CmaCh11G000790 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G000790
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionGolgin subfamily A member 6-like protein 2
LocationCma_Chr11: 380131 .. 381267 (+)
RNA-Seq ExpressionCmaCh11G000790
SyntenyCmaCh11G000790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTGTGCTCAAGCAAGGGTGGGAGCAATATTTGTGATGATGATGTTGGAGGATTGAAAGAAAAGATAAGGCTGCTTAGGGAGGAAGTGAGAGGAGTAATGTCTGAGATGGATAAAGAGGTCAAAGCCCATGAAAAGGACATGGTGGTGTTTGCATTTAAGGAAGCAGATTGGAAAACAGAGAAGAAGAAACTCAGAGAGGAGGTGAAGATGCTGAGGAAGAGGGTAAAAGAGAGGATGACAGAGATTGAAGAGGGAAATTTTGGAGAGAAGACTGCAACAGCATGGGAGATTGAAAGAACTCCAAATACCATCTTTGAGCAGGTACAACAGGAAAGAGCACGCAGAGATGAAGCCATTGAGAAATGGAAGCAACTTTATCACGCTATCAAGATTGAGCTCGATGACCTAATTCAGAGAACACATAATGGTATGCCCATTCTAAATTTCCTTTTGTTTCTAAATTTTATAGTCTCTCGTTTTAAGGTGATGATATATGTCTTAACCAATTAAACTAGGTTTGAGTTGAGAATTTAAGGTAAGTCGAGCACATTCGATTTTTGATCGGATCACTAACAGGCACTCAATACTTGCTTTGATAGGAGATGGATTGTACTGGGGAGCGAACGAGAGAACAGAAGCACTACAAACGGAATTGCTAGCAAAGGAGGAGACCATAAAGGCCCTCAAAGAACAAGTGGCTTCAATGGAGCAAGAAAAATACAAGAGAGTCACAGAAATTGACATACTGAGGCAAAGCTTAAGAATTATGACCAGTAAGAAGGAAAAATAGATAGACACCTTCCATAGCTGTGTTTGTAAGTAGCCTGCCAGTGAAGTAAGGAGCACGAAAACAGAAGTTCCAATGAAAAGCCAATTGAAAGTGTTACTAGAAGCAAATGCATCCAGGAAGCTATTAGTTTTGCACCCCCACCCTTAATTTCAACCCAACTGTTACTTTCATAATCATTTCGTTGGGATGGTCCAATAGGTAAACTTTTTTGTTCTATAGACTGCAATGTTGAGAAAGTTCCAAAAAAAAAGAGAAAAAAGGGGCTTATCCTGACAGGAAGAAAAAATGGCGCATCAAATGTTCTCATTGAAATTTAGTGATAGCTTAATTTCTCTCGATTC

mRNA sequence

ATGGGTGTGTGCTCAAGCAAGGGTGGGAGCAATATTTGTGATGATGATGTTGGAGGATTGAAAGAAAAGATAAGGCTGCTTAGGGAGGAAGTGAGAGGAGTAATGTCTGAGATGGATAAAGAGGTCAAAGCCCATGAAAAGGACATGGTGGTGTTTGCATTTAAGGAAGCAGATTGGAAAACAGAGAAGAAGAAACTCAGAGAGGAGGTGAAGATGCTGAGGAAGAGGGTAAAAGAGAGGATGACAGAGATTGAAGAGGGAAATTTTGGAGAGAAGACTGCAACAGCATGGGAGATTGAAAGAACTCCAAATACCATCTTTGAGCAGGTACAACAGGAAAGAGCACGCAGAGATGAAGCCATTGAGAAATGGAAGCAACTTTATCACGCTATCAAGATTGAGCTCGATGACCTAATTCAGAGAACACATAATGGAGATGGATTGTACTGGGGAGCGAACGAGAGAACAGAAGCACTACAAACGGAATTGCTAGCAAAGGAGGAGACCATAAAGGCCCTCAAAGAACAAGTGGCTTCAATGGAGCAAGAAAAATACAAGAGAGTCACAGAAATTGACATACTGAGGCAAAGCTTAAGAATTATGACCAGTAAGAAGGAAAAATAGATAGACACCTTCCATAGCTGTGTTTGTAAGTAGCCTGCCAGTGAAGTAAGGAGCACGAAAACAGAAGTTCCAATGAAAAGCCAATTGAAAGTGTTACTAGAAGCAAATGCATCCAGGAAGCTATTAGTTTTGCACCCCCACCCTTAATTTCAACCCAACTGTTACTTTCATAATCATTTCGTTGGGATGGTCCAATAGGTAAACTTTTTTGTTCTATAGACTGCAATGTTGAGAAAGTTCCAAAAAAAAAGAGAAAAAAGGGGCTTATCCTGACAGGAAGAAAAAATGGCGCATCAAATGTTCTCATTGAAATTTAGTGATAGCTTAATTTCTCTCGATTC

