CmaCh09G003940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh09G003940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein FAM33A
Location	Cma_Chr09: 1667985 .. 1672207 (+)
RNA-Seq Expression	CmaCh09G003940
Synteny	CmaCh09G003940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGAAGGAGCTTCAAATTTAGAGAGCGCGAAAACCCTAGCAGAGAGAGGATGGCGCTCGATCGTCTTCATCAACATCATCAAGCAGCCGATGGATTGACGAACTTATTCACGAAGGCCAATCACGATCTCTCGGTTGTTCAATACAGGCTCGAGAAGGAGTTTCAGCAAATCTATCCTGACAGCGTAAGAGCAACACGATCTTCTTCTTCTCGTTTATTGAATGGAGGCAGTTATTAATTTAAGAAGGAATTTCTAAGGCTCGAAATGAATGTAGAATTGCTTATGTCTCTCTTCGCTGTTGGTAATTCATAGTTCTAGTACTAGATCTTTGAGCTTAATGTAGAATTATTCCATTCTACAGCAAAAAAGCATCATAGACTCTTTCTATTTTCTTAATCGATGCACTGTTTAGTTTGAGCGCGAAGTTCAAGATCTGGAGCTCGATTTTGAACTATTTGGTTCTCTCTTTGTGTTATTCACTGTACTAATACAAGATCACGAGCTTAGTGTAGGATTGTTTCATTCTTCAGCGTAAGAGCATCATAGACTTTCTATTTTCTTAATCGAGGCACTGTTTAGTTTGAGCATGAAGTTCAAGATCTGGAGCTTAATTTTGAACTATTTTGTTCTCTTTGCTGCTATTCACTGTACTAGTACAAGGTCACAAGCTTAATGTAGAATTATATCATTCTTCAGCGTAAGAGCATCATAGACTCTCTATTTTCTTAGTCGAGGTACTGTTTAGTTTTATGACGAAGTTCAAGATCTGGAGCTCAATGTCGAACTATTTTGTTTTCTCTTTGCTGTTATTCGCTGTATTAATACAAGATCTCGAGCTTGATGTAGAATTGTTCAATTCTACATTGTAGGAGCAAGTAGTCAATCCTGACAGAGTAAGAGCAACATACGTTTGAATTGAACTATTTTGTTTTCTCTGCTTCTAGACTTCTGAGCGGAGGCACTATTTTAATTGAGGAGGACATAGAAGATGTTGAGCATAATGAAGAGTTATTTCATTATCTTTTGCTATTAGCATTTGATAAGTAGTATCACAAGATCTTGAGCTTAACGACGAATTATTTCATTCTACAATGTTAGAGCAAATAAATCCTGATAGAGTCTGGGCAACATAGTTATTTTCAAGGGTCGAGTCACTAGTTTTCATTTCAGTATTTGGTTTGAGGAGGAAGTACTCAATCTTGAGCTTAATGAGGAGTTCTTTCATTTTTCAATTAGAACCGCAGTACTATTACAAGATTTTGAGCTTAACGTAGAATTGTTTTCTCCTCTCTTGCGCGTCAGTTTATTTCATAGTGCTAGCCAAAAATTTGTTGTAATTCTTGATTTTAAAGGTTCGCCGTTTAATATTGTTCAGAGAATGGACTATTGAACTTTCAGATTGAAGTTTTCGGAGAATTTTGTCATCCACAATTTTTCTTCATTTTCGAACTTCTGACTATATTGAGCTTTTTGATCTTTGATAAAACGTGTGATTAAAAATATCCGTTGGTTTCTCTACAATGCATGCAACCATGTGACAGTGATATTGGATTCAAACACTCTTAATGACAGCGATTGTCAAGTCTTTGTTTGACGGTTGAGATTGCCTCTTAAAACATGTAGTGGGGACGGGGCTATCTCGTTATACAAAGTATTCGTCGTCTTGGCACAAAGTTAACCACAGATTTATTTGGAATTCGATCTCAGATTATCCTTCATATTCTTTCTGGAAAACATGAATACGAATCTGTTGTTGCTCAACTGGTGGTTTTCATTCAAGGTTTTGTACATTATTTGCAGGCGAATCCAATGAAGTTAGCTTTAAGGATAAAGAAGATACGGGATGATATATCAACCTTGAAAGAGCAGTGTCGCAAAGTTTTGATGGCCAAACAGGTATCTTTCTGCCTTTACTTTTTCCAGATAGGTATTGACTTGAGGAAACACACGCATTTAACCTGCAAGACTTCATGCTCTGTACTTGCTAAGTTTTTTTTTTTTTTTTCAAGAATTAGTTCTGCAACTCCAAAAATTCACTTATATGTCCAAAAATAAATAAATACTCCATTTCACTTAGATTCCATGCAATGAAATGATATATTATGCTTAAAATAATGAAAATATGAAGTTTGAGCTTAGGAAATGTGATGTCTGATGATAGTAGGATGAATGTATTTGGTGTGTAGAAATGTGACTTTGATTTTGATTTATATATAATTTAAAATATAATGGTATTTTTCATAAGATATAATTACATCGAGAATATTTTGTTCAATATATTACCTACAATGAATTTCAAATAAATAAATCTTAATGTTTATTAACTATTTAGTTTTTAGTTTGTTTTTGAAATTTATGCTTGTTTTCTCCATTTTTCTTATCGTGGTTTTCACTATTCTTTTTTAGTAAAATAGTAATATTTAAATTCTTAAATAACTTACCGATGAAAAAGTAGTGTGTTTGAGTAAATGTCTTGTTCATTGGTGCCTCTTTTGCATTTTCATCGGAGAACAAGTACTGAATTTATTCTTGTTCTGCAACTGAGATTGAAGATTTCATTACCTACTGCTAAATTATGCAAAGATGACGCGCTGTTCAAATGCAGGATGTAATTGATAAGGCTCGGACTGTTCTTGTTGGGAACAGAAACATGCTACGCAAAATGCAAGCATCCATGGGCAAACCCTTTGTCAGCGATGACGATGATCCTGCATTTGTGCAATTCAAGCAGGTATCCATTGTAACACAGTGAAATGAACATTCTTGGAATTTTTTTTCTCAAGTGCTCTGTCATTTGCTTTATGTAAAAGGGTTGCAATTTCCAGGTGGTGCTTATAGTTTTTGTACCATTTGCCAGCAAGCATCCAATATTAAATATGCAAAAGGCTTTACTTACGATTGGATATCCACATTAGATGGTCTGTGGGTATTTCGATCTTTTGGATAAAGCTTACACAATCAAAATGTCTCGCCCTCTCCATGTAGAAGCGTCGTGTTTTGTAGTACTTGCTGTGTCATTTTTCAATGCTAAACCACATCCTGAATTTGTCTTCTGCAGATCACTGAAGAGTGGACAACACAAGTTCAATCAAAAATTGGTAAGAGGATTCTTTTCAAGCTTTCTTGCAATTGATGTTTAGACCTATGTGTTTTGAATTCTAGCTTACAATATGCTTAAAAATATTGTTTGGTCTTAATATTAATGACGAATCCTCTTAGCTTATGAATTTTTTTAAAAGTTTATAGTGTAAATATAAAAGTTTATAGATTAATATATACAGATTTCGTGTGGATGACTCTAAAAAGTAGTGATGTTTGCCTTTCCATGTAGAAACTAGAAAGTTAGGTAGTTTGATTTTTTTTTTCTTATTTAGCTTAATGATTAATGATTATATCTGATGTTTAATAATTGATGTCTTATTCATTAAGTTTGGATTTAGATTTAAATTGGGTTCATGTTTTTCATTCAATGTTGTATTAATGAGAGGTAACGTAGGGGAAGATGGCCAAGAGGACGCCGAGTCTAGTGACGTCAACAAGTTGCTATTCTCGGCTGTAGTGCAGGAATAATTCCAAACTATGCCAGGTATCTCTCTACCTAATTCCTTGTCCCACCCTTCCATCTACTAAAATCAAAATTATCGACTTATTTATCAATATTGACAAATTTCTAAAAAAAAAAATCCATGAAGCAAATGTTATTTAAAATTAATGAATAAACATTTACTTACTCAATGATAGTATGTATGTGTTAATAATAATTTTGGCATTTTCTTAATATTTTTGCGTTCAATTGAAAATATTAATATCAAAGCTTTCCATTTACAGATGCTTTAAAACAAATGCCAATACTTCCAAATGATTTCTTGTATGCTATATTTTAAGATGATTTTAACTTTTCTGTTGGCTCATACAGGTATTTTCATGACATACGAGACCATGAAGGAGAATCTGTGCACACAATTCACTTGAAGACGCTAAAGATGTCGAGAGGTTAAATGGCATGCTTAGCACACCTTGTGAGCCAAATGTAACTTCACTATGACATTCAATGAACAACATGAATTTGACTGATTCTGAAACAATATACAACGAATCTTAAAGCAGCAAAAACCCTGCGATCCATTCGCAAGCTGACTGCTCGATTTTAATGGAAGCTGCACTGGACGTTGGTTATGAGATTTAATAAAAATAATAATGACAAATTATAGTTGACTTGAT

