CmaCh11G000300 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G000300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Nuclear transcription factor Y subunit C
Location	Cma_Chr11: 141365 .. 143862 (+)
RNA-Seq Expression	CmaCh11G000300
Synteny	CmaCh11G000300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTCCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGAGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGACGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAGGTGTTTGTGCGATTCGAGTCGTTAAGGCACAATTAAAGATTCAATTGTTAAGCTTCATCTTGTGTTCTATCTAGATTTGTGTCGTGATCAGGATGAATTGAATTCTTACTTTTTCGCGATTTACCCGATTTCATATTCACTTCTTCCTTTATCGGGAGATTGCATGCTTGTTCGTTTCCTTTTTCCTGACCGAGTAATCGCCCGGCAAGAACGTGCTGATTTGTTGAGTGGTTCTCATGATTCTATCTGAATTCATTCGTCTCTTGGGAATGGTTTGGTTTAAAGCTTCATCTTCGGATTTTGCTTTCTAATAATTTTTGGAAAAGTTTCTCCTTTCTTCGATGAATCTCAACCTTATAAAAATAACCATCTCCTTTGGCCTTTGCTTGCTTGACATTCTTTTTAGTTCCGATGTATGAATTTCCCGGCAACTATCTTATCAGTAGCTTCACCCTTCTTTTGTATCTTCTTTTTTCACGTAACGAAGATCTCTCTGTCTCTTACTGAAACAAAAGTTTTCACATTAATAACAATAGCATAGGGTGAGAATGGTTGTGAAGGTCTTTGGATGAGAATGGTCGTGACAGGTTATCTTGTTGTTTTGCTTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTTCATTGAAAAATTTGAAAGAAGTTGGTAGAGCTCAACAAATGAGGCTTTCACCATGTGTATGTTAGAGTATCAAAATTTGTTTGTAATTGGGTTTGTGTGGCAACTAGGGATCAGTGGGTTCAAATGAAGGGATGAATGAGGTCGTAGAAGGATTATGACTCCTCTTCTTCTTGGTTTCTTCCCTGATATTGCAGGGCATCTTGGAATGAACCAACCAAATGTTGTACTCATAAAATTGAGAGGATACTTTTGTGGAGGTGTTGAAATGAAATAGTTTGGTCTAGTTTTGGAGGCATTTCAAATTTAGTTGGGCCACGATGATTTGGTGAAATCATCATATTGTGAGCTTCTGTAGTTAGATGGTTTTGATGTGTAGAAACATGGAGAATTCTCCATACAAGCTACAGTTTGGTTCCAGAGAAAGAAAGGAAAAACATGTCCCATGCTTCTTCTGTTCTGTTCTGAATGGAAATACTTCTCCCTATGCACGGAGTAGGGAGTAGCAGAAGAGAAATGGTTGTTTGGTCTTCTTAAATTGAGAGATTTAATTATAAGGCCAACCTCTTTTTAGCTACACTCTGATCTGAACATATATGTATATCACATATATGCTGTATGTTTTCCATGTTAGGACCAACCAATTACTGATATTCGAAACTATGTCCAACTTGTTTTTGTCATTCTTAGCTTTTCCTTCCGTCTTCAAGAACAGGTTCTGATTCTGATGTTTGTTTCCCTGCAGCTAAGGTAAGGTAAGGTAAGCAATTCTTGTGTGTAGATGATGATGATGATCCTGCTGTGTGGTGCAATGAAGGGGGAAAAAACTGATGATGCTTTTCCATGGCGTAAAAGGAAGTGTATTTTTCTTTTATGTTTCCTTATTTTTTTCAAATGAGGTTAACTTAGAAAGTTGTATAAACTTGAACTACATGTCGTGGAATTGACATTACTTACTGTTCTTAACGTGCTGCTGTTTCAACACATTTTTTCTACTTTGCATGCCATTCATTCACCTCTTCATCTTCTTTTGATATAGACATGAGTGGTGCAACCGGTTTTGTATCTAGATTTGTAGGTTTCTGATGATGACCCATGGCGCCATGACAGCAACCCGTCCTGCTTCAAGTGCATGCATGCTTTGA

mRNA sequence

ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTCCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGAGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGACGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTTTCTGATGATGACCCATGGCGCCATGACAGCAACCCGTCCTGCTTCAAGTGCATGCATGCTTTGA

