CmaCh08G006250 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G006250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	centromere protein C-like isoform X3
Location	Cma_Chr08: 3507935 .. 3510265 (-)
RNA-Seq Expression	CmaCh08G006250
Synteny	CmaCh08G006250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAATTTTGCTTTCAAAGTCATCATGTGTTCCACTTTCAGCTCAGGACATTGACCAATCACCAGCAAGAAATCCTTCCCTTTTTGAACTCATTAATCACTTGTCGGATGCAGTTGGTATTGCAGAGCAGTCTAAGTGTTTCTAAATTAAAGTCACTTTTAACCAAAGATGGCGGGGCTGTAGCTAATGGAATCAAGTCGCCCAAAGTCCTTATTGGAAATGCTGATTCCATATGTAAAATATCTTCGAGTAATGTTTCAAAAGTATACCAAGTTGGCGGCTTTGCTGCCTTAAGTGGAACTCATGCTAGCATGGAAGCTAATGATATTAGTGGCAGCTGCGCAGAAGTGGAAGCAAATGAGAAATTGAGTTGTTTCGAAGCTCAAGAAGATGCTGTGGCTAATGCAACTAATGCGTCCGATGACGAGGTACATATCTTTGTGCCAGTTGATTTATATGTTTTGACGTTTGATATTACATCGTGTTGTGATAAATTGATAATATGCAGATGGAAGATCACGCAGGATCGGCTTCTGAGCAACCAAGCACATCCAAGGTGGATAGGATCAAAGGGTACCCGGTTGGCATTCAGAGTCAGTCGGGTATGATCACCAATTCCAGAATATCATTAGTTACTCTAACTGATAATTTATTGTACATTCATGTAAATAGGAAATTAAAACCTAACGTATGTTTCTGCTTATCTTAGTGCTTTTGATGGTTGGTCTTTTTTGATAAATTTTGGACAAGTATGTTTTACTAAATATGTCCGAGAAATGATAATAACTCCGTAAGAAGTACGTCTTGGATTGTTAAATAAATTTTAGTAGTTGAAGTGTACCACTTCAATGCTTCACATTTTGTAGGAACTGTATAACGATGGTTTGTTCTTCTGAACAAGATGCACATGCCGACATTTTCAATCATGTTATAATTCTGAATTGGCTTCAGCTTTCTCTATGAAGAACCATTTTCTCTCTTTACGGATTGTACTGCTTATTTGGGCTTAGATTGTGTGTTTTTTATTTTCTAACAGATCAATCAACTGCTACTTGTCCTGAAAATATTGTGGAGGGGCCGTTTAGGAGCAGTGGAACAGATCACCATGATAAGGTAAACCTTTTCTTTCTTTTCTCTTTTCCTCGCCTTTATTTCCAGTTGCTCGTTATTGATGACTCGAAGTTCTTTGTCAAATTGTGGTATTTTTCATATATGAAGGCTTTCTTTATCGTGGTCTCCACTGTCATATGGAAGCACTGTATTCAGTTTCATTACTTGTTTTATCTGGCACATATTTGTTTCCTTACTCTTACGAAAAGGGGAAGAAAATGATAAAAACCCTCTTTTTGTTAAATCTACTAGTTACTGATTTTTACTGTCGAGAGAAAATCAAGGTTTTCTTGGGTTATTGTTGGATAACAGGTCCAGCCCAAATCTCGTGCAAGCAAAGAACGCAAAGGCAAAAAGATTTGCGGGAGGCAAAGCCTTGCAGGTATCTAGCCGTATATTTAACCCAAATTTTTATTTCTATACTATTGAGATTTTTCTTTCGAATTCCTTTTCGTAATCTGCCAATCTTGCCAGGGGCTGGAACAACGTGGCAATGTGGGATGAGAAGAAGTACCAGGTTCAAAACACGACCGTTGGAGTACTGGAAAGGTGAAAGGCTGTTGTATGGACGCGTACATGAGAGCAAGTAGACACTTCTTGTTGCATTGTCTTTGAAAACGTTTTTTAATAACTCCATACGTATATGTTTCTCTCAATTCCTTATTTTATGGTTCTTTTGGACTGAATATTTTGTTGGTCAGTCCTTAGTGTCACCCCAAAAGCTTTAGTTTTTTCTTGTTCAATTTATGTAAATTACTAAAATAATGAAGGGAGCGTTCTTTTTGTTAGGCCTGGCAACACTAATCGGATTGAAGTATGTGTCTCCAGCAAAAGGCAACGGCCAACCAACTCTGAAGGTGAAGTCTTTAGTCTCTGATAAGTACAAAGATCTCGTTGAGTTAGCAGCTCTCCACTGAGGGTCGTGTAGCTTTTTGGATTTTGCATGTAAATGGAGCATCTAGTCTTGCCTTATACTAAACCAAAAAATTGTACATGGGCTTGGTCTGAATAGAATTCGTCCGTATAGTTTGGTGATCGGTTTCGTTGATTTTCGTTCTTTTTTCGAGTGGAGGGATTTGAATATTCAGTCTCTTAATTGAGGGAATATATATACCAAATCCAATTGGGTTGAGTGATGGTTGTTTTGTGGAGGATAAATATGTTGGTTCAGCATTTTTACACCCCTACAGCACAAGATCGAAATATGAAATTTCTAC

mRNA sequence

ATGGACAAATTTTGCTTTCAAAGTCATCATGTGTTCCACTTTCAGCTCAGGACATTGACCAATCACCAGCAAGAAATCCTTCCCTTTTTGAACTCATTAATCACTTGTCGGATGCAGTTGGTATTGCAGAGCAGTCTAAGTGTTTCTAAATTAAAGTCACTTTTAACCAAAGATGGCGGGGCTGTAGCTAATGGAATCAAGTCGCCCAAAGTCCTTATTGGAAATGCTGATTCCATATGTAAAATATCTTCGAGTAATGTTTCAAAAGTATACCAAGTTGGCGGCTTTGCTGCCTTAAGTGGAACTCATGCTAGCATGGAAGCTAATGATATTAGTGGCAGCTGCGCAGAAGTGGAAGCAAATGAGAAATTGAGTTGTTTCGAAGCTCAAGAAGATGCTGTGGCTAATGCAACTAATGCGTCCGATGACGAGATGGAAGATCACGCAGGATCGGCTTCTGAGCAACCAAGCACATCCAAGGTGGATAGGATCAAAGGGTACCCGGTTGGCATTCAGAGTCAGTCGGATCAATCAACTGCTACTTGTCCTGAAAATATTGTGGAGGGGCCGTTTAGGAGCAGTGGAACAGATCACCATGATAAGGTCCAGCCCAAATCTCGTGCAAGCAAAGAACGCAAAGGCAAAAAGATTTGCGGGAGGCAAAGCCTTGCAGGGGCTGGAACAACGTGGCAATGTGGGATGAGAAGAAGTACCAGGTTCAAAACACGACCGTTGGAGTACTGGAAAGGTGAAAGGCTGTTGTATGGACGCGTACATGAGAGCAAGCCTGGCAACACTAATCGGATTGAAGTATGTGTCTCCAGCAAAAGGCAACGGCCAACCAACTCTGAAGGTGAAGTCTTTAGTCTCTGATAAGTACAAAGATCTCGTTGAGTTAGCAGCTCTCCACTGAGGGTCGTGTAGCTTTTTGGATTTTGCATGTAAATGGAGCATCTAGTCTTGCCTTATACTAAACCAAAAAATTGTACATGGGCTTGGTCTGAATAGAATTCGTCCGTATAGTTTGGTGATCGGTTTCGTTGATTTTCGTTCTTTTTTCGAGTGGAGGGATTTGAATATTCAGTCTCTTAATTGAGGGAATATATATACCAAATCCAATTGGGTTGAGTGATGGTTGTTTTGTGGAGGATAAATATGTTGGTTCAGCATTTTTACACCCCTACAGCACAAGATCGAAATATGAAATTTCTAC

Coding sequence (CDS)

ATGGACAAATTTTGCTTTCAAAGTCATCATGTGTTCCACTTTCAGCTCAGGACATTGACCAATCACCAGCAAGAAATCCTTCCCTTTTTGAACTCATTAATCACTTGTCGGATGCAGTTGGTATTGCAGAGCAGTCTAAGTGTTTCTAAATTAAAGTCACTTTTAACCAAAGATGGCGGGGCTGTAGCTAATGGAATCAAGTCGCCCAAAGTCCTTATTGGAAATGCTGATTCCATATGTAAAATATCTTCGAGTAATGTTTCAAAAGTATACCAAGTTGGCGGCTTTGCTGCCTTAAGTGGAACTCATGCTAGCATGGAAGCTAATGATATTAGTGGCAGCTGCGCAGAAGTGGAAGCAAATGAGAAATTGAGTTGTTTCGAAGCTCAAGAAGATGCTGTGGCTAATGCAACTAATGCGTCCGATGACGAGATGGAAGATCACGCAGGATCGGCTTCTGAGCAACCAAGCACATCCAAGGTGGATAGGATCAAAGGGTACCCGGTTGGCATTCAGAGTCAGTCGGATCAATCAACTGCTACTTGTCCTGAAAATATTGTGGAGGGGCCGTTTAGGAGCAGTGGAACAGATCACCATGATAAGGTCCAGCCCAAATCTCGTGCAAGCAAAGAACGCAAAGGCAAAAAGATTTGCGGGAGGCAAAGCCTTGCAGGGGCTGGAACAACGTGGCAATGTGGGATGAGAAGAAGTACCAGGTTCAAAACACGACCGTTGGAGTACTGGAAAGGTGAAAGGCTGTTGTATGGACGCGTACATGAGAGCAAGCCTGGCAACACTAATCGGATTGAAGTATGTGTCTCCAGCAAAAGGCAACGGCCAACCAACTCTGAAGGTGAAGTCTTTAGTCTCTGA