Coding sequence (CDS)

ATGGGTGTGTGCTCAAGCAAGGGTGGGAGCAATATTTGTGATGATGATGTTGGAGGATTGAAAGAAAAGATAAGGCTGCTTAGGGAGGAAGTGAGAGGAGTAATGTCTGAGATGGATAAAGAGGTCAAAGCCCATGAAAAGGACATGGTGGTGTTTGCATTTAAGGAAGCAGATTGGAAAACAGAGAAGAAGAAACTCAGAGAGGAGGTGAAGATGCTGAGGAAGAGGGTAAAAGAGAGGATGACAGAGATTGAAGAGGGAAATTTTGGAGAGAAGACTGCAACAGCATGGGAGATTGAAAGAACTCCAAATACCATCTTTGAGCAGGTACAACAGGAAAGAGCACGCAGAGATGAAGCCATTGAGAAATGGAAGCAACTTTATCACGCTATCAAGATTGAGCTCGATGACCTAATTCAGAGAACACATAATGGAGATGGATTGTACTGGGGAGCGAACGAGAGAACAGAAGCACTACAAACGGAATTGCTAGCAAAGGAGGAGACCATAAAGGCCCTCAAAGAACAAGTGGCTTCAATGGAGCAAGAAAAATACAAGAGAGTCACAGAAATTGACATACTGAGGCAAAGCTTAAGAATTATGACCAGTAAGAAGGAAAAATAG

Protein sequence

MGVCSSKGGSNICDDDVGGLKEKIRLLREEVRGVMSEMDKEVKAHEKDMVVFAFKEADWKTEKKKLREEVKMLRKRVKERMTEIEEGNFGEKTATAWEIERTPNTIFEQVQQERARRDEAIEKWKQLYHAIKIELDDLIQRTHNGDGLYWGANERTEALQTELLAKEETIKALKEQVASMEQEKYKRVTEIDILRQSLRIMTSKKEK
Homology
BLAST of CmaCh11G000790 vs. ExPASy Swiss-Prot
Match: Q8IIG7 (Uncharacterized protein PF11_0207 OS=Plasmodium falciparum (isolate 3D7) OX=36329 GN=PF11_0207 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 4.0e-04
Identity = 52/196 (26.53%), Postives = 103/196 (52.55%), Query Frame = 0

Query: 15  DDVGGLKEKIRLLREEVRGVMSEMDKEVKAHEKDMVVFAFKEADWKTEKKKLREEVKMLR 74
           +++  +KE+I+ ++EE++  + E  KEVK   K+ +    KE   K E K+++EE+K ++
Sbjct: 502 EEIKEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEEIKEEIKEV--KEEIKEVKEEIKEVK 561

Query: 75  KRVKERMTEIEEGNFGEKTATAWEIERTPNTIFEQVQQE-RARRDEAIEKWKQLYHAIKI 134
           + +KE   EI+E     K     EI+     + E++++E +    E  E+ K++   IK 
Sbjct: 562 EEIKEVKEEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEEVKEEIKEVKEEIKEVKEEIKE 621

Query: 135 ELDDLIQRTHNGDGLYWGANERTEALQTELLAKEETIKALKEQVASMEQEKYK-RVTEI- 194
           E+ + I+             E  + ++ E+   +E IK +KE++    +E+ K  + EI 
Sbjct: 622 EVKEEIKE----------VKEEIKEVKEEI---KEEIKEVKEEIKEEVKEEIKEEIKEIK 681

Query: 195 DILRQSLRIMTSKKEK 208
           + L+  +   T+K+EK
Sbjct: 682 EELKNDISSETTKEEK 682

BLAST of CmaCh11G000790 vs. TAIR 10
Match: AT3G23930.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13540.1); Has 10639 Blast hits to 7432 proteins in 646 species: Archae - 82; Bacteria - 826; Metazoa - 5047; Fungi - 759; Plants - 314; Viruses - 86; Other Eukaryotes - 3525 (source: NCBI BLink). )

