQ6	1.5e-177	81.94	Flap endonuclease 1-A OS=Oryza sativa subsp. japonica OX=39947 GN=FEN1A PE=1 SV=...	[more]
C5YUK3	1.0e-175	80.89	Flap endonuclease 1-A OS=Sorghum bicolor OX=4558 GN=FEN1-A PE=3 SV=1	[more]

BLAST of CmaCh11G011830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26680.2	6.4e-189	86.13	5'-3' exonuclease family protein	[more]
AT5G26680.1	1.3e-184	88.58	5'-3' exonuclease family protein	[more]
AT1G29630.2	8.8e-21	28.10	5'-3' exonuclease family protein	[more]
AT1G01880.1	1.6e-17	29.44	5'-3' exonuclease family protein	[more]
AT1G01880.2	1.7e-16	29.44	5'-3' exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006084	XPG/Rad2 endonuclease	PRINTS	PR00853	XPGRADSUPER	coord: 224..239 score: 52.93 coord: 82..101 score: 57.5 coord: 167..187 score: 47.77 coord: 28..42 score: 49.38 coord: 146..163 score: 61.28
IPR006084	XPG/Rad2 endonuclease	PANTHER	PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	coord: 1..375
IPR002421	5'-3' exonuclease	SMART	SM00475	53exo3	coord: 29..299 e-value: 0.0018 score: -79.1
IPR006086	XPG-I domain	SMART	SM00484	xpgineu	coord: 147..219 e-value: 1.9E-35 score: 133.7
IPR006086	XPG-I domain	PFAM	PF00867	XPG_I	coord: 147..234 e-value: 3.1E-31 score: 107.6
IPR006085	XPG, N-terminal	SMART	SM00485	xpgn3	coord: 1..108 e-value: 1.3E-55 score: 200.7
IPR006085	XPG, N-terminal	PFAM	PF00752	XPG_N	coord: 1..107 e-value: 3.6E-30 score: 104.4
IPR008918	Helix-hairpin-helix motif, class 2	SMART	SM00279	HhH_4	coord: 221..254 e-value: 5.0E-14 score: 62.6
None	No IPR available	GENE3D	3.40.50.1010		coord: 10..222 e-value: 5.4E-78 score: 263.4
None	No IPR available	GENE3D	1.10.150.20		coord: 223..286 e-value: 3.2E-31 score: 109.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 337..356
None	No IPR available	PANTHER	PTHR11081:SF9	FLAP ENDONUCLEASE 1	coord: 1..375
None	No IPR available	CDD	cd09907	H3TH_FEN1-Euk	coord: 222..289 e-value: 2.51016E-42 score: 140.76
None	No IPR available	CDD	cd09867	PIN_FEN1	coord: 4..332 e-value: 2.13999E-124 score: 357.094
IPR019974	XPG conserved site	PROSITE	PS00841	XPG_1	coord: 80..94
IPR019974	XPG conserved site	PROSITE	PS00842	XPG_2	coord: 150..164
IPR023426	Flap endonuclease 1	HAMAP	MF_00614	Fen	coord: 1..347 score: 148.270416
IPR036279	5'-3' exonuclease, C-terminal domain superfamily	SUPERFAMILY	47807	5' to 3' exonuclease, C-terminal subdomain	coord: 219..353
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 2..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011830.1	CmaCh11G011830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0043137	DNA replication, removal of RNA primer
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0008409	5'-3' exonuclease activity
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0004518	nuclease activity