mRNA sequence

GCGGAAGGAGCTTCAAATTTAGAGAGCGCGAAAACCCTAGCAGAGAGAGGATGGCGCTCGATCGTCTTCATCAACATCATCAAGCAGCCGATGGATTGACGAACTTATTCACGAAGGCCAATCACGATCTCTCGGTTGTTCAATACAGGCTCGAGAAGGAGTTTCAGCAAATCTATCCTGACAGCGCGAATCCAATGAAGTTAGCTTTAAGGATAAAGAAGATACGGGATGATATATCAACCTTGAAAGAGCAGTGTCGCAAAGTTTTGATGGCCAAACAGGATGTAATTGATAAGGCTCGGACTGTTCTTGTTGGGAACAGAAACATGCTACGCAAAATGCAAGCATCCATGGGCAAACCCTTTGTCAGCGATGACGATGATCCTGCATTTGTGCAATTCAAGCAGATCACTGAAGAGTGGACAACACAAGTTCAATCAAAAATTGGGGAAGATGGCCAAGAGGACGCCGAGTCTAGTGACGTCAACAAGTTGCTATTCTCGGCTGTAGTGCAGGAATAATTCCAAACTATGCCAGGTATTTTCATGACATACGAGACCATGAAGGAGAATCTGTGCACACAATTCACTTGAAGACGCTAAAGATGTCGAGAGGTTAAATGGCATGCTTAGCACACCTTGTGAGCCAAATGTAACTTCACTATGACATTCAATGAACAACATGAATTTGACTGATTCTGAAACAATATACAACGAATCTTAAAGCAGCAAAAACCCTGCGATCCATTCGCAAGCTGACTGCTCGATTTTAATGGAAGCTGCACTGGACGTTGGTTATGAGATTTAATAAAAATAATAATGACAAATTATAGTTGACTTGAT

Coding sequence (CDS)

ATGGCGCTCGATCGTCTTCATCAACATCATCAAGCAGCCGATGGATTGACGAACTTATTCACGAAGGCCAATCACGATCTCTCGGTTGTTCAATACAGGCTCGAGAAGGAGTTTCAGCAAATCTATCCTGACAGCGCGAATCCAATGAAGTTAGCTTTAAGGATAAAGAAGATACGGGATGATATATCAACCTTGAAAGAGCAGTGTCGCAAAGTTTTGATGGCCAAACAGGATGTAATTGATAAGGCTCGGACTGTTCTTGTTGGGAACAGAAACATGCTACGCAAAATGCAAGCATCCATGGGCAAACCCTTTGTCAGCGATGACGATGATCCTGCATTTGTGCAATTCAAGCAGATCACTGAAGAGTGGACAACACAAGTTCAATCAAAAATTGGGGAAGATGGCCAAGAGGACGCCGAGTCTAGTGACGTCAACAAGTTGCTATTCTCGGCTGTAGTGCAGGAATAA

Protein sequence

MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRDDISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQITEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE

Homology

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BLAST of CmaCh09G003940 vs. ExPASy Swiss-Prot
Match: Q8WVK7 (Spindle and kinetochore-associated protein 2 OS=Homo sapiens OX=9606 GN=SKA2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04
Identity = 28/88 (31.82%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 14 DGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSA---NPMKLALRIKKIRDDISTLKEQCR 73
          D L  +F KA  DL  +QYRLE E +  +PDSA   NP+ L   +  I+    TL  + +
Sbjct: 6  DKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFK 65

Query: 74 KVLMAKQDVIDKARTVLVGNRNMLRKMQ 99
           V + +++   +    +    NM++K+Q
Sbjct: 66 PVAVEQKESKSRICATVKKTMNMIQKLQ 93

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BLAST of CmaCh09G003940 vs. ExPASy TrEMBL
Match: A0A6J1IP41 (Protein FAM33A OS=Cucurbita maxima OX=3661 GN=LOC111477290 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.7e-80
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD
Sbjct: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI
Sbjct: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 157
           TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE
Sbjct: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 156

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BLAST of CmaCh09G003940 vs. ExPASy TrEMBL
Match: A0A6J1F6V9 (Protein FAM33A OS=Cucurbita moschata OX=3662 GN=LOC111442663 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 151/156 (96.79%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           M LD LHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD
Sbjct: 1   MGLDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTLKEQCR+VLMAKQDVIDKARTVLVGNRNM+ KMQASMGKPFVSDDDDPAFVQFKQI
Sbjct: 61  DISTLKEQCREVLMAKQDVIDKARTVLVGNRNMVHKMQASMGKPFVSDDDDPAFVQFKQI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 157
           TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE
Sbjct: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 156

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BLAST of CmaCh09G003940 vs. ExPASy TrEMBL
Match: A0A6J1IQK7 (Protein FAM33A OS=Cucurbita maxima OX=3661 GN=LOC111477290 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.6e-77
Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD
Sbjct: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI
Sbjct: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 157
           TEEWTTQVQSKI  DGQEDAESSDVNKLLFSAVVQE
Sbjct: 121 TEEWTTQVQSKI--DGQEDAESSDVNKLLFSAVVQE 154

[Close]

BLAST of CmaCh09G003940 vs. ExPASy TrEMBL
Match: A0A6J1FBS9 (Protein FAM33A OS=Cucurbita moschata OX=3662 GN=LOC111442663 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.8e-75
Identity = 149/156 (95.51%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           M LD LHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD
Sbjct: 1   MGLDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTLKEQCR+VLMAKQDVIDKARTVLVGNRNM+ KMQASMGKPFVSDDDDPAFVQFKQI
Sbjct: 61  DISTLKEQCREVLMAKQDVIDKARTVLVGNRNMVHKMQASMGKPFVSDDDDPAFVQFKQI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 157
           TEEWTTQVQSKI  DGQEDAESSDVNKLLFSAVVQE
Sbjct: 121 TEEWTTQVQSKI--DGQEDAESSDVNKLLFSAVVQE 154

[Close]

BLAST of CmaCh09G003940 vs. ExPASy TrEMBL
Match: A0A6J1CJF1 (Protein FAM33A OS=Momordica charantia OX=3673 GN=LOC111011710 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.8e-68
Identity = 135/154 (87.66%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           M L  LHQHHQAADGL NLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKL  RIKKIRD
Sbjct: 1   MGLHHLHQHHQAADGLANLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLVSRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTL+EQCR++LMAKQDVIDKARTVLVGNRNML+KMQASMG P VSD DD AF QFK+I
Sbjct: 61  DISTLQEQCREILMAKQDVIDKARTVLVGNRNMLQKMQASMGIPLVSDLDDHAFAQFKKI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVV 155
           TEEWTTQVQSKIG+DGQEDA+S+DVNKLLFSAVV
Sbjct: 121 TEEWTTQVQSKIGDDGQEDADSNDVNKLLFSAVV 154

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BLAST of CmaCh09G003940 vs. NCBI nr
Match: XP_022977128.1 (spindle and kinetochore-associated protein 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD
Sbjct: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI
Sbjct: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 157
           TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE
Sbjct: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 156

[Close]

BLAST of CmaCh09G003940 vs. NCBI nr
Match: XP_023534877.1 (spindle and kinetochore-associated protein 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD
Sbjct: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTLKEQCR+VLMAKQDVIDKARTVLVGNRNML KMQASMGKPFVSDDDDPAFVQFKQI
Sbjct: 61  DISTLKEQCREVLMAKQDVIDKARTVLVGNRNMLHKMQASMGKPFVSDDDDPAFVQFKQI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 157
           TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE
Sbjct: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 156

[Close]

BLAST of CmaCh09G003940 vs. NCBI nr
Match: XP_022935897.1 (spindle and kinetochore-associated protein 2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 298.1 bits (762), Expect = 4.4e-77
Identity = 151/156 (96.79%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           M LD LHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD
Sbjct: 1   MGLDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTLKEQCR+VLMAKQDVIDKARTVLVGNRNM+ KMQASMGKPFVSDDDDPAFVQFKQI
Sbjct: 61  DISTLKEQCREVLMAKQDVIDKARTVLVGNRNMVHKMQASMGKPFVSDDDDPAFVQFKQI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 157
           TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE
Sbjct: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 156

[Close]

BLAST of CmaCh09G003940 vs. NCBI nr
Match: XP_022977129.1 (spindle and kinetochore-associated protein 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 297.4 bits (760), Expect = 7.4e-77
Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD
Sbjct: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI
Sbjct: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 157
           TEEWTTQVQSKI  DGQEDAESSDVNKLLFSAVVQE
Sbjct: 121 TEEWTTQVQSKI--DGQEDAESSDVNKLLFSAVVQE 154

[Close]

BLAST of CmaCh09G003940 vs. NCBI nr
Match: KAG6591515.1 (hypothetical protein SDJN03_13861, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296.2 bits (757), Expect = 1.7e-76
Identity = 150/156 (96.15%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MALDRLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60
           M LD LHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD
Sbjct: 1   MGLDHLHQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRD 60

Query: 61  DISTLKEQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQI 120
           DISTLKEQCR+VLMAKQDVIDKARTVLVGNRNM+ KMQASMGKPFVSDDDDPAFVQFKQI
Sbjct: 61  DISTLKEQCREVLMAKQDVIDKARTVLVGNRNMVHKMQASMGKPFVSDDDDPAFVQFKQI 120

Query: 121 TEEWTTQVQSKIGEDGQEDAESSDVNKLLFSAVVQE 157
           TEEWTTQVQSKIGEDGQEDAE SDVNKLLFSAVVQE
Sbjct: 121 TEEWTTQVQSKIGEDGQEDAECSDVNKLLFSAVVQE 156

[Close]

BLAST of CmaCh09G003940 vs. TAIR 10
Match: AT2G24970.1 (unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 162.5 bits (410), Expect = 2.7e-40
Identity = 82/148 (55.41%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 7   HQHHQAADGLTNLFTKANHDLSVVQYRLEKEFQQIYPDSANPMKLALRIKKIRDDISTLK 66
           + HHQA D L N+F++A+HDL+VV  +L+KEFQQ+YP +ANPMKL  RIKK+++D++ LK
Sbjct: 4   NHHHQAVDNLLNVFSRASHDLTVVHSKLDKEFQQMYPANANPMKLIQRIKKLQEDVTLLK 63

Query: 67  EQCRKVLMAKQDVIDKARTVLVGNRNMLRKMQASMGKPFVSDDDDPAFVQFKQITEEWTT 126
            QC  +L AKQD+IDKA+T LVGN N+++KM AS+G+    D DD A   F QI +EWT 
Sbjct: 64  HQCLDLLSAKQDLIDKAQTTLVGNCNLIQKMNASLGESTNGDTDD-ALADFNQIIDEWTM 123

Query: 127 QVQSK-IGEDGQEDAESSDVNKLLFSAV 154
           QV+S+ +GE   EDA+  D+NK+LFSA+
Sbjct: 124 QVRSRTVGE--TEDADKEDINKMLFSAI 148

The following BLAST results are available for this feature:

BLAST of CmaCh09G003940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WVK7	3.9e-04	31.82	Spindle and kinetochore-associated protein 2 OS=Homo sapiens OX=9606 GN=SKA2 PE=...	[more]

BLAST of CmaCh09G003940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IP41	7.7e-80	100.00	Protein FAM33A OS=Cucurbita maxima OX=3661 GN=LOC111477290 PE=3 SV=1	[more]
A0A6J1F6V9	2.1e-77	96.79	Protein FAM33A OS=Cucurbita moschata OX=3662 GN=LOC111442663 PE=3 SV=1	[more]
A0A6J1IQK7	3.6e-77	98.72	Protein FAM33A OS=Cucurbita maxima OX=3661 GN=LOC111477290 PE=3 SV=1	[more]
A0A6J1FBS9	9.8e-75	95.51	Protein FAM33A OS=Cucurbita moschata OX=3662 GN=LOC111442663 PE=3 SV=1	[more]
A0A6J1CJF1	6.8e-68	87.66	Protein FAM33A OS=Momordica charantia OX=3673 GN=LOC111011710 PE=3 SV=1	[more]

BLAST of CmaCh09G003940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977128.1	1.6e-79	100.00	spindle and kinetochore-associated protein 2 isoform X1 [Cucurbita maxima]	[more]
XP_023534877.1	1.8e-78	98.72	spindle and kinetochore-associated protein 2 isoform X1 [Cucurbita pepo subsp. p...	[more]
XP_022935897.1	4.4e-77	96.79	spindle and kinetochore-associated protein 2 isoform X1 [Cucurbita moschata]	[more]
XP_022977129.1	7.4e-77	98.72	spindle and kinetochore-associated protein 2 isoform X2 [Cucurbita maxima]	[more]
KAG6591515.1	1.7e-76	96.15	hypothetical protein SDJN03_13861, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh09G003940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24970.1	2.7e-40	55.41	unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042091	Ska2, N-terminal	PFAM	PF16740	SKA2	coord: 10..117 e-value: 3.5E-39 score: 133.0
None	No IPR available	GENE3D	6.10.250.1380		coord: 10..124 e-value: 4.8E-24 score: 86.5
IPR026762	Spindle and kinetochore-associated protein 2	PANTHER	PTHR32017	SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 2	coord: 12..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh09G003940.1	CmaCh09G003940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0000278	mitotic cell cycle
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000940	outer kinetochore
cellular_component	GO:0005876	spindle microtubule
molecular_function	GO:0008017	microtubule binding