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-25
Identity = 93/221 (42.08%), Postives = 128/221 (57.92%), Query Frame = 0

Query: 1   MGVCSSKGGSNICDDDVGGLKEKIRLLREEVRGVMSEMDKEVKAHEKDMVVFAFKEA--D 60
           MG C+SK        +  G++      +++ RG    + KE    EK M +   KEA  +
Sbjct: 1   MGGCTSK-------QERRGVRSVKETSKDQSRG-RRHLIKERDEREKVMFL-QLKEAERE 60

Query: 61  WKTEKKKLREEVKMLRKRVKERMTEIEEGNFGEKTATAWEIERTPNTIFEQVQQERARRD 120
           W+ E+KKLREEV+ LRK+++ER    EE     KT T  E E     + E++  ERA RD
Sbjct: 61  WRKERKKLREEVRRLRKKLEER----EEA----KTTTTEEREYW-KWVVEEMCVERAVRD 120

Query: 121 EAIEKWKQLYHAIKIELDDLIQRTHNGDG-------LYWGANERTEALQTELL-----AK 180
           EA+EKWKQLY AIK ELD LI  T +  G       L     E TEA + E+L      K
Sbjct: 121 EAVEKWKQLYLAIKNELDHLISHTTSSSGEAIMQRKLEEQEEEETEAKRVEVLRDEVRVK 180

Query: 181 EETIKALKEQVASMEQEKYKRVTEIDILRQSLRIMTSKKEK 208
           EET++ L+EQ+  M+++KY++  EID+LRQSLRI+ SKK+K
Sbjct: 181 EETVETLEEQIVLMDRQKYEKEREIDLLRQSLRILGSKKKK 203

BLAST of CmaCh11G000790 vs. TAIR 10
Match: AT4G13540.1 (unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23930.1); Has 4658 Blast hits to 3455 proteins in 431 species: Archae - 39; Bacteria - 387; Metazoa - 1842; Fungi - 436; Plants - 133; Viruses - 38; Other Eukaryotes - 1783 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-21
Identity = 75/203 (36.95%), Postives = 115/203 (56.65%), Query Frame = 0

Query: 9   GSNICDDDVGGLKEKIRLLREEVRGVMSEMDKEVKAHEKDMVVFAFKEADWKTEKKKLRE 68
           G +   D+    K +I++   E R    E  +E+   E+ ++     E +W+ E+K+LRE
Sbjct: 2   GGSTSKDERNSSKRRIKVKANEQR--RRETRRELDEKERVILALKMAETEWRKERKRLRE 61

Query: 69  EVKMLRKRVKERMTEIEEGNFGEKTATAWEIERTPNTIFEQVQQERARRDEAIEKWKQLY 128
           EVK LR++++E+    EEG   +     WE       + EQ+  ERA R+EA+E+WKQLY
Sbjct: 62  EVKRLRQKMEEK----EEGKAKQH---EWE------WVVEQMCLERAVREEAVERWKQLY 121

Query: 129 HAIKIELDDLIQRTHNGDGLYWGANER----TEALQTELLAKEETIKALKEQVASMEQEK 188
            AIK ELDDLI  T+ G+ L     E      + L+ E+ A+ ETI+ LK ++  ME+++
Sbjct: 122 FAIKNELDDLIHTTY-GEALRQKPQEEVAKAVQELRKEVKARGETIETLKGRINLMEKQQ 181

Query: 189 YKRVTEIDILRQSLRIMTSKKEK 208
             +  EID+LRQSLRI+     K
Sbjct: 182 NGKEREIDLLRQSLRILGGSSGK 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8IIG74.0e-0426.53Uncharacterized protein PF11_0207 OS=Plasmodium falciparum (isolate 3D7) OX=3632... [more]
Match NameE-valueIdentityDescription
AT3G23930.17.1e-2542.08unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT4G13540.14.8e-2136.95unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsi... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 121..141
NoneNo IPR availableCOILSCoilCoilcoord: 156..183
NoneNo IPR availableCOILSCoilCoilcoord: 56..83
NoneNo IPR availablePANTHERPTHR37226GOLGIN FAMILY A PROTEINcoord: 1..206
NoneNo IPR availablePANTHERPTHR37226:SF4GOLGIN FAMILY A PROTEINcoord: 1..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G000790.1CmaCh11G000790.1mRNA