Coding sequence (CDS)

ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTCCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGAGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGACGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTTTCTGATGATGACCCATGGCGCCATGACAGCAACCCGTCCTGCTTCAAGTGCATGCATGCTTTGA

Protein sequence

MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSTWQPSAEDGSYASGGNSGQGNLDGQRFLMMTHGAMTATRPASSACML

Homology

[Close]

BLAST of CmaCh11G000300 vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 4.1e-93
Identity = 189/231 (81.82%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 3   NNNQAQSSPYPPPPPPPQAPVPA----PHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKN 62
           NN Q   S    PPPPP   + A      +HHLLQQQQQQLQ+FW++QRQEIEQVNDFKN
Sbjct: 4   NNQQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVNDFKN 63

Query: 63  HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND 122
           HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND
Sbjct: 64  HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND 123

Query: 123 IAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TASGVPYYYPPMGQPAGAPGGM 182
           IAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TASGVPYYYPPMGQPAG PGGM
Sbjct: 124 IAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-PGGM 183

Query: 183 MIGRPAMDPIGVYAQPPSQAWQSTWQPS---AEDGSYASGGNSGQGNLDGQ 224
           MIGRPAMDP GVY QPPSQAWQS WQ S    +D SY SGG+SGQGNLDGQ
Sbjct: 184 MIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQ 233

[Close]

BLAST of CmaCh11G000300 vs. ExPASy Swiss-Prot
Match: Q9FMV5 (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 4.3e-90
Identity = 187/245 (76.33%), Postives = 194/245 (79.18%), Query Frame = 0


Query: 3   NNNQAQSSP---YPPP-------PPPPQAPVP-----APHFHHLLQQQQQQLQMFWSFQR 62
           NNN  Q  P   YPP        PPPP             +HHLLQQQQQQLQMFW++QR
Sbjct: 6   NNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQR 65

Query: 63  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 122
           QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE
Sbjct: 66  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 125

Query: 123 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPYY 182
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPYY
Sbjct: 126 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYY 185

Query: 183 YPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSTWQPSA---EDGSYASGGNSGQG 224
           YPPMGQPA  PGGMMIGRPAMDP GVYAQPPSQAWQS WQ SA   +D SY SGG+SG G
Sbjct: 186 YPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHG 245

[Close]

BLAST of CmaCh11G000300 vs. ExPASy Swiss-Prot
Match: A6BLW4 (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.1e-59
Identity = 140/239 (58.58%), Postives = 156/239 (65.27%), Query Frame = 0


Query: 13  PPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQ--VNDFKNHQLPLARIKKIM 72
           P P  P     PA   HHLLQQQQ QLQ FW++QRQE E+   +DFKNHQLPLARIKKIM
Sbjct: 20  PVPGVPGAGGPPAVPHHHLLQQQQAQLQAFWAYQRQEAERASASDFKNHQLPLARIKKIM 79

Query: 73  KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 132
           KADEDVRMISAEAP+LFAKACELFILELTIRSWLHAEENKRRTLQ+ND+AAAI RTD+FD
Sbjct: 80  KADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVFD 139

Query: 133 FLVDIVPRDEIKDEAG------LGGMVGAT-----ASGVPYYYPPMGQPAGAPGGMMIGR 192
           FLVDIVPR+E K+E G       GG  GA      A+G+PYYYPPMGQPA       +  
Sbjct: 140 FLVDIVPREEAKEEPGSALGFAAGGPAGAVGAAGPAAGLPYYYPPMGQPAPMMPAWHV-- 199

Query: 193 PAMDPIGVYAQPPSQAWQSTWQPSAEDGSYASGGNSGQGNLDGQRFLMMTHGAMTATRP 239
           PA DP          AWQ    P  + G+  S    GQ    G       HG   A+ P
Sbjct: 200 PAWDP----------AWQQGAAPDVDQGAAGSFSEEGQQGFAG-------HGGAAASFP 239

[Close]

