CmaCh09G012740 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh09G012740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr09: 8739214 .. 8739507 (+)
RNA-Seq ExpressionCmaCh09G012740
SyntenyCmaCh09G012740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCAACAATCGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTTAACTTTTTCAAATTCAGAAGAGGTAGAAAGGAAGATCACAGCGACCATAGTGGCTGTTGGGACGAGATGCCAAGATCGAGTAAGGTATGGCCGAGCGATGAGGACAAAATGCATCGTTGGGTTGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTATATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCTGCCTGTGACACAAAACTCAATTAG

mRNA sequence

ATGGGAGGCAACAATCGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTTAACTTTTTCAAATTCAGAAGAGGTAGAAAGGAAGATCACAGCGACCATAGTGGCTGTTGGGACGAGATGCCAAGATCGAGTAAGGTATGGCCGAGCGATGAGGACAAAATGCATCGTTGGGTTGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTATATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCTGCCTGTGACACAAAACTCAATTAG

Coding sequence (CDS)

ATGGGAGGCAACAATCGGTCGAAGAAAGCTCACTCATCTTTCTCGATCTTTAACTTTTTCAAATTCAGAAGAGGTAGAAAGGAAGATCACAGCGACCATAGTGGCTGTTGGGACGAGATGCCAAGATCGAGTAAGGTATGGCCGAGCGATGAGGACAAAATGCATCGTTGGGTTGCTGAACCTGGCATTGATAGAAAAGCTAAGGATTATATTGACAGGATCTATCGAAACCGTGTTCTTGAATCTGAGCGACAAACTGTTACTTTACCTGCCTGTGACACAAAACTCAATTAG

Protein sequence

MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHSDHSGCWDEMPRSSKVWPSDEDKMHRWVAEPGIDRKAKDYIDRIYRNRVLESERQTVTLPACDTKLN
Homology
[Close]
BLAST of CmaCh09G012740 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 1  MGGNNRSKKAHSS--FSIFNFFKFRRGRKEDHSDHSGCWDEMPRSSKVWPSDEDKMHRWV 60
          MGG NRS   HSS  FS+F+FFK RR  +    +  G WD+   + K   SDEDK + WV
Sbjct: 1  MGGKNRS---HSSKRFSLFSFFKTRRSHR---VEADGSWDDFGYTRKAMASDEDKRY-WV 60

Query: 61 AEPGIDRKAKDYIDRIYRNRVLESERQTVT 89
          AEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 AEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]
BLAST of CmaCh09G012740 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-11
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 37 WDEMPRSSKVWPSDEDKMHRWVAEPGIDRKAKDYIDRIYRNRVLESERQTVTLPACDT 95
          WD++  + K W SDEDK + WVAEPGIDRKA  +I + + +RV ESERQ  TLP C +
Sbjct: 17 WDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQ--TLPPCQS 71

The following BLAST results are available for this feature:
BLAST of CmaCh09G012740 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh09G012740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05858.11.6e-1451.11unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.14.7e-1155.17unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 1..88
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G012740.1CmaCh09G012740.1mRNA