CmaCh08G006540 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G006540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase subunit beta''
Location	Cma_Chr08: 3786323 .. 3786839 (+)
RNA-Seq Expression	CmaCh08G006540
Synteny	CmaCh08G006540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTTGCTACCACCTGAAAAAGTCAAAAGAAATTCTAAGAAAAGGAAAAATGAGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTCTTTTGTTTTTGTTCGACCTGTAATCATTCATATATGAACTAGCCGACGGTATCAATTTAGTAACATCCCACAAGATCTATATTTATTGCAAGAAAGGGAGAATCTGGAGCTTAGAGTTATCAGTTCTATCCTTAAATAGAAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCAGACTTGTTTATTGTTGGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCCCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGCAATTTCCTACGAATAGACTTAGTGAAAACCGAGACTTCGTATATCAGAAAAAGGCAAGATCCAGCAGGTTCACGATTGATCTTTCATAATGAGGCAGATCGCACCAACCCATATCAATCCATTTTTTGCTAG

mRNA sequence

ATGGCATCTTGCTACCACCTGAAAAAGTCAAAAGAAATTCTAAGAAAAGGAAAAATGAGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTCTTTTGTTTTTGTTCGACCTCCGACGGTATCAATTTAGTAACATCCCACAAGATCTATATTTATTGCAAGAAAGGGAGAATCTGGAGCTTAGATTCAGACTTGTTTATTGTTGGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCCCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGCAATTTCCTACGAATAGACTTAGTGAAAACCGAGACTTCGTATATCAGAAAAAGGCAAGATCCAGCAGGTTCACGATTGATCTTTCATAATGAGGCAGATCGCACCAACCCATATCAATCCATTTTTTGCTAG

Coding sequence (CDS)

ATGGCATCTTGCTACCACCTGAAAAAGTCAAAAGAAATTCTAAGAAAAGGAAAAATGAGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTCTTTTGTTTTTGTTCGACCTCCGACGGTATCAATTTAGTAACATCCCACAAGATCTATATTTATTGCAAGAAAGGGAGAATCTGGAGCTTAGATTCAGACTTGTTTATTGTTGGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCCCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGCAATTTCCTACGAATAGACTTAGTGAAAACCGAGACTTCGTATATCAGAAAAAGGCAAGATCCAGCAGGTTCACGATTGATCTTTCATAATGAGGCAGATCGCACCAACCCATATCAATCCATTTTTTGCTAG

Protein sequence

MASCYHLKKSKEILRKGKMRFMSSGSHLPRKSLLFLFDLRRYQFSNIPQDLYLLQERENLELRFRLVYCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRTNPYQSIFC

Homology

[Close]

BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-27
Identity = 72/118 (61.02%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 48  PQDLYLLQERENLELRFR--LVY--------------------CWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR    ++Y                      LNWDRDKKSSSIE+A
Sbjct: 800 PQD--LLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEDA 859

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDL K++T+YIRKR+DP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 860 RASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESDRTNINPFFSIY 915

[Close]

BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: B2XWN9 (DNA-directed RNA polymerase subunit beta'' OS=Fagopyrum esculentum subsp. ancestrale OX=180217 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-21
Identity = 60/116 (51.72%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEA 107
           PQD  LLQER+ ++LR                     +LV     LNWD DKKSSSIEE+
Sbjct: 792 PQD--LLQERDKVQLRVVNYILSGNGKPIRGISDTSIQLVRTCLVLNWDHDKKSSSIEES 851

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRTNPYQSIF 142
           RASFVEV TN ++R+FLRIDLVK+  SY  KR DP+GS L+  NE+DR NP+ SI+
Sbjct: 852 RASFVEVKTNDMMRDFLRIDLVKSTISYAGKRNDPSGSGLLSDNESDRMNPFYSIY 905

[Close]

BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: Q9BBS7 (DNA-directed RNA polymerase subunit beta'' OS=Lotus japonicus OX=34305 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-20
Identity = 70/165 (42.42%), Postives = 94/165 (56.97%), Query Frame = 0


Query: 8   KKSKEILRKGKMRFMSSGSHLPRKSLLFLFDLRRYQFSN-------IPQDLYLLQERENL 67
           K SKE  +K   R++   +   +K  + +  +  Y  ++        PQDL+  +E +NL
Sbjct: 723 KNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLF--KEWDNL 782

Query: 68  ELR--------------------FRLVYCW--LNWDRDKKSSSIEEARASFVEVSTNGLV 127
           EL+                     +LV     LNW+ D+KSSSIEEA ASFVEVSTNGL+
Sbjct: 783 ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 842

Query: 128 RNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADR--TNPYQSIF 142
           R FLRIDLVK+  SYIRKR DP+ S LI +NE+DR   NP+ SI+
Sbjct: 843 RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 885

[Close]

BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: Q8HVY3 (DNA-directed RNA polymerase subunit beta'' OS=Glycine max OX=3847 GN=rpoC2 PE=3 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 62/117 (52.99%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEA 107
           PQD++  QER+NLEL+                     +LV     LNWD+DKK SSIE A
Sbjct: 796 PQDMF--QERDNLELKVINYILSGNGKSIRGISDTSIQLVRTCLVLNWDQDKKFSSIENA 855

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSI 141
            ASFVE+S  GLVR FLRIDLVK+  SYIRKR +P GSR I  NE+DRT  NP+ SI
Sbjct: 856 HASFVEISIKGLVRYFLRIDLVKSHISYIRKRNNPPGSRFILDNESDRTTINPFFSI 910

[Close]

BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-20
Identity = 63/119 (52.94%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEA 107
           PQD  LLQE++NL+LR                     +LV     LNWD+DKKSSSIEEA
Sbjct: 798 PQD--LLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTCLVLNWDQDKKSSSIEEA 857

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYI-RKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RA+FVE+STNGL+R+FLRI+LVK   SYI RKR DP+GS  I +N +DRT  NP+  I+
Sbjct: 858 RAAFVEISTNGLIRDFLRINLVKFHISYIGRKRNDPSGSEPISNNGSDRTNINPFYPIY 914

[Close]

BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A2H4T1Y3 (DNA-directed RNA polymerase subunit beta'' OS=Cucurbita maxima OX=3661 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 796 PQD--LLQERDNLELRVINYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 855

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 856 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFFSIY 911

[Close]

BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A6H0EWD1 (DNA-directed RNA polymerase subunit beta'' OS=Nothoalsomitra suberosa OX=386201 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 796 PQD--LLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 855

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 856 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFFSIY 911

[Close]

BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A0S2IHI7 (DNA-directed RNA polymerase OS=Cucurbita pepo var. texana OX=37651 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 800 PQD--LLQERDNLELRVINYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 859

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 860 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFFSIY 915

[Close]

BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A0S2IFZ6 (DNA-directed RNA polymerase OS=Cucurbita pepo subsp. fraterna OX=37649 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 800 PQD--LLQERDNLELRVINYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 859

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 860 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFFSIY 915

[Close]

BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A0S2IGZ0 (DNA-directed RNA polymerase OS=Cucurbita pedatifolia OX=37647 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 800 PQD--LLQERDNLELRVINYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 859

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 860 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFFSIY 915

[Close]

BLAST of CmaCh08G006540 vs. NCBI nr
Match: ALO22570.1 (RpoC2 [Cucurbita pepo subsp. fraterna] >ALO22633.1 RpoC2 [Cucurbita pepo subsp. ovifera] >ALO22679.1 RpoC2 [Cucurbita pepo var. ozarkana] >ALO22739.1 RpoC2 [Cucurbita pepo subsp. pepo] >ALO22839.1 RpoC2 [Cucurbita pepo var. texana])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 800 PQD--LLQERDNLELRVINYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 859

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 860 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFFSIY 915

[Close]

BLAST of CmaCh08G006540 vs. NCBI nr
Match: ALO22869.1 (RpoC2 [Cucurbita pedatifolia])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 800 PQD--LLQERDNLELRVINYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 859

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 860 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFFSIY 915

[Close]

BLAST of CmaCh08G006540 vs. NCBI nr
Match: ALO22384.1 (RpoC2 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 800 PQD--LLQERDNLELRVINYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 859

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 860 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFCSIY 915

[Close]

BLAST of CmaCh08G006540 vs. NCBI nr
Match: YP_009447525.1 (RNA polymerase beta'' subunit [Cucurbita moschata] >ATY69966.1 RNA polymerase beta'' subunit [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 796 PQD--LLQERDNLELRVINYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 855

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 856 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFCSIY 911

[Close]

BLAST of CmaCh08G006540 vs. NCBI nr
Match: YP_009505070.1 (RNA polymerase beta'' subunit [Cucurbita pepo] >AWX90360.1 RNA polymerase beta'' subunit [Cucurbita pepo])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26
Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLV--YCWLNWDRDKKSSSIEEA 107
           PQD  LLQER+NLELR                     +LV     LNWDRDKKSSSIEEA
Sbjct: 796 PQD--LLQERDNLELRVINYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEA 855

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRT--NPYQSIF 142
           RASFVEVSTNGLVRNFLRIDLVK++TSYIRKRQDP+GS LIF+NE+DRT  NP+ SI+
Sbjct: 856 RASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRQDPSGSGLIFNNESDRTNINPFFSIY 911

[Close]

BLAST of CmaCh08G006540 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-13
Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 48  PQDLYLLQERENLELR--------------------FRLVYCW--LNWDRDKKSSSIEEA 107
           PQDL+  +E++N++LR                     +LV     LNWD   K+SS+EE 
Sbjct: 796 PQDLF--REKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNWD---KNSSLEEV 855

Query: 108 RASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRTNPYQSI 141
           RA FVEVST GL+++F+RI LVK+  SYIRKR +   S LI    AD  NP+ SI
Sbjct: 856 RAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLI---SADHMNPFYSI 902

The following BLAST results are available for this feature:

BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	2.3e-27	61.02	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
B2XWN9	4.2e-21	51.72	DNA-directed RNA polymerase subunit beta'' OS=Fagopyrum esculentum subsp. ancest...	[more]
Q9BBS7	1.2e-20	42.42	DNA-directed RNA polymerase subunit beta'' OS=Lotus japonicus OX=34305 GN=rpoC2 ...	[more]
Q8HVY3	1.6e-20	52.99	DNA-directed RNA polymerase subunit beta'' OS=Glycine max OX=3847 GN=rpoC2 PE=3 ...	[more]
B1NWE0	2.7e-20	52.94	DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2...	[more]

BLAST of CmaCh08G006540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H4T1Y3	1.2e-26	65.25	DNA-directed RNA polymerase subunit beta'' OS=Cucurbita maxima OX=3661 GN=rpoC2 ...	[more]
A0A6H0EWD1	1.2e-26	65.25	DNA-directed RNA polymerase subunit beta'' OS=Nothoalsomitra suberosa OX=386201 ...	[more]
A0A0S2IHI7	1.2e-26	65.25	DNA-directed RNA polymerase OS=Cucurbita pepo var. texana OX=37651 GN=rpoC2 PE=3...	[more]
A0A0S2IFZ6	1.2e-26	65.25	DNA-directed RNA polymerase OS=Cucurbita pepo subsp. fraterna OX=37649 GN=rpoC2 ...	[more]
A0A0S2IGZ0	1.2e-26	65.25	DNA-directed RNA polymerase OS=Cucurbita pedatifolia OX=37647 GN=rpoC2 PE=3 SV=1	[more]

BLAST of CmaCh08G006540 vs. NCBI nr


Match Name	E-value	Identity	Description
ALO22570.1	2.4e-26	65.25	RpoC2 [Cucurbita pepo subsp. fraterna] >ALO22633.1 RpoC2 [Cucurbita pepo subsp. ...	[more]
ALO22869.1	2.4e-26	65.25	RpoC2 [Cucurbita pedatifolia]	[more]
ALO22384.1	2.4e-26	65.25	RpoC2 [Cucurbita moschata]	[more]
YP_009447525.1	2.4e-26	65.25	RNA polymerase beta'' subunit [Cucurbita moschata] >ATY69966.1 RNA polymerase be...	[more]
YP_009505070.1	2.4e-26	65.25	RNA polymerase beta'' subunit [Cucurbita pepo] >AWX90360.1 RNA polymerase beta''...	[more]

BLAST of CmaCh08G006540 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	1.5e-13	43.48	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 71..129
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 71..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G006540.1	CmaCh08G006540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009536	plastid
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016779	nucleotidyltransferase activity