BLAST of CmaCh11G000300 vs. ExPASy Swiss-Prot
Match: Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.5e-52
Identity = 122/192 (63.54%), Postives = 138/192 (71.88%), Query Frame = 0


Query: 18  PPQAPVPAPHFHHLLQQQQ--QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADED 77
           P  +  PA H  H  QQQQ  QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADED
Sbjct: 26  PTGSDHPAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADED 85

Query: 78  VRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 137
           VRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDI
Sbjct: 86  VRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDI 145

Query: 138 VPRDEIKDEA-GLGGMVGATASGVPY-YYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPS 197
           VPR++++DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P 
Sbjct: 146 VPREDLRDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP- 205

Query: 198 QAWQSTWQPSAE 206
             WQ   QP  E
Sbjct: 206 -MWQ---QPGPE 211

[Close]

BLAST of CmaCh11G000300 vs. ExPASy Swiss-Prot
Match: Q8L4B2 (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NFYC9 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.1e-51
Identity = 117/189 (61.90%), Postives = 134/189 (70.90%), Query Frame = 0


Query: 28  FHHLLQQQQ-----QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAE 87
           FH + QQQQ     QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADEDVRMISAE
Sbjct: 43  FHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAE 102

Query: 88  APILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 147
           AP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDIVPR++++
Sbjct: 103 APVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLR 162

Query: 148 DEA----GLGGMVGATASGVPYYYPPMG-QPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQ 207
           DE       G +  A A+G PY Y P G  P G P GM++G P     G Y   P    Q
Sbjct: 163 DEVLGSIPRGTVPEAAAAGYPYGYLPAGTAPIGNP-GMVMGNPG----GAYPPNPYMG-Q 222

[Close]

BLAST of CmaCh11G000300 vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 )

HSP 1 Score: 342.4 bits (877), Expect = 2.9e-94
Identity = 189/231 (81.82%), Postives = 197/231 (85.28%), Query Frame = 0


Query: 3   NNNQAQSSPYPPPPPPPQAPVPA----PHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKN 62
           NN Q   S    PPPPP   + A      +HHLLQQQQQQLQ+FW++QRQEIEQVNDFKN
Sbjct: 4   NNQQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVNDFKN 63

Query: 63  HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND 122
           HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND
Sbjct: 64  HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKND 123

Query: 123 IAAAITRTDIFDFLVDIVPRDEIKDEAGL--GGMVGA-TASGVPYYYPPMGQPAGAPGGM 182
           IAAAITRTDIFDFLVDIVPRDEIKDEA +  GGMV A TASGVPYYYPPMGQPAG PGGM
Sbjct: 124 IAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAG-PGGM 183

Query: 183 MIGRPAMDPIGVYAQPPSQAWQSTWQPS---AEDGSYASGGNSGQGNLDGQ 224
           MIGRPAMDP GVY QPPSQAWQS WQ S    +D SY SGG+SGQGNLDGQ
Sbjct: 184 MIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQ 233

[Close]

BLAST of CmaCh11G000300 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 332.4 bits (851), Expect = 3.0e-91
Identity = 187/245 (76.33%), Postives = 194/245 (79.18%), Query Frame = 0


Query: 3   NNNQAQSSP---YPPP-------PPPPQAPVP-----APHFHHLLQQQQQQLQMFWSFQR 62
           NNN  Q  P   YPP        PPPP             +HHLLQQQQQQLQMFW++QR
Sbjct: 6   NNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQR 65

Query: 63  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 122
           QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE
Sbjct: 66  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 125

Query: 123 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPYY 182
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPYY
Sbjct: 126 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYY 185

Query: 183 YPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSTWQPSA---EDGSYASGGNSGQG 224
           YPPMGQPA  PGGMMIGRPAMDP GVYAQPPSQAWQS WQ SA   +D SY SGG+SG G
Sbjct: 186 YPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHG 245

[Close]

BLAST of CmaCh11G000300 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 332.4 bits (851), Expect = 3.0e-91
Identity = 187/245 (76.33%), Postives = 194/245 (79.18%), Query Frame = 0