Protein sequence

MDKFCFQSHHVFHFQLRTLTNHQQEILPFLNSLITCRMQLVLQSSLSVSKLKSLLTKDGGAVANGIKSPKVLIGNADSICKISSSNVSKVYQVGGFAALSGTHASMEANDISGSCAEVEANEKLSCFEAQEDAVANATNASDDEMEDHAGSASEQPSTSKVDRIKGYPVGIQSQSDQSTATCPENIVEGPFRSSGTDHHDKVQPKSRASKERKGKKICGRQSLAGAGTTWQCGMRRSTRFKTRPLEYWKGERLLYGRVHESKPGNTNRIEVCVSSKRQRPTNSEGEVFSL

Homology

[Close]

BLAST of CmaCh08G006250 vs. ExPASy Swiss-Prot
Match: Q66LG9 (Centromere protein C OS=Arabidopsis thaliana OX=3702 GN=CENPC PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-09
Identity = 58/200 (29.00%), Postives = 91/200 (45.50%), Query Frame = 0


Query: 75  NADSICKISSSNVSKVYQV--------GGFAALSGTHASMEANDISGSCAEVEANEKLSC 134
           N + + + +S  V++ + V         G ++ S   A  + N + GS    E N+ L  
Sbjct: 466 NLERLAECASKEVTRPFTVEEDSIPYQQGASSKSPNRAPEQYNTMGGSLEHAEHNQGLHE 525

Query: 135 FEAQEDAVAN---ATNASDDEMEDHAGSASEQPSTSKVDRIKGYPVGIQSQS--DQSTAT 194
            E      A+     NA +     H  +   +   S    +K     +  ++  D+   T
Sbjct: 526 EENVNTGSASGLQVENAPEVHKYSHKQTNKRRKRGSSDSNVKKRSKTVHGETGGDKQMKT 585

Query: 195 CPENIVEGPFRSSGTDHHDKVQPKSRASKERKGKKICGRQSLAGAGTTWQCGMRRSTRFK 254
            P            ++  ++ +PK   + E  GK    R+SLA AGT  + G+RRSTR K
Sbjct: 586 LPHESRAKKQTKGKSNEREEKKPKKTLTHE--GKLFSCRKSLAAAGTKIEGGVRRSTRIK 645

Query: 255 TRPLEYWKGERLLYGRVHES 262
           +RPLEYW+GER LYGR+HES
Sbjct: 646 SRPLEYWRGERFLYGRIHES 663

[Close]

BLAST of CmaCh08G006250 vs. TAIR 10
Match: AT1G15660.1 (centromere protein C )

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-11
Identity = 58/200 (29.00%), Postives = 91/200 (45.50%), Query Frame = 0


Query: 75  NADSICKISSSNVSKVYQV--------GGFAALSGTHASMEANDISGSCAEVEANEKLSC 134
           N + + + +S  V++ + V         G ++ S   A  + N + GS    E N+ L  
Sbjct: 466 NLERLAECASKEVTRPFTVEEDSIPYQQGASSKSPNRAPEQYNTMGGSLEHAEHNQGLHE 525

Query: 135 FEAQEDAVAN---ATNASDDEMEDHAGSASEQPSTSKVDRIKGYPVGIQSQS--DQSTAT 194
            E      A+     NA +     H  +   +   S    +K     +  ++  D+   T
Sbjct: 526 EENVNTGSASGLQVENAPEVHKYSHKQTNKRRKRGSSDSNVKKRSKTVHGETGGDKQMKT 585

Query: 195 CPENIVEGPFRSSGTDHHDKVQPKSRASKERKGKKICGRQSLAGAGTTWQCGMRRSTRFK 254
            P            ++  ++ +PK   + E  GK    R+SLA AGT  + G+RRSTR K
Sbjct: 586 LPHESRAKKQTKGKSNEREEKKPKKTLTHE--GKLFSCRKSLAAAGTKIEGGVRRSTRIK 645

Query: 255 TRPLEYWKGERLLYGRVHES 262
           +RPLEYW+GER LYGR+HES
Sbjct: 646 SRPLEYWRGERFLYGRIHES 663

The following BLAST results are available for this feature:

BLAST of CmaCh08G006250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q66LG9	1.2e-09	29.00	Centromere protein C OS=Arabidopsis thaliana OX=3702 GN=CENPC PE=2 SV=1	[more]

BLAST of CmaCh08G006250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15660.1	8.2e-11	29.00	centromere protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..207
IPR028386	Centromere protein C/Mif2/cnp3	PANTHER	PTHR16684	CENTROMERE PROTEIN C	coord: 127..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G006250.1	CmaCh08G006250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051382	kinetochore assembly
cellular_component	GO:0000776	kinetochore
cellular_component	GO:0005634	nucleus
molecular_function	GO:0019237	centromeric DNA binding