CmaCh08G006540 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCATCTTGCTACCACCTGAAAAAGTCAAAAGAAATTCTAAGAAAAGGAAAAATGAGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTCTTTTGTTTTTGTTCGACCTGTAATCATTCATATATGAACTAGCCGACGGTATCAATTTAGTAACATCCCACAAGATCTATATTTATTGCAAGAAAGGGAGAATCTGGAGCTTAGAGTTATCAGTTCTATCCTTAAATAGAAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCAGACTTGTTTATTGTTGGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCCCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGCAATTTCCTACGAATAGACTTAGTGAAAACCGAGACTTCGTATATCAGAAAAAGGCAAGATCCAGCAGGTTCACGATTGATCTTTCATAATGAGGCAGATCGCACCAACCCATATCAATCCATTTTTTGCTAG ATGGCATCTTGCTACCACCTGAAAAAGTCAAAAGAAATTCTAAGAAAAGGAAAAATGAGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTCTTTTGTTTTTGTTCGACCTCCGACGGTATCAATTTAGTAACATCCCACAAGATCTATATTTATTGCAAGAAAGGGAGAATCTGGAGCTTAGATTCAGACTTGTTTATTGTTGGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCCCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGCAATTTCCTACGAATAGACTTAGTGAAAACCGAGACTTCGTATATCAGAAAAAGGCAAGATCCAGCAGGTTCACGATTGATCTTTCATAATGAGGCAGATCGCACCAACCCATATCAATCCATTTTTTGCTAG ATGGCATCTTGCTACCACCTGAAAAAGTCAAAAGAAATTCTAAGAAAAGGAAAAATGAGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTCTTTTGTTTTTGTTCGACCTCCGACGGTATCAATTTAGTAACATCCCACAAGATCTATATTTATTGCAAGAAAGGGAGAATCTGGAGCTTAGATTCAGACTTGTTTATTGTTGGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGAAGCCCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGCAATTTCCTACGAATAGACTTAGTGAAAACCGAGACTTCGTATATCAGAAAAAGGCAAGATCCAGCAGGTTCACGATTGATCTTTCATAATGAGGCAGATCGCACCAACCCATATCAATCCATTTTTTGCTAG MASCYHLKKSKEILRKGKMRFMSSGSHLPRKSLLFLFDLRRYQFSNIPQDLYLLQERENLELRFRLVYCWLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKTETSYIRKRQDPAGSRLIFHNEADRTNPYQSIFC Homology
BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 2.3e-27 Identity = 72/118 (61.02%), Postives = 85/118 (72.03%), Query Frame = 0
BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: B2XWN9 (DNA-directed RNA polymerase subunit beta'' OS=Fagopyrum esculentum subsp. ancestrale OX=180217 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 4.2e-21 Identity = 60/116 (51.72%), Postives = 74/116 (63.79%), Query Frame = 0
BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: Q9BBS7 (DNA-directed RNA polymerase subunit beta'' OS=Lotus japonicus OX=34305 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.2e-20 Identity = 70/165 (42.42%), Postives = 94/165 (56.97%), Query Frame = 0
BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: Q8HVY3 (DNA-directed RNA polymerase subunit beta'' OS=Glycine max OX=3847 GN=rpoC2 PE=3 SV=2) HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20 Identity = 62/117 (52.99%), Postives = 73/117 (62.39%), Query Frame = 0
BLAST of CmaCh08G006540 vs. ExPASy Swiss-Prot
Match: B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 2.7e-20 Identity = 63/119 (52.94%), Postives = 78/119 (65.55%), Query Frame = 0
BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A2H4T1Y3 (DNA-directed RNA polymerase subunit beta'' OS=Cucurbita maxima OX=3661 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A6H0EWD1 (DNA-directed RNA polymerase subunit beta'' OS=Nothoalsomitra suberosa OX=386201 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A0S2IHI7 (DNA-directed RNA polymerase OS=Cucurbita pepo var. texana OX=37651 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A0S2IFZ6 (DNA-directed RNA polymerase OS=Cucurbita pepo subsp. fraterna OX=37649 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. ExPASy TrEMBL
Match: A0A0S2IGZ0 (DNA-directed RNA polymerase OS=Cucurbita pedatifolia OX=37647 GN=rpoC2 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. NCBI nr
Match: ALO22570.1 (RpoC2 [Cucurbita pepo subsp. fraterna] >ALO22633.1 RpoC2 [Cucurbita pepo subsp. ovifera] >ALO22679.1 RpoC2 [Cucurbita pepo var. ozarkana] >ALO22739.1 RpoC2 [Cucurbita pepo subsp. pepo] >ALO22839.1 RpoC2 [Cucurbita pepo var. texana]) HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. NCBI nr
Match: ALO22869.1 (RpoC2 [Cucurbita pedatifolia]) HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. NCBI nr
Match: ALO22384.1 (RpoC2 [Cucurbita moschata]) HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. NCBI nr
Match: YP_009447525.1 (RNA polymerase beta'' subunit [Cucurbita moschata] >ATY69966.1 RNA polymerase beta'' subunit [Cucurbita moschata]) HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. NCBI nr
Match: YP_009505070.1 (RNA polymerase beta'' subunit [Cucurbita pepo] >AWX90360.1 RNA polymerase beta'' subunit [Cucurbita pepo]) HSP 1 Score: 129.4 bits (324), Expect = 2.4e-26 Identity = 77/118 (65.25%), Postives = 86/118 (72.88%), Query Frame = 0
BLAST of CmaCh08G006540 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein ) HSP 1 Score: 73.6 bits (179), Expect = 1.5e-13 Identity = 50/115 (43.48%), Postives = 66/115 (57.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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