Query: 3   NNNQAQSSP---YPPP-------PPPPQAPVP-----APHFHHLLQQQQQQLQMFWSFQR 62
           NNN  Q  P   YPP        PPPP             +HHLLQQQQQQLQMFW++QR
Sbjct: 6   NNNNQQPPPTSVYPPGSAVTTVIPPPPSGSASIVTGGGATYHHLLQQQQQQLQMFWTYQR 65

Query: 63  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 122
           QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE
Sbjct: 66  QEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 125

Query: 123 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE------AGLGGMVGATASGVPYY 182
           ENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+EIK+E       G GGMV   ASGVPYY
Sbjct: 126 ENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYY 185

Query: 183 YPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSTWQPSA---EDGSYASGGNSGQG 224
           YPPMGQPA  PGGMMIGRPAMDP GVYAQPPSQAWQS WQ SA   +D SY SGG+SG G
Sbjct: 186 YPPMGQPA-VPGGMMIGRPAMDPSGVYAQPPSQAWQSVWQNSAGGGDDVSYGSGGSSGHG 245

[Close]

BLAST of CmaCh11G000300 vs. TAIR 10
Match: AT1G54830.2 (nuclear factor Y, subunit C3 )

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-53
Identity = 122/192 (63.54%), Postives = 138/192 (71.88%), Query Frame = 0


Query: 18  PPQAPVPAPHFHHLLQQQQ--QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADED 77
           P  +  PA H  H  QQQQ  QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADED
Sbjct: 26  PTGSDHPAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADED 85

Query: 78  VRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 137
           VRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDI
Sbjct: 86  VRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDI 145

Query: 138 VPRDEIKDEA-GLGGMVGATASGVPY-YYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPS 197
           VPR++++DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P 
Sbjct: 146 VPREDLRDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP- 205

Query: 198 QAWQSTWQPSAE 206
             WQ   QP  E
Sbjct: 206 -MWQ---QPGPE 211

[Close]

BLAST of CmaCh11G000300 vs. TAIR 10
Match: AT1G54830.1 (nuclear factor Y, subunit C3 )

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-53
Identity = 122/192 (63.54%), Postives = 138/192 (71.88%), Query Frame = 0


Query: 18  PPQAPVPAPHFHHLLQQQQ--QQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADED 77
           P  +  PA H  H  QQQQ  QQLQ FW  Q +EIE+  DFKNH LPLARIKKIMKADED
Sbjct: 26  PTGSDHPAYHQIHQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADED 85

Query: 78  VRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 137
           VRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAA+TRTDIFDFLVDI
Sbjct: 86  VRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDI 145

Query: 138 VPRDEIKDEA-GLGGMVGATASGVPY-YYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPS 197
           VPR++++DE  G  G   ATA+G PY Y PP   P G P GM++G P   P   Y   P 
Sbjct: 146 VPREDLRDEVLGGVGAEAATAAGYPYGYLPPGTAPIGNP-GMVMGNPGAYPPNPYMGQP- 205

Query: 198 QAWQSTWQPSAE 206
             WQ   QP  E
Sbjct: 206 -MWQ---QPGPE 211

The following BLAST results are available for this feature:

BLAST of CmaCh11G000300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMP0	4.1e-93	81.82	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FMV5	4.3e-90	76.33	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
A6BLW4	5.1e-59	58.58	Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9ZVL3	3.5e-52	63.54	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q8L4B2	5.1e-51	61.90	Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of CmaCh11G000300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48590.1	2.9e-94	81.82	nuclear factor Y, subunit C1	[more]
AT5G63470.1	3.0e-91	76.33	nuclear factor Y, subunit C4	[more]
AT5G63470.2	3.0e-91	76.33	nuclear factor Y, subunit C4	[more]
AT1G54830.2	2.5e-53	63.54	nuclear factor Y, subunit C3	[more]
AT1G54830.1	2.5e-53	63.54	nuclear factor Y, subunit C3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 60..123 e-value: 2.6E-17 score: 62.8
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 27..138 e-value: 5.3E-46 score: 157.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 33..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 1..223
None	No IPR available	PANTHER	PTHR10252:SF107	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4	coord: 1..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G000300.1	CmaCh11